EWM25972.1, cds4701 (CDS) Nannochloropsis gaditana

Overview
NameEWM25972.1
Unique Namecds4701
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:151277..152125 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25972.1
Producttwist neighbor
Orig transcript idgnl|cribi|Naga_100557g1.10088.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:151277..152125 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
Homology
BLAST of EWM25972.1 vs. NCBI_GenBank
Match: gi|585107867|gb|EWM25972.1| (twist neighbor [Nannochloropsis gaditana])

HSP 1 Score: 559.681 bits (1441), Expect = 0.000e+0
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
Query:    1 MPKRRRVNQEKGNDVAGEDDKIVPSPVIQVPFQEQRVLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGGKEVLGLGEEVAFRVVLVHEAAGLIALDGSLREEGGEPRAPVAGLREGDGGGKGGEGGREVEEEERKGGAGREGKKRDTRGTAEEGASVKKRKEGTGKAEAKAHKKGKGKRLKGEKGPA 282
            MPKRRRVNQEKGNDVAGEDDKIVPSPVIQVPFQEQRVLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGGKEVLGLGEEVAFRVVLVHEAAGLIALDGSLREEGGEPRAPVAGLREGDGGGKGGEGGREVEEEERKGGAGREGKKRDTRGTAEEGASVKKRKEGTGKAEAKAHKKGKGKRLKGEKGPA
Sbjct:    1 MPKRRRVNQEKGNDVAGEDDKIVPSPVIQVPFQEQRVLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGGKEVLGLGEEVAFRVVLVHEAAGLIALDGSLREEGGEPRAPVAGLREGDGGGKGGEGGREVEEEERKGGAGREGKKRDTRGTAEEGASVKKRKEGTGKAEAKAHKKGKGKRLKGEKGPA 282          
BLAST of EWM25972.1 vs. NCBI_GenBank
Match: gi|298708392|emb|CBJ48455.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 132.88 bits (333), Expect = 8.105e-34
Identity = 72/178 (40.45%), Postives = 109/178 (61.24%), Query Frame = 0
Query:   31 PFQEQRVLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGT-GGK----EVLGLGEEVAFRVVLVHEAAGLIALDGSLREEGGEPRA 203
            PF+E  +   ++LLP  +G++   I   ++  LM+YN+ +GG+LL +S + F    R   +  ++PH+H  V+A + VF P PG  L G V KVTSTHV +LV G+FNA++A E M + + FD     W  + GGK    EV+ +G ++ F V  +HEAAGLI+++GSL    G P+A
Sbjct:    5 PFEEVELKMCVSLLPSDIGDIYAGIRRNIYQFLMRYNEALGGVLLAVSDLSFGDGAREGRIEDEMPHIHFDVKAKAQVFRPRPGHVLQGRVNKVTSTHVGMLVCGIFNASVASESMGEGFRFDMTAREWQRSRGGKHGAGEVIAVGADMQFVVTRMHEAAGLISIEGSLE---GLPKA 179          
BLAST of EWM25972.1 vs. NCBI_GenBank
Match: gi|669157884|ref|XP_008614504.1| (hypothetical protein SDRG_10298 [Saprolegnia diclina VS20] >gi|530733860|gb|EQC32102.1| hypothetical protein SDRG_10298 [Saprolegnia diclina VS20])

HSP 1 Score: 132.109 bits (331), Expect = 1.611e-33
Identity = 66/165 (40.00%), Postives = 103/165 (62.42%), Query Frame = 0
Query:   31 PFQEQRVLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGGKEVLGLGEEVAFRVVLVHEAAGLIALDGSLR 195
            PF   +++   +L P  + + ++ + E+L+ MLMKY   V G++L  + +       +  ++ + P++HVRV A +LVF P PGM L+ VV KV S H+ LL+ G+FN +I   +MPD Y  ++  EAWVG  G  +  LG EVAF V+ VH+A G+I++DGS+R
Sbjct:   15 PFVNAKLVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCDPVEGVILAFNAITL--LNPYGHIINETPYIHVRVAADALVFRPTPGMELSAVVNKVGSNHIGLLLAGVFNVSIDAAEMPDGYTHNFHEEAWVGDDGVTI-ELGAEVAFNVLRVHQAYGVISIDGSMR 176          
BLAST of EWM25972.1 vs. NCBI_GenBank
Match: gi|813149771|ref|XP_012200532.1| (hypothetical protein SPRG_20002 [Saprolegnia parasitica CBS 223.65] >gi|641534865|gb|KDO28795.1| hypothetical protein SPRG_20002 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 130.568 bits (327), Expect = 4.734e-33
Identity = 65/165 (39.39%), Postives = 102/165 (61.82%), Query Frame = 0
Query:   31 PFQEQRVLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGGKEVLGLGEEVAFRVVLVHEAAGLIALDGSLR 195
            PF   +++   +L P  + + ++ + E+L+ MLMKY   V G++L  + +       +  ++ + P++HVRV A +LVF P PGM L+ VV KV S H+ LL+ G+FN +I   +MPD Y  ++  EAWVG  G  +   G EVAF V+ VH+A G+I++DGS+R
Sbjct:    3 PFVNAKLVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCDPVEGVILAFNAITL--LNPYGHIINETPYIHVRVAADALVFRPTPGMQLSAVVNKVGSNHIGLLLAGVFNVSIDSTEMPDGYVHNFQEEAWVGDDGVTI-EFGAEVAFHVLRVHQAYGVISIDGSMR 164          
BLAST of EWM25972.1 vs. NCBI_GenBank
Match: gi|1173947315|gb|OQR95652.1| (nitroreductase family [Thraustotheca clavata])

