rna4694, rna4694 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4694
Unique Name	rna4694
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	813
Alignment location	CM002464.1:87729..89138 -

Link to JBrowse

Properties


Property Name	Value
Product	endoglucanase a
Orig transcript id	gnl\|cribi\|Naga_100151g12.9615.mrna
Orig protein id	gnl\|cribi\|Naga_100151g12.9615
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:87729..89138 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100151g12	gene4533	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4694	rna4694-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25981.1	cds4682	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:87729..89138-
coding sequence from alignment at CM002464.1:87729..89138-

mRNA sequence

>rna4694 ID=rna4694|Name=rna4694|organism=Nannochloropsis gaditana|type=mRNA|length=813bp
AGGAAAATTCCCGGCTTCCTCCGAAAACAAGCACAGGCCTTCCTACGGCA
CCAATGGGAAGGGGGAGGGAGGGAAAGAAGAGGGGAGGAAGCAGAGGGTC
GTACAGTCAGTGGAGGCGGGGGACTTGGCCCTACAAGTGTAGGGAAAGGC
GATTTCGGAGGGAAGGGGAGGGGGTGGGAGGGCTTGGGGGAGGGGGGGGG
GATTATGTATATGACCGTACTCATCGGACCATGTGGGATGAATGGAAACG
GGAAGGAAGGAGGGTGGAGGAGGAGAGGGAAGCGGCTGTATAGACAACGA
AGGAAGACGGTGTGAAGGCGACGGCTGGGGGCTGGGGGTCGAACGGGAGA
GGGGATAAGAGGGAGGGATCCATTTGATCGAAAGGAGGTGTATCTCATAT
GAGGAGGTCCGAGACCCGCTAGTTTGGATTCGTCGCCAGGATGCAGCCAC
CTTGGTGTGCATGCGGGCTTCTGTCGGACGCGTGCATCTCCGTCGTCTTG
CTGGCCGTCTGTGACCGCTTAGGCCAGGCTCTATCTCGAGGGATGAAGAA
TCTTTCCTTTTCTTAACATACGACCCAAAGCGAACGACCTGGGGCACGAG
AAAATTCAGCGGCGGTGCCCCGTTGAGGAGGGTGCCACAGCAATCGTCCT
CCTGGCGTGCGGCAGCCGCGTGGCATGGGGTGTACGGGATCGAAACGCCG
ATACACAGGCTGGCATGTTCCTTTGGGCGGGCGTCCTTTTGTCGATAGGC
GTCCGGAGCCCCTTAGCGTGGGGAAGCAATAGAATTTAAAGATAAAGAAA
AGACCGCACGTGC

protein sequence of rna4694

>rna4694-protein ID=rna4694-protein|Name=rna4694|organism=Nannochloropsis gaditana|type=polypeptide|length=301bp
MKGRMRNIIMLVMASCQIGAGIQSLYGTSPFADEKMQGPQNIPGKVWMAW
FDRGGQNVAYHSYDDVNHGSCELNPCTGVDAVYKNVFRKDEGASTSYTKP
PNGGWPGDRFAGNNSQVPIDQMYWGWNALGNWVRVSLLVQEPGDYTVSLF
GTSNSGGTLLLTVDDYASHGTEAVGVRTGERGGEGPRAVDSRILGVLARS
DPSAVFSPILSSPWFFPPSRHLLDAVRHSCHSPHGRVPSMVPLSRHRRPP
RLASRPGSPHRQCHGDRQLQGGESIWQPALAGFRAERVDVFRCHCPPFFI
D

