rna4785, rna4785 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4785
Unique Name	rna4785
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1476
Alignment location	CM002464.1:343067..345263 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100048g23.10275.mrna
Orig protein id	gnl\|cribi\|Naga_100048g23.10275
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:343067..345263 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g23	gene4622	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4785	rna4785-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25903.1	cds4773	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:343067..345263-
coding sequence from alignment at CM002464.1:343067..345263-

mRNA sequence

>rna4785 ID=rna4785|Name=rna4785|organism=Nannochloropsis gaditana|type=mRNA|length=1476bp
CTCCAGAATAAAAACAGTGAACAATAGTACAGCCGGGACTTAGGCGGATA
GTCCGGAAGTTGCCATGGCAAGAAGACCGCTTTTCCTCGTTATCGGCTGT
GCTGCGTTTCCCACTCTCCAGGCTTTCAACATGGCGTACCATCCTCTTGC
ATCGTCGCGTCGCGGTAAATCTTACAGCACGGCTATAACACGATTGCAGA
GTCAGCAACGAGGCTTGTTGGGGGATGTGGTCAGGCCATATGATAACTCT
GGTGGCGAGACTGATGCGAGGCTGCAATTTTCGACCACGCGCCCTGACTG
GTTGGCTGAGCTCATGCTGGCCAAGGAGAGTCAAATTCTGCGTTTTCCAC
ACGAGCTCCGCCGGTTTGAATGGACCGCGGAGGACGACGAAGCAGTTGAC
GAATTCTTGATGCGCGGAAAGATGCAAGACGCACAGGCCTACTTTGAAGA
AAAGAAAGCGACGAGCGTCCCAATGTACCGCCAGACCTTAAGGTACCACT
GGACACAAACCGAGACGGACGTGCACGTGGGTGTTCCAGTACCCAAAGCT
GTCCGTGGAGCTAATTTGCATCTGATAGTAGCCGAAGATGCCATGCAAGT
GGCTTTGACAGACACTCCTTCTTTCGGTGTGATCTCGGGTAAATTCGCCG
GCACCATTGACCCGAGCACCTCTGGATGGCAACTTGTGCAAAAGCCGGAC
GGCAGCCACGCCATATCGATGACTCTGAAGAAACAATCCCAGCCGGGCAC
GCATGCATTGTGGTATCAGTTGTTGCAAGGCGAGAAGTTGGGGGCATGCA
TGCTCTTCAAAGGCTCGGCCGGCCAGGGACGTTACCACTGGTCACAGGAC
TTAGATTACATGAATGTTTTCATTCCCATCCCGGAGGGGGTGCGTGGAAA
GTCGGTGCAGATGACGATTGACGCGGCGGGCCGGTGTATGGAAGTTAGCC
ACCCACAGACTTCCGAGAACCCGGAGGTTACAGGGAAGCAGGGAGACGAA
GGGGGAAGACAAAGGATCGGGGGGGAATTGTCTGGGTTGGTGAGTCCGGA
CGAATGCTCATGGGTGATTGACGAGGACGGCCAAGGGCAGCGGTGTGTGT
GCTTGAGCCTGCGAAAACGCCGGCGGGAAGCGAGTGAGTCGACCTGGTGG
CCTCGGTGTTTCAAGGAGGAGGAAAGTGTAGTGCCGCCTGAGATGCAAGG
ATCCCTGGATGAGGGATTGGCGCAGGCAAGAGAGGAGAGAGAACGGATGG
AGCGGGCATTGGGCGCCGAGGACGGATGGGGAGAGGAGGAATGATCTCCA
AGGCCTGGCTTGTTGTCCACAGGTGTGAACTCTCGACCTCTCTTTCTTTT
TCTTTTAATGACGTCCCGACAGTTCTTTTTGTACAGCCAACTCTTTCTCG
CCACAAGGTCATGCCTTCCCAACGTTATTCAATTTGTACGCACTTCGTCC
TTTTTTAATAGTCTTACGCCTTTTCC

