EWM26007.1, cds4667 (CDS) Nannochloropsis gaditana

Overview
NameEWM26007.1
Unique Namecds4667
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:48831..49250 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26007.1
Productc2h2 zinc finger
Orig transcript idgnl|cribi|Naga_100499g5.1690.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:48831..49250 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007087Znf_C2H2
IPR003604Znf_U1
IPR015880Znf_C2H2-like
Homology
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|585107920|gb|EWM26007.1| (c2h2 zinc finger [Nannochloropsis gaditana])

HSP 1 Score: 283.108 bits (723), Expect = 1.214e-96
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query:    1 MQQGNGGAQSPGDPAGPLPPLQPSSSASSAGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKRRGGGRGGEGDKWNKGAKL 139
            MQQGNGGAQSPGDPAGPLPPLQPSSSASSAGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKRRGGGRGGEGDKWNKGAKL
Sbjct:    1 MQQGNGGAQSPGDPAGPLPPLQPSSSASSAGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKRRGGGRGGEGDKWNKGAKL 139          
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|553191399|ref|XP_005855374.1| (c2h2 zinc finger protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293686|gb|EKU20986.1| c2h2 zinc finger protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 185.652 bits (470), Expect = 1.073e-58
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 0
Query:   32 AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKR 121
            AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKL+FCRLCRKQFTSMEQMKSHLKGKPHQELLMKR
Sbjct:    1 AGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLSFCRLCRKQFTSMEQMKSHLKGKPHQELLMKR 90          
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|298710694|emb|CBJ32118.1| (C2H2 zinc finger protein [Ectocarpus siliculosus])

HSP 1 Score: 101.679 bits (252), Expect = 5.521e-23
Identity = 52/94 (55.32%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   33 GLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELL---MKRRG 123
            GL   V ELL+NY+  SSER PFYCR+C+FQG SLE L  HK+  LH  A + ERK+  C LC+KQFTS  Q++ HL GK H E L   M R+G
Sbjct:  180 GLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLHVEAAKKERKICKCLLCKKQFTSPPQLQEHLAGKAHLEKLQSTMSRQG 273          
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|1072227644|gb|OEU12383.1| (hypothetical protein FRACYDRAFT_244648 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 100.138 bits (248), Expect = 9.086e-23
Identity = 50/99 (50.51%), Postives = 59/99 (59.60%), Query Frame = 0
Query:   28 SSAGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKRRGGGR 126
            S+   GL   V E+L  Y   SSE+ PFYCR C  Q ++ ED   HK  E H+ A   E K TFC+LCRKQFTS  QMK HL  +PH+E L K R G R
Sbjct:  197 SAEKRGLEMKVQEILGGYTARSSEKLPFYCRFCSKQYENKEDFYEHKNFEFHKTAVAMETKATFCKLCRKQFTSPVQMKEHLSSRPHKERLQKSRDGQR 295          
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|219111619|ref|XP_002177561.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410446|gb|EEC50375.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 92.4337 bits (228), Expect = 3.978e-20
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 0
Query:   30 AGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELL 118
              +GL   V E+L  Y P SSER PFYCR+C  Q    +    HK+ E H  A E ERK ++C+LCRKQ TS  Q++ HL  +PH+E L
Sbjct:  140 VSSGLEAAVKEVLDGYVPRSSERLPFYCRVCAQQMSDEDSFTAHKETEFHTTAVEMERKRSYCKLCRKQLTSPAQLQEHLSSRPHRERL 228          
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|397646265|gb|EJK77198.1| (hypothetical protein THAOC_00988 [Thalassiosira oceanica])

HSP 1 Score: 94.3597 bits (233), Expect = 7.355e-20
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 0
Query:   33 GLAQTVAELLSNYQPASSERRP-FYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELL----MKRRGGGR 126
            GL   V ELL++Y PAS   RP FYCR+CR Q  S E+   H+  +LH  A   