mRNA from alignment at CM002464.1:87729..89138-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4694 ID=rna4694|Name=rna4694|organism=Nannochloropsis gaditana|type=mRNA|length=1410bp|location=Sequence derived from alignment at CM002464.1:87729..89138- (Nannochloropsis gaditana)
ATGAAAGGCAGAATGAGGAACATTATAATGCTCGTCATGGCCTCGTGTCA
AATAGGGGCAGGCATACAGAGCCTTTATGGGACTTCCCCTTTCGCAGACG
AGAAAATGCAGGGCCCTCAGGTAAGCGTAGTGAGCCGTCCACACACCACA
TGTGGTGGGTAATCCTAGACATGGCTTTCTCATGGCTCGGTCCACGCTCC
GTTCATTCGACAGAATATCCCAGGCAAGGTCTGGATGGCTTGGTTTGATA
GAGGAGGACAAAACGTCGCCTACCACTCTTACGATGATGTAAATCATGGT
TCCTGCGAGCTAAACCCATGCACGGGCGTAGACGCGGTGTACAAAAATGT
CTTTCGAAAGGTACGCATGCGTTGGAACGTAATGGAATAAGAAGATTCGA
GGAAAACCCGGCATGGCAGGACACCAAAAAAGGTCCACCCTTGGACCCTC
GGAGAGGTGCCTTTCTCACCTATTTCAATCCCGCCAGACGTGTCATTCAA
TCTCAAATTTCTCGCCCTTAGGAAAATAACTGTCGTGGCACGAATTGAAA
CCCATGCTTCTACCTCTTTTGTCACCTTCCTCTCCACACAGGACGAAGGC
GCCTCTACCTCCTACACCAAACCTCCGAATGGGGGTTGGCCCGGCGATCG
CTTCGCAGGGAACAACAGCCAGGTGCCCATCGATCAGATGTACTGGGGAT
GGAATGCTCTAGGTAAACTTCCCCTCTTTCTCTCCCTCGCTACTTCCCTC
CCGGTCCAATATTTCCTCTCCTCGGACCCCCTCCCACCCCCGCCCACGCC
TTCCTCCCATGCTCGATCCTCCCTTCGCCCGCGCGTCGTCCTTACACCTC
CCGTACCCCATGCGCCAATCCTCTCCCATCATTTCTGATCAGGTAACTGG
GTGCGTGTCTCCCTTCTCGTCCAGGAGCCTGGGGACTACACGGTCTCCCT
CTTCGGGACCAGCAACAGCGGCGGCACTTTGCTCTTGACTGTGGACGACT
ATGCTAGCCACGGAACCGAGGCGGTCGGTGTCAGGACAGGAGAGAGAGGT
GGAGAAGGGCCAAGGGCGGTAGATTCTCGGATTCTCGGCGTGCTTGCTCG
TTCAGATCCTTCTGCTGTTTTCTCACCCATCTTGTCCTCCCCCTGGTTTT
TCCCTCCCTCCCGCCATCTCTTGGATGCAGTCCGTCACAGCTGCCATTCC
CCCCACGGACGGGTACCATCGATGGTCCCTCTTTCAAGACATCGCCGTCC
TCCCCGCCTTGCGTCGCGGCCCGGCTCTCCTCACCGTCAATGTCACGGGG
ATCGACAACTACAAGGAGGGGAGTCAATTTGGCAACCTGCTCTGGCTGGA
TTTCGTGCGGAGAGGGTAGACGTATTTCGGTGCCATTGTCCTCCCTTTTT
TATTGATTGA

