EWM26007.1, cds4667 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|585107920|gb|EWM26007.1| (c2h2 zinc finger [Nannochloropsis gaditana]) HSP 1 Score: 283.108 bits (723), Expect = 1.214e-96 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MQQGNGGAQSPGDPAGPLPPLQPSSSASSAGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKRRGGGRGGEGDKWNKGAKL 139
MQQGNGGAQSPGDPAGPLPPLQPSSSASSAGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKRRGGGRGGEGDKWNKGAKL
Sbjct: 1 MQQGNGGAQSPGDPAGPLPPLQPSSSASSAGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKRRGGGRGGEGDKWNKGAKL 139
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|553191399|ref|XP_005855374.1| (c2h2 zinc finger protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293686|gb|EKU20986.1| c2h2 zinc finger protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 185.652 bits (470), Expect = 1.073e-58 Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0
Query: 32 AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKR 121
AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKL+FCRLCRKQFTSMEQMKSHLKGKPHQELLMKR
Sbjct: 1 AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLSFCRLCRKQFTSMEQMKSHLKGKPHQELLMKR 90
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|298710694|emb|CBJ32118.1| (C2H2 zinc finger protein [Ectocarpus siliculosus]) HSP 1 Score: 101.679 bits (252), Expect = 5.521e-23 Identity = 52/94 (55.32%), Postives = 63/94 (67.02%), Query Frame = 0
Query: 33 GLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELL---MKRRG 123
GL V ELL+NY+ SSER PFYCR+C+FQG SLE L HK+ LH A + ERK+ C LC+KQFTS Q++ HL GK H E L M R+G
Sbjct: 180 GLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLHVEAAKKERKICKCLLCKKQFTSPPQLQEHLAGKAHLEKLQSTMSRQG 273
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|1072227644|gb|OEU12383.1| (hypothetical protein FRACYDRAFT_244648 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 100.138 bits (248), Expect = 9.086e-23 Identity = 50/99 (50.51%), Postives = 59/99 (59.60%), Query Frame = 0
Query: 28 SSAGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKRRGGGR 126
S+ GL V E+L Y SSE+ PFYCR C Q ++ ED HK E H+ A E K TFC+LCRKQFTS QMK HL +PH+E L K R G R
Sbjct: 197 SAEKRGLEMKVQEILGGYTARSSEKLPFYCRFCSKQYENKEDFYEHKNFEFHKTAVAMETKATFCKLCRKQFTSPVQMKEHLSSRPHKERLQKSRDGQR 295
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|219111619|ref|XP_002177561.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410446|gb|EEC50375.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 92.4337 bits (228), Expect = 3.978e-20 Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 0
Query: 30 AGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELL 118
+GL V E+L Y P SSER PFYCR+C Q + HK+ E H A E ERK ++C+LCRKQ TS Q++ HL +PH+E L
Sbjct: 140 VSSGLEAAVKEVLDGYVPRSSERLPFYCRVCAQQMSDEDSFTAHKETEFHTTAVEMERKRSYCKLCRKQLTSPAQLQEHLSSRPHRERL 228
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|397646265|gb|EJK77198.1| (hypothetical protein THAOC_00988 [Thalassiosira oceanica]) HSP 1 Score: 94.3597 bits (233), Expect = 7.355e-20 Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 0
Query: 33 GLAQTVAELLSNYQPASSERRP-FYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELL----MKRRGGGR 126
GL V ELL++Y PAS RP FYCR+CR Q S E+ H+ +LH A E+K T+C+LCRKQ TS+ QM+ HLK +PH+ + ++RG GR
Sbjct: 265 GLRSAVRELLADYVPASQLDRPAFYCRVCRHQSSSKEEFDAHRSTQLHEAAVREEKKKTYCKLCRKQLTSLVQMEEHLKSRPHRAKMDAVKARQRGTGR 363
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|223997896|ref|XP_002288621.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975729|gb|EED94057.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 90.8929 bits (224), Expect = 8.442e-19 Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 0
Query: 29 SAGAGLAQTVAELLSNYQPASS-ERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKRRGGGRGG 128
+ GL V +LLSNY+ S ++ PFYCR+C+ Q + + HK + H +A + E+K T+C++CRKQ TS+ Q + HL KPH+E L RG R G
Sbjct: 246 TINEGLKSAVHDLLSNYKTRSEFQQPPFYCRVCQHQSKDEAEFLAHKASDFHEVAMKEEKKKTYCKMCRKQMTSVVQFEEHLNSKPHKEQLDYLRGKQRSG 346 The following BLAST results are available for this feature:
BLAST of EWM26007.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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