protein sequence of rna4785

>rna4785-protein ID=rna4785-protein|Name=rna4785|organism=Nannochloropsis gaditana|type=polypeptide|length=519bp
MPKLLWKQISHRSDERNEKYEKSQCRKDFGTITRTTTRTTNPICTVSSIV
NGDEGHEDQAIGLETGKSAENVERFTGIDGHTSLVQAASDHDEVIGVELG
ECAKSECAKSVESFSRKGRDASLVQTTATGVQSSTVLPAFFISFGCGRSI
IVMLALYSAALAVATVIAHVQLHSGLILLSLLPAVFMMTYAQRLFARSVL
RREMVLTFFLAILCMSPVVVVENLWYYVVLTKSHLDDAGDVPHSTGAISW
AYRFLSAFVRAFLVAALFEEGAKFLALRRLRSLPHVNDPRAMVTYGICAG
VALGTVENLFLYAFAYGIDVTLIRAILTVPMHGMTGMLTACALAEDVFLV
PAPVFPAPASPVYRPWYRIIAAPVLFHGMFDFVDFFFPDRLQSLLIAVEA
SIVVTGFVYFRWKFLRLVKAVPVEDDIHCALRKEAESLDRTALEDVFVEE
TGAVDGVESTMREKASGQEAEERNRVGLWGRLTGEGSTMGPSNRYVGAVV
GTACVFCTGMLLFLYFSPV

mRNA from alignment at CM002464.1:343067..345263-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4785 ID=rna4785|Name=rna4785|organism=Nannochloropsis gaditana|type=mRNA|length=2197bp|location=Sequence derived from alignment at CM002464.1:343067..345263- (Nannochloropsis gaditana)
CTCTGCCTTACTCTTCTTGAACAGTGCTTAATTGATACGGCACATTTTAT
CAATATTCACTCTTCTTTTCGGTTTAATCTACGATTTCGCAGGCGTGCAA
GGTATTGCCGACATTCTTCACTCGCAGTGAAGATCTACATGTATCTTGAT
CCGCCTGGACTGCAGTCATAACCTTTTCGCTGGATTATCCATATCTTGAT
GCTTCCACATGCCCAAATTGTTATGGAAACAGATCTCACATCGTTCAGAT
GAACGAAACGAGAAATATGAAAAGTCCCAATGCCGCAAAGACTTTGGCAC
AATTACCCGCACAACCACAAGGACCACAAATCCCATCTGTACCGTCAGCT
CCATCGTCAACGGGGACGAAGGCCATGAAGACCAAGCAATTGGATTGGAA
ACAGGCAAATCTGCTGAAAATGTGGAGCGATTCACGGGGATTGACGGACA
TACTTCTCTCGTGCAGGCAGCCTCCGACCATGACGAAGTAATCGGGGTGG
AGCTAGGCGAATGCGCGAAAAGCGAATGCGCGAAAAGCGTGGAAAGCTTT
TCTAGGAAAGGCAGAGATGCTTCCCTTGTGCAGACAACTGCAACAGGAGT
ACAGTCCAGCACGGTGTTACCGGCCTTTTTCATCTCGTTTGGTTGCGGTC
GGAGCATTATCGTCATGCTCGCATTGTACTCTGCAGCTCTTGCCGTCGCG
ACAGTAATCGCTCACGTCCAACTACACAGTGTAAGGACGTGTGGTGTCTC
TGGGGAAGTCATATAGGTACTGGAGTAATGTACGGGACTCACATCTACTG
TGATTTCTACCACCTCCTAATCTAGGGACTCATCCTCCTGTCGCTCCTCC
CCGCCGTCTTCATGATGACCTATGCCCAACGTCTATTCGCAAGGAGCGTA
CTCCGCCGAGAAATGGTTCTCACTTTCTTTCTAGCCATTCTGTGCATGAG
TCCAGTAGTCGTGGTAGAAAATCTGTGGTACTACGTCGTGCTGACCAAGA
GCCACTTAGATGACGCTGGCGATGTACCCCACAGTACCGGCGCCATTTCC
TGGGCATATCGCTTCCTTTCTGCATTCGTACGAGCGTTTCTCGTCGCAGC
TTTGTTCGAGGAAGGTGCTAAATTTTTGGCCTTGCGGCGTTTACGGTCAC
TGCCCCATGTAAACGACCCACGTGCCATGGTCACCTATGGCATATGCGCA
GGTGTCGCCCTTGGAACGGTTGAAAATCTTTTTCTCTACGCCTTCGCGTA
TGGCATCGACGTTACTCTCATTCGTGCTATCCTCACTGTGCCCATGCACG
GCATGACGGGGATGCTGACCGCCTGTGCCTTGGCTGAGGACGTTTTCCTG
GTACCAGCTCCTGTTTTCCCCGCACCCGCCTCGCCCGTATACCGCCCTTG
GTACCGTATTATCGCGGCTCCCGTTTTGTTTCACGGTATGTTTGACTTTG
TGGATTTCTTTTTTCCGGACCGACTTCAAAGCTTGTTGATCGCAGTAGAA
GCCAGTATCGTGGTGACAGGATTCGTCTATTTCCGCTGGAAATTTTTGCG
GCTGGTCAAAGCAGTGCCCGTTGAGGATGATATTCATTGTGCCCTTAGAA
AAGAAGCCGAGAGCCTCGACAGGACGGCGTTGGAGGATGTTTTTGTAGAA
GAGACAGGGGCGGTTGACGGTGTCGAGAGCACGATGAGGGAGAAAGCTTC
GGGACAGGAAGCCGAAGAACGCAACCGAGTTGGCCTGTGGGGAAGACTCA
CAGGCGAGGGTAGCACGATGGGTCCCTCCAACCGGTACGTAGGAGCGGTG
GTGGGGACAGCATGCGTGTTTTGCACCGGCATGTTACTCTTCTTGTATTT
CAGCCCGGTGTAAAAGGATGGCATGCAGCGAAAGCGGCACTGGCGACAGA
GCCACACAGCATCATGTACTGGTGGCGCGTAAAGTTATCAGCCGGACAGC
CATTGCTCTCCTCGCGGTTTAGGGAACAGTGGCATGTACACACAGATAAA
TAGTTTAGTTAGTAGTGCGACGGGAAAAGGCGTAAGACTATTAAAAAAGG
ACGAAGTGCGTACAAATTGAATAACGTTGGGAAGGCATGACCTTGTGGCG
AGAAAGAGTTGGCTGTACAAAAAGAACTGTCGGGACGTCATTAAAAGAAA
AAGAAAGAGAGGTCGAGAGTTCACACCTGTGGACAACAAGCCAGGCC