Coding sequence (CDS) from alignment at CM002464.1:87729..89138-

>rna4694 ID=rna4694|Name=rna4694|organism=Nannochloropsis gaditana|type=CDS|length=3624bp|location=Sequence derived from alignment at CM002464.1:87729..89138- (Nannochloropsis gaditana)
GTAACTGGGTGCGTGTCTCCCTTCTCGTCCAGGAGCCTGGGGACTACACG
GTCTCCCTCTTCGGGACCAGCAACAGCGGCGGCACTTTGCTCTTGACTGT
GGACGACTATGCTAGCCACGGAACCGAGGCGGTCGGTGTCAGGACAGGAG
AGAGAGGTGGAGAAGGGCCAAGGGCGGTAGATTCTCGGATTCTCGGCGTG
CTTGCTCGTTCAGATCCTTCTGCTGTTTTCTCACCCATCTTGTCCTCCCC
CTGGTTTTTCCCTCCCTCCCGCCATCTCTTGGATGCAGTCCGTCACAGCT
GCCATTCCCCCCACGGACGGGTACCATCGATGGTCCCTCTTTCAAGACAT
CGCCGTCCTCCCCGCCTTGCGTCGCGGCCCGGCTCTCCTCACCGTCAATG
TCACGGGGATCGACAACTACAAGGAGGGGAGTCAATTTGGCAACCTGCTC
TGGCTGGATTTCGTGCGGAGAGGGTAGACGTATTTCGGTGCCATTGTCCT
CCCTTTTTTATTGATTGAGACGAAGGCGCCTCTACCTCCTACACCAAACC
TCCGAATGGGGGTTGGCCCGGCGATCGCTTCGCAGGGAACAACAGCCAGG
TGCCCATCGATCAGATGTACTGGGGATGGAATGCTCTAGAATATCCCAGG
CAAGGTCTGGATGGCTTGGTTTGATAGAGGAGGACAAAACGTCGCCTACC
ACTCTTACGATGATGTAAATCATGGTTCCTGCGAGCTAAACCCATGCACG
GGCGTAGACGCGGTGTACAAAAATGTCTTTCGAAAGATGAAAGGCAGAAT
GAGGAACATTATAATGCTCGTCATGGCCTCGTGTCAAATAGGGGCAGGCA
TACAGAGCCTTTATGGGACTTCCCCTTTCGCAGACGAGAAAATGCAGGGC
CCTCAGGTAACTGGGTGCGTGTCTCCCTTCTCGTCCAGGAGCCTGGGGAC
TACACGGTCTCCCTCTTCGGGACCAGCAACAGCGGCGGCACTTTGCTCTT
GACTGTGGACGACTATGCTAGCCACGGAACCGAGGCGGTCGGTGTCAGGA
CAGGAGAGAGAGGTGGAGAAGGGCCAAGGGCGGTAGATTCTCGGATTCTC
GGCGTGCTTGCTCGTTCAGATCCTTCTGCTGTTTTCTCACCCATCTTGTC
CTCCCCCTGGTTTTTCCCTCCCTCCCGCCATCTCTTGGATGCAGTCCGTC
ACAGCTGCCATTCCCCCCACGGACGGGTACCATCGATGGTCCCTCTTTCA
AGACATCGCCGTCCTCCCCGCCTTGCGTCGCGGCCCGGCTCTCCTCACCG
TCAATGTCACGGGGATCGACAACTACAAGGAGGGGAGTCAATTTGGCAAC
CTGCTCTGGCTGGATTTCGTGCGGAGAGGGTAGACGTATTTCGGTGCCAT
TGTCCTCCCTTTTTTATTGATTGAGACGAAGGCGCCTCTACCTCCTACAC
CAAACCTCCGAATGGGGGTTGGCCCGGCGATCGCTTCGCAGGGAACAACA
GCCAGGTGCCCATCGATCAGATGTACTGGGGATGGAATGCTCTAGAATAT
CCCAGGCAAGGTCTGGATGGCTTGGTTTGATAGAGGAGGACAAAACGTCG
CCTACCACTCTTACGATGATGTAAATCATGGTTCCTGCGAGCTAAACCCA
TGCACGGGCGTAGACGCGGTGTACAAAAATGTCTTTCGAAAGATGAAAGG
