rna4734, rna4734 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4734
Unique Name	rna4734
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1934
Alignment location	CM002464.1:211411..212541 -

Link to JBrowse

Properties


Property Name	Value
Product	ubiquitin-activating enzyme e1
Orig transcript id	gnl\|cribi\|Naga_100665g1.2036.mrna
Orig protein id	gnl\|cribi\|Naga_100665g1.2036
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:211411..212541 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100665g1	gene4571	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4734	rna4734-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25950.1	cds4722	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:211411..212541-
coding sequence from alignment at CM002464.1:211411..212541-

mRNA sequence

>rna4734 ID=rna4734|Name=rna4734|organism=Nannochloropsis gaditana|type=mRNA|length=1934bp
GCTCATGTTATTCCATTTCACGATAATGCTTATGCTCCACCTTTTTGTCA
AAGCCAGGCACGTTTCCACTCACGGCGTTCCGCCGCGCCGGCGCAACGAC
GAACGAGCCATCAGGGGATCGACTGAGGGGAGTTCAAGATGACCGCGGCC
AACTTGCTTTCCCGGCCATGGAACCTGGCGAGGTTGCGTTCCATGTTTAA
GGCTTACTCAACTCATGGCGTTGCAGGAGGAAGACGTGGCAGAGTGCCTG
CGCGGGGAGATAGATACGGAACGATTCATGTCCCGCGTCTGGGACACACC
AGAGTATGCAGCACCATCTCGGGCATACCAACCTCGACACCTGACTCAGA
GCAACAAAAACCGAAACGTCATAGCCAGATAGAAATTCAGGATGCAGTCA
TGACTGGGGAAGATGTGGATAGCATTCGAAGTCTGAAGAGACGAGATATG
CAAGCACGCCAAAGGGAAGAGGACGAGAAGAATACGCGACTGCAATCTCT
CCTAGAAGAGAACGGGAATTGCCGTGCTGCTGCACGCTATTTGATGGAGG
AGATGCTATCGATCGCCCCACAAGGAGAAGAACAATTAAGGGCGGAAAAT
TTGGATGCGGCAAAAGCGCCAGTACCCCCCCGCGGAGATCTTTTACATCG
GATGATCGTTAATCTGGGTGAAATCGAAGAGGTAGACACTGCAGTCCGCA
TTCTCACTGCCAGCACCGCTGTAACTCACCCTCTCGACGACAAGACCCGC
GGCAGCGAAGCTTGCAAGCGCCAGGCGGGCCCCATTGTACCTTTAAGAAG
CTCGAGGCGAGGTCGACGGCCCCGGCCCCTGGGAGCCATCATCCATTCCA
ACGTTCGCCCCTCTCCCTCCCCCTCCCCCTCCACCTCGCCCTCTACTTTT
TGTTCCCCTTCGATCAACCCTTCCCTCAAGCGCGCTACCCTTCTGTGTTA
CCACCATTTACTCACCCTTTGTCTTCGCCTTCAGCGTCTTGACTTGGCCC
TGCTCCTCTTCCAGTCCGCTGCGTCCCGATCCATCCTCTTCGATCTGCCC
ACCTTCAACCACCTCCTCGCCTCCCTCCCACCTTCCCTCTACTCGCCGTC
CCTCCTCTCCTCCCTCTTGGCTTACCCCATCTCCGTAGGCTTGGGCCCCA
CCTCTCTCACCTATTCTTGCGCGGTATGGGCGGCCCTCCAGGCGAGAGAT
TTCCCACAGGTCAGGAAAATTCTCCGGGGGATGCACGCGTCTCGTATGCC
TGTCCCTGTGGAGATGTGGCTGGCGGTGTACGCTGCCACTTTGGAAGGGC
GGGAGGGAGGAGGGACAGCAGGGAGGGAGGAGGATGGCGCCGCGCTGATG
GAGCAGTTGCACCGGCAGGCGGCGATGAAATTGGAAGGAGTGATGGAAGT
GATGCTGGCAAAGATTTCGGCGGACGTCTTGTCGGACGGGGCGGGAGAAG
GGGTGATGGAAGGGGAGGAGGACGAGGGGGAGGAGTGGGAGGAAGGGGAG
GAGGAGGAGGAAGGGCCCGGGGGGCCGGCGGCTCTGGGTGCGCCCCCTCC
TTCTGGAGGAGGAGGAGGAGGAAGAGGAAGGGGAGGGGCTGGGAGAGGGA
TGGGAGGAGGAGGGGGTTGGGTGGGGGGAGAGGTGTCGGGGGAGGACGGG
CTGATGGGCGGCTTTCGAGGTGGAGGTTGGGCCGGAGGGGGCGGTAGAGG
AGGGGCGTTGGCGGGGATGGGGGGATCGGGACGCTGGCCGTTGGTGACGG
GCACGTACGTGCGGGGAATTTTCTCGGCTGGGGCGGAAGGAAGGGAGGGA
GAGTGGGGGGAAGGGGAGGAGGAGGAGGGGGAGGAAGAGGAGGAGGAGGA
GGAAGAGGAGGAGGAAGAGGAGGAGGAAGCCCCTGCGGATGGCCCCTTCT
GGACGAGCGGGAGGCGATGCGGTCAACGTTTGCG

protein sequence of rna4734

>rna4734-protein ID=rna4734-protein|Name=rna4734|organism=Nannochloropsis gaditana|type=polypeptide|length=203bp
MEEAKMSTGMEPGHENIDEGLYSRQLYVMGHEAQKRMQASDVLIVGVAGL
GIEVAKNVILAGVKSVTLFDPAPVAYPDLAAQFYLSEADLGKPRDQASAP
RLAELNPYVPVHVLEPEAGEALTAEAVKRYQVLCVTNRPLAEQLRLNAIT
HPLNIAFIASEVRGLCGSVFCDFGEAFLVSDPSDEPAINAMIGSITQPLL
LPT

mRNA from alignment at CM002464.1:211411..212541-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4734 ID=rna4734|Name=rna4734|organism=Nannochloropsis gaditana|type=mRNA|length=1131bp|location=Sequence derived from alignment at CM002464.1:211411..212541- (Nannochloropsis gaditana)
ATGGAGGAAGCCAAGATGAGCACTGGGATGGAGCCGGGGCACGAGAACAT
TGACGAAGGCTTGTACTCCCGTCAGCTTTATGTGATGGGACACGAGGCGC
AGAAGCGGATGCAGGCCTCGGACGTGCTCATCGTCGGTGAGTGGCTGCAT
GCTTCCGAGGAGCGACAACGCCCGTCCTCCATCACAATCTTCCCCTATTT
GCCTGTCGTATACCTGTCCCCGCCGGCTTTGGGACCGAATTGTTCAGCCC
GCTGCTTTCCACGCCAAGTCCCACCTCGCACTTCCTGCCCATCTCATTGT
GCATCGTCCATTGCTTCCTTCCCGTTCCCGACAGGGGTGGCCGGTCTGGG
CATCGAAGTCGCCAAGAACGTGATCTTGGCCGGCGTCAAGTCCGTCACGC
TCTTCGACCCCGCCCCCGTCGCATACCCGGATCTTGCTGCCCAATTCTAC
CTCTCAGAGGCCGACTTAGGCAAGCCGCGGGACCAAGCCTCCGCGCCCCG
ACTCGCGGAGCTGAATCCTTACGTGCCCGTGCATGTGCTGGAGCCGGAGG
CCGGCGAGGCCCTGACGGCAGAGGCGGTGAAGCGGTACCAGGTCCTCTGC
GTGACCAACCGACCTTTGGCAGAGCAGCTCCGCTTGAACGCCATCACCCA
CCCCTTGGTACGATCCTGCTTGCATGTATCTGGCTCTTTGTGTGGGGGGG
AACGCTGGCCCTGTGTGTCTGGATTCTTCTTTTTGCCCGAGGCCTCTGGG
GTCCCTCGGACAGGCGACGCGACTCGGTACTCGACGCCGCTCCCTCCCTC
CCTCCATCCATCCCTCCCTCTCTCCCTTCCCCTCTCCATCTTTCAGAACA
TCGCCTTCATCGCCAGCGAGGTCCGGGGACTGTGTGGGAGCGTGTTTTGT
GACTTCGGCGAGGCCTTTTTGGTCTCGGACCCGTCGGACGAACCCGCCAT
CAACGCCATGATTGGCAGCATTACCCAGGTGCCCCTCCCTCCCTCCCTCC
CTCCCTTCCTTCCCTCCCTCCCTCCTTCCTTCCCTCCCACTCTCCTCCCT
CCCAAACGCCATCTTTTCCGAGTCCATCTTGTCGCTCTCAGACCTGTCAT
GGGCGTGTAGCCCCTCCTACTTCCAACATGA

Coding sequence (CDS) from alignment at CM002464.1:211411..212541-

>rna4734 ID=rna4734|Name=rna4734|organism=Nannochloropsis gaditana|type=CDS|length=2448bp|location=Sequence derived from alignment at CM002464.1:211411..212541- (Nannochloropsis gaditana)
CCCCTCCTACTTCCAACATGAAACATCGCCTTCATCGCCAGCGAGGTCCG
GGGACTGTGTGGGAGCGTGTTTTGTGACTTCGGCGAGGCCTTTTTGGTCT
CGGACCCGTCGGACGAACCCGCCATCAACGCCATGATTGGCAGCATTACC
CAGGGGTGGCCGGTCTGGGCATCGAAGTCGCCAAGAACGTGATCTTGGCC
GGCGTCAAGTCCGTCACGCTCTTCGACCCCGCCCCCGTCGCATACCCGGA
TCTTGCTGCCCAATTCTACCTCTCAGAGGCCGACTTAGGCAAGCCGCGGG
ACCAAGCCTCCGCGCCCCGACTCGCGGAGCTGAATCCTTACGTGCCCGTG
CATGTGCTGGAGCCGGAGGCCGGCGAGGCCCTGACGGCAGAGGCGGTGAA
GCGGTACCAGGTCCTCTGCGTGACCAACCGACCTTTGGCAGAGCAGCTCC
GCTTGAACGCCATCACCCACCCCTTGATGGAGGAAGCCAAGATGAGCACT
GGGATGGAGCCGGGGCACGAGAACATTGACGAAGGCTTGTACTCCCGTCA
GCTTTATGTGATGGGACACGAGGCGCAGAAGCGGATGCAGGCCTCGGACG
TGCTCATCGTCGCCCCTCCTACTTCCAACATGAAACATCGCCTTCATCGC
CAGCGAGGTCCGGGGACTGTGTGGGAGCGTGTTTTGTGACTTCGGCGAGG
CCTTTTTGGTCTCGGACCCGTCGGACGAACCCGCCATCAACGCCATGATT
GGCAGCATTACCCAGGGGTGGCCGGTCTGGGCATCGAAGTCGCCAAGAAC
GTGATCTTGGCCGGCGTCAAGTCCGTCACGCTCTTCGACCCCGCCCCCGT
CGCATACCCGGATCTTGCTGCCCAATTCTACCTCTCAGAGGCCGACTTAG
GCAAGCCGCGGGACCAAGCCTCCGCGCCCCGACTCGCGGAGCTGAATCCT
TACGTGCCCGTGCATGTGCTGGAGCCGGAGGCCGGCGAGGCCCTGACGGC
AGAGGCGGTGAAGCGGTACCAGGTCCTCTGCGTGACCAACCGACCTTTGG
CAGAGCAGCTCCGCTTGAACGCCATCACCCACCCCTTGATGGAGGAAGCC
AAGATGAGCACTGGGATGGAGCCGGGGCACGAGAACATTGACGAAGGCTT
GTACTCCCGTCAGCTTTATGTGATGGGACACGAGGCGCAGAAGCGGATGC
AGGCCTCGGACGTGCTCATCGTCGCCCCTCCTACTTCCAACATGAAACAT
CGCCTTCATCGCCAGCGAGGTCCGGGGACTGTGTGGGAGCGTGTTTTGTG
ACTTCGGCGAGGCCTTTTTGGTCTCGGACCCGTCGGACGAACCCGCCATC
AACGCCATGATTGGCAGCATTACCCAGGGGTGGCCGGTCTGGGCATCGAA
GTCGCCAAGAACGTGATCTTGGCCGGCGTCAAGTCCGTCACGCTCTTCGA
CCCCGCCCCCGTCGCATACCCGGATCTTGCTGCCCAATTCTACCTCTCAG
AGGCCGACTTAGGCAAGCCGCGGGACCAAGCCTCCGCGCCCCGACTCGCG
GAGCTGAATCCTTACGTGCCCGTGCATGTGCTGGAGCCGGAGGCCGGCGA
GGCCCTGACGGCAGAGGCGGTGAAGCGGTACCAGGTCCTCTGCGTGACCA
ACCGACCTTTGGCAGAGCAGCTCCGCTTGAACGCCATCACCCACCCCTTG
ATGGAGGAAGCCAAGATGAGCACTGGGATGGAGCCGGGGCACGAGAACAT
TGACGAAGGCTTGTACTCCCGTCAGCTTTATGTGATGGGACACGAGGCGC
AGAAGCGGATGCAGGCCTCGGACGTGCTCATCGTCGCCCCTCCTACTTCC
AACATGAAACATCGCCTTCATCGCCAGCGAGGTCCGGGGACTGTGTGGGA
GCGTGTTTTGTGACTTCGGCGAGGCCTTTTTGGTCTCGGACCCGTCGGAC
GAACCCGCCATCAACGCCATGATTGGCAGCATTACCCAGGGGTGGCCGGT
CTGGGCATCGAAGTCGCCAAGAACGTGATCTTGGCCGGCGTCAAGTCCGT
CACGCTCTTCGACCCCGCCCCCGTCGCATACCCGGATCTTGCTGCCCAAT
TCTACCTCTCAGAGGCCGACTTAGGCAAGCCGCGGGACCAAGCCTCCGCG
CCCCGACTCGCGGAGCTGAATCCTTACGTGCCCGTGCATGTGCTGGAGCC
GGAGGCCGGCGAGGCCCTGACGGCAGAGGCGGTGAAGCGGTACCAGGTCC
TCTGCGTGACCAACCGACCTTTGGCAGAGCAGCTCCGCTTGAACGCCATC
ACCCACCCCTTGATGGAGGAAGCCAAGATGAGCACTGGGATGGAGCCGGG
GCACGAGAACATTGACGAAGGCTTGTACTCCCGTCAGCTTTATGTGATGG
GACACGAGGCGCAGAAGCGGATGCAGGCCTCGGACGTGCTCATCGTCG

Synonyms

Publications