Coding sequence (CDS) from alignment at CM002464.1:343067..345263-

>rna4785 ID=rna4785|Name=rna4785|organism=Nannochloropsis gaditana|type=CDS|length=3120bp|location=Sequence derived from alignment at CM002464.1:343067..345263- (Nannochloropsis gaditana)
GGACTCATCCTCCTGTCGCTCCTCCCCGCCGTCTTCATGATGACCTATGC
CCAACGTCTATTCGCAAGGAGCGTACTCCGCCGAGAAATGGTTCTCACTT
TCTTTCTAGCCATTCTGTGCATGAGTCCAGTAGTCGTGGTAGAAAATCTG
TGGTACTACGTCGTGCTGACCAAGAGCCACTTAGATGACGCTGGCGATGT
ACCCCACAGTACCGGCGCCATTTCCTGGGCATATCGCTTCCTTTCTGCAT
TCGTACGAGCGTTTCTCGTCGCAGCTTTGTTCGAGGAAGGTGCTAAATTT
TTGGCCTTGCGGCGTTTACGGTCACTGCCCCATGTAAACGACCCACGTGC
CATGGTCACCTATGGCATATGCGCAGGTGTCGCCCTTGGAACGGTTGAAA
ATCTTTTTCTCTACGCCTTCGCGTATGGCATCGACGTTACTCTCATTCGT
GCTATCCTCACTGTGCCCATGCACGGCATGACGGGGATGCTGACCGCCTG
TGCCTTGGCTGAGGACGTTTTCCTGGTACCAGCTCCTGTTTTCCCCGCAC
CCGCCTCGCCCGTATACCGCCCTTGGTACCGTATTATCGCGGCTCCCGTT
TTGTTTCACGGTATGTTTGACTTTGTGGATTTCTTTTTTCCGGACCGACT
TCAAAGCTTGTTGATCGCAGTAGAAGCCAGTATCGTGGTGACAGGATTCG
TCTATTTCCGCTGGAAATTTTTGCGGCTGGTCAAAGCAGTGCCCGTTGAG
GATGATATTCATTGTGCCCTTAGAAAAGAAGCCGAGAGCCTCGACAGGAC
GGCGTTGGAGGATGTTTTTGTAGAAGAGACAGGGGCGGTTGACGGTGTCG
AGAGCACGATGAGGGAGAAAGCTTCGGGACAGGAAGCCGAAGAACGCAAC
CGAGTTGGCCTGTGGGGAAGACTCACAGGCGAGGGTAGCACGATGGGTCC
CTCCAACCGGTACGTAGGAGCGGTGGTGGGGACAGCATGCGTGTTTTGCA
CCGGCATGTTACTCTTCTTGTATTTCAGCCCGGTGTAAATGCCCAAATTG
TTATGGAAACAGATCTCACATCGTTCAGATGAACGAAACGAGAAATATGA
AAAGTCCCAATGCCGCAAAGACTTTGGCACAATTACCCGCACAACCACAA
GGACCACAAATCCCATCTGTACCGTCAGCTCCATCGTCAACGGGGACGAA
GGCCATGAAGACCAAGCAATTGGATTGGAAACAGGCAAATCTGCTGAAAA
TGTGGAGCGATTCACGGGGATTGACGGACATACTTCTCTCGTGCAGGCAG
CCTCCGACCATGACGAAGTAATCGGGGTGGAGCTAGGCGAATGCGCGAAA
AGCGAATGCGCGAAAAGCGTGGAAAGCTTTTCTAGGAAAGGCAGAGATGC
TTCCCTTGTGCAGACAACTGCAACAGGAGTACAGTCCAGCACGGTGTTAC
CGGCCTTTTTCATCTCGTTTGGTTGCGGTCGGAGCATTATCGTCATGCTC
GCATTGTACTCTGCAGCTCTTGCCGTCGCGACAGTAATCGCTCACGTCCA
ACTACACAGTGGACTCATCCTCCTGTCGCTCCTCCCCGCCGTCTTCATGA
TGACCTATGCCCAACGTCTATTCGCAAGGAGCGTACTCCGCCGAGAAATG
GTTCTCACTTTCTTTCTAGCCATTCTGTGCATGAGTCCAGTAGTCGTGGT
AGAAAATCTGTGGTACTACGTCGTGCTGACCAAGAGCCACTTAGATGACG
CTGGCGATGTACCCCACAGTACCGGCGCCATTTCCTGGGCATATCGCTTC
CTTTCTGCATTCGTACGAGCGTTTCTCGTCGCAGCTTTGTTCGAGGAAGG
TGCTAAATTTTTGGCCTTGCGGCGTTTACGGTCACTGCCCCATGTAAACG
ACCCACGTGCCATGGTCACCTATGGCATATGCGCAGGTGTCGCCCTTGGA
ACGGTTGAAAATCTTTTTCTCTACGCCTTCGCGTATGGCATCGACGTTAC
TCTCATTCGTGCTATCCTCACTGTGCCCATGCACGGCATGACGGGGATGC
TGACCGCCTGTGCCTTGGCTGAGGACGTTTTCCTGGTACCAGCTCCTGTT
TTCCCCGCACCCGCCTCGCCCGTATACCGCCCTTGGTACCGTATTATCGC
GGCTCCCGTTTTGTTTCACGGTATGTTTGACTTTGTGGATTTCTTTTTTC
CGGACCGACTTCAAAGCTTGTTGATCGCAGTAGAAGCCAGTATCGTGGTG
ACAGGATTCGTCTATTTCCGCTGGAAATTTTTGCGGCTGGTCAAAGCAGT
GCCCGTTGAGGATGATATTCATTGTGCCCTTAGAAAAGAAGCCGAGAGCC
TCGACAGGACGGCGTTGGAGGATGTTTTTGTAGAAGAGACAGGGGCGGTT
GACGGTGTCGAGAGCACGATGAGGGAGAAAGCTTCGGGACAGGAAGCCGA
AGAACGCAACCGAGTTGGCCTGTGGGGAAGACTCACAGGCGAGGGTAGCA
CGATGGGTCCCTCCAACCGGTACGTAGGAGCGGTGGTGGGGACAGCATGC
GTGTTTTGCACCGGCATGTTACTCTTCTTGTATTTCAGCCCGGTGTAAAT
GCCCAAATTGTTATGGAAACAGATCTCACATCGTTCAGATGAACGAAACG
AGAAATATGAAAAGTCCCAATGCCGCAAAGACTTTGGCACAATTACCCGC
ACAACCACAAGGACCACAAATCCCATCTGTACCGTCAGCTCCATCGTCAA
CGGGGACGAAGGCCATGAAGACCAAGCAATTGGATTGGAAACAGGCAAAT
CTGCTGAAAATGTGGAGCGATTCACGGGGATTGACGGACATACTTCTCTC
GTGCAGGCAGCCTCCGACCATGACGAAGTAATCGGGGTGGAGCTAGGCGA
ATGCGCGAAAAGCGAATGCGCGAAAAGCGTGGAAAGCTTTTCTAGGAAAG
GCAGAGATGCTTCCCTTGTGCAGACAACTGCAACAGGAGTACAGTCCAGC
ACGGTGTTACCGGCCTTTTTCATCTCGTTTGGTTGCGGTCGGAGCATTAT
CGTCATGCTCGCATTGTACTCTGCAGCTCTTGCCGTCGCGACAGTAATCG
CTCACGTCCAACTACACAGT

Synonyms

Publications