CAGAATGAGGAACATTATAATGCTCGTCATGGCCTCGTGTCAAATAGGGG
CAGGCATACAGAGCCTTTATGGGACTTCCCCTTTCGCAGACGAGAAAATG
CAGGGCCCTCAGGTAACTGGGTGCGTGTCTCCCTTCTCGTCCAGGAGCCT
GGGGACTACACGGTCTCCCTCTTCGGGACCAGCAACAGCGGCGGCACTTT
GCTCTTGACTGTGGACGACTATGCTAGCCACGGAACCGAGGCGGTCGGTG
TCAGGACAGGAGAGAGAGGTGGAGAAGGGCCAAGGGCGGTAGATTCTCGG
ATTCTCGGCGTGCTTGCTCGTTCAGATCCTTCTGCTGTTTTCTCACCCAT
CTTGTCCTCCCCCTGGTTTTTCCCTCCCTCCCGCCATCTCTTGGATGCAG
TCCGTCACAGCTGCCATTCCCCCCACGGACGGGTACCATCGATGGTCCCT
CTTTCAAGACATCGCCGTCCTCCCCGCCTTGCGTCGCGGCCCGGCTCTCC
TCACCGTCAATGTCACGGGGATCGACAACTACAAGGAGGGGAGTCAATTT
GGCAACCTGCTCTGGCTGGATTTCGTGCGGAGAGGGTAGACGTATTTCGG
TGCCATTGTCCTCCCTTTTTTATTGATTGAGACGAAGGCGCCTCTACCTC
CTACACCAAACCTCCGAATGGGGGTTGGCCCGGCGATCGCTTCGCAGGGA
ACAACAGCCAGGTGCCCATCGATCAGATGTACTGGGGATGGAATGCTCTA
GAATATCCCAGGCAAGGTCTGGATGGCTTGGTTTGATAGAGGAGGACAAA
ACGTCGCCTACCACTCTTACGATGATGTAAATCATGGTTCCTGCGAGCTA
AACCCATGCACGGGCGTAGACGCGGTGTACAAAAATGTCTTTCGAAAGAT
GAAAGGCAGAATGAGGAACATTATAATGCTCGTCATGGCCTCGTGTCAAA
TAGGGGCAGGCATACAGAGCCTTTATGGGACTTCCCCTTTCGCAGACGAG
AAAATGCAGGGCCCTCAGGTAACTGGGTGCGTGTCTCCCTTCTCGTCCAG
GAGCCTGGGGACTACACGGTCTCCCTCTTCGGGACCAGCAACAGCGGCGG
CACTTTGCTCTTGACTGTGGACGACTATGCTAGCCACGGAACCGAGGCGG
TCGGTGTCAGGACAGGAGAGAGAGGTGGAGAAGGGCCAAGGGCGGTAGAT
TCTCGGATTCTCGGCGTGCTTGCTCGTTCAGATCCTTCTGCTGTTTTCTC
ACCCATCTTGTCCTCCCCCTGGTTTTTCCCTCCCTCCCGCCATCTCTTGG
ATGCAGTCCGTCACAGCTGCCATTCCCCCCACGGACGGGTACCATCGATG
GTCCCTCTTTCAAGACATCGCCGTCCTCCCCGCCTTGCGTCGCGGCCCGG
CTCTCCTCACCGTCAATGTCACGGGGATCGACAACTACAAGGAGGGGAGT
CAATTTGGCAACCTGCTCTGGCTGGATTTCGTGCGGAGAGGGTAGACGTA
TTTCGGTGCCATTGTCCTCCCTTTTTTATTGATTGAGACGAAGGCGCCTC
TACCTCCTACACCAAACCTCCGAATGGGGGTTGGCCCGGCGATCGCTTCG
CAGGGAACAACAGCCAGGTGCCCATCGATCAGATGTACTGGGGATGGAAT
GCTCTAGAATATCCCAGGCAAGGTCTGGATGGCTTGGTTTGATAGAGGAG
GACAAAACGTCGCCTACCACTCTTACGATGATGTAAATCATGGTTCCTGC
GAGCTAAACCCATGCACGGGCGTAGACGCGGTGTACAAAAATGTCTTTCG
AAAGATGAAAGGCAGAATGAGGAACATTATAATGCTCGTCATGGCCTCGT
GTCAAATAGGGGCAGGCATACAGAGCCTTTATGGGACTTCCCCTTTCGCA
GACGAGAAAATGCAGGGCCCTCAG

Synonyms

Publications