HSP 1 Score: 132.494 bits (332), Expect = 6.973e-32
Identity = 65/168 (38.69%), Postives = 104/168 (61.90%), Query Frame = 0
Query:   31 PFQEQRVLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGGKEVLGLGEEVAFRVVLVHEAAGLIALDGSLREEG 198
            PF   +++   +L P  + + ++ + E+L+ MLMKY   V G+LL  + V+      +  ++ + P++H+RV A +LVF P+ GM L+ VV KV S H+ LL+ G+FN +IA ++MP+ YA  Y  +AWV   G  +  L  EV F+V+ VH A G+I++DGS+R  G
Sbjct:    3 PFVNAKLVMSCSLAPCHIQDAKKGLEEQLNTMLMKYCDPVEGVLLAFNSVQL--LNPYGHIINETPYIHIRVAADALVFRPQTGMELSAVVCKVGSNHIGLLLNGVFNVSIASDEMPEGYAHSYSDDAWVNEDGATI-ALESEVTFQVLRVHVAHGVISIDGSMRLVG 167          
BLAST of EWM25972.1 vs. NCBI_GenBank
Match: gi|673029598|ref|XP_008868760.1| (hypothetical protein H310_05728 [Aphanomyces invadans] >gi|574475155|gb|ETW02155.1| hypothetical protein H310_05728 [Aphanomyces invadans])

HSP 1 Score: 126.331 bits (316), Expect = 2.409e-31
Identity = 61/165 (36.97%), Postives = 101/165 (61.21%), Query Frame = 0
Query:   32 FQEQRVLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGGKEVLGLGEEVAFRVVLVHEAAGLIALDGSLRE 196
            F + +++   +L P  + N ++ + ++L+ MLMKY   V G+LL  + ++      +  ++ + P++HVR+ A +LVF P PGM LTG V KV S H+ LL+ G+FN +IA  +MP  +  +Y  +AW+G     +  + + V FRVV VH A G+I++DGS+R 
Sbjct:    7 FAKAKLVMSCSLAPYHIQNAKKGLEDQLNLMLMKYCDPVQGVLLAFNSLQV--INPYGHIINETPYIHVRIAADALVFRPTPGMQLTGTVSKVGSNHIGLLLAGVFNVSIAATEMPSGFVHNYHEDAWIGQDSSAI-AVDDSVEFRVVKVHVAHGVISIDGSMRS 168          
BLAST of EWM25972.1 vs. NCBI_GenBank
Match: gi|1173950115|gb|OQR98094.1| (hypothetical protein ACHHYP_09215 [Achlya hypogyna])

HSP 1 Score: 123.25 bits (308), Expect = 4.011e-30
Identity = 60/165 (36.36%), Postives = 101/165 (61.21%), Query Frame = 0
Query:   31 PFQEQRVLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGGKEVLGLGEEVAFRVVLVHEAAGLIALDGSLR 195
            PF   +++   +L P  + + ++ + E+L+ MLMKY + V G++L    ++      +  ++ + P++HV+V   +LVF P+ GM+L+  V KV S+H+ LL+ G+FN +IA  DMP  YA  Y  +AW+   G  +  L  EV+F VV VH A G+I+++GS+R
Sbjct:    3 PFVNAKLVMSCSLAPCHIHDAKKGLEEQLNLMLMKYCEPVEGVVLAFDGIKL--LNPYGHIINETPYIHVKVATEALVFRPKAGMTLSANVNKVGSSHIGLLLAGVFNVSIAAADMPKGYAHSYSDDAWINEDGATI-ALESEVSFTVVRVHVAHGVISIEGSMR 164          
BLAST of EWM25972.1 vs. NCBI_GenBank
Match: gi|673029600|ref|XP_008868761.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574475156|gb|ETW02156.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 122.479 bits (306), Expect = 4.875e-30
Identity = 60/158 (37.97%), Postives = 96/158 (60.76%), Query Frame = 0
Query:   39 FKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGGKEVLGLGEEVAFRVVLVHEAAGLIALDGSLRE 196
               +L P  + N ++ + ++L+ MLMKY   V G+LL  + ++      +  ++ + P++HVR+ A +LVF P PGM LTG V KV S H+ LL+ G+FN +IA  +MP  +  +Y  +AW+G     +  + + V FRVV VH A G+I++DGS+R 
Sbjct:    1 MSCSLAPYHIQNAKKGLEDQLNLMLMKYCDPVQGVLLAFNSLQV--INPYGHIINETPYIHVRIAADALVFRPTPGMQLTGTVSKVGSNHIGLLLAGVFNVSIAATEMPSGFVHNYHEDAWIGQDSSAI-AVDDSVEFRVVKVHVAHGVISIDGSMRS 155          
BLAST of EWM25972.1 vs. NCBI_GenBank
Match: gi|698801618|ref|XP_009833838.1| (hypothetical protein H257_09342 [Aphanomyces astaci] >gi|574111429|gb|ETV76925.1| hypothetical protein H257_09342 [Aphanomyces astaci])

HSP 1 Score: 123.25 bits (308), Expect = 4.948e-30
Identity = 59/165 (35.76%), Postives = 102/165 (61.82%), Query Frame = 0
Query:   32 FQEQRVLFKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGGKEVLGLGEEVAFRVVLVHEAAGLIALDGSLRE 196
            F + +++   +L P  + + ++ + ++L+ MLMKY++ V G+LL  + ++      +  ++ + P++HVR+ A +LVF P PGM LT  V KV S H+ LL+ G+FN +IA  +MP  +  +Y  +AWVG     +  + + V FRV+ VH A G+I++DGS+R 
Sbjct:    7 FAKAKLVMSCSLAPYHIQDPKKGLEDQLNHMLMKYSEPVQGVLLAFNSLQV--INPYGHIINETPYIHVRIAADALVFRPTPGMQLTATVNKVGSNHIGLLLAGVFNVSIAATEMPSGFVHNYHEDAWVGKDSSAI-AVDDAVEFRVLQVHVAHGVISIDGSMRS 168          
BLAST of EWM25972.1 vs. NCBI_GenBank
Match: gi|698801616|ref|XP_009833837.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574111430|gb|ETV76926.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 119.783 bits (299), Expect = 7.549e-29
Identity = 58/157 (36.94%), Postives = 97/157 (61.78%), Query Frame = 0
Query:   39 FKLALLPDAMGNLEESIHEKLHGMLMKYNQDVGGILLTLSQVRFPPSRRFASMMGDLPHLHVRVEATSLVFTPEPGMSLTGVVIKVTSTHVALLVYGLFNAAIAREDMPDAYAFDYDREAWVGTGGKEVLGLGEEVAFRVVLVHEAAGLIALDGSLR 195
               +L P  + + ++ + ++L+ MLMKY++ V G+LL  + ++      +  ++ + P++HVR+ A +LVF P PGM LT  V KV S H+ LL+ G+FN +IA  +MP  +  +Y  +AWVG     +  + + V FRV+ VH A G+I++DGS+R
Sbjct:    1 MSCSLAPYHIQDPKKGLEDQLNHMLMKYSEPVQGVLLAFNSLQV--INPYGHIINETPYIHVRIAADALVFRPTPGMQLTATVNKVGSNHIGLLLAGVFNVSIAATEMPSGFVHNYHEDAWVGKDSSAI-AVDDAVEFRVLQVHVAHGVISIDGSMR 154          
The following BLAST results are available for this feature:
BLAST of EWM25972.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107867|gb|EWM25972.1|0.000e+0100.00twist neighbor [Nannochloropsis gaditana][more]
gi|298708392|emb|CBJ48455.1|8.105e-3440.45conserved unknown protein [Ectocarpus siliculosus][more]
gi|669157884|ref|XP_008614504.1|1.611e-3340.00hypothetical protein SDRG_10298 [Saprolegnia dicli... [more]
gi|813149771|ref|XP_012200532.1|4.734e-3339.39hypothetical protein SPRG_20002 [Saprolegnia paras... [more]
gi|1173947315|gb|OQR95652.1|6.973e-3238.69nitroreductase family [Thraustotheca clavata][more]
gi|673029598|ref|XP_008868760.1|2.409e-3136.97hypothetical protein H310_05728 [Aphanomyces invad... [more]
gi|1173950115|gb|OQR98094.1|4.011e-3036.36hypothetical protein ACHHYP_09215 [Achlya hypogyna... [more]
gi|673029600|ref|XP_008868761.1|4.875e-3037.97hypothetical protein, variant [Aphanomyces invadan... [more]
gi|698801618|ref|XP_009833838.1|4.948e-3035.76hypothetical protein H257_09342 [Aphanomyces astac... [more]
gi|698801616|ref|XP_009833837.1|7.549e-2936.94hypothetical protein, variant [Aphanomyces astaci]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4713rna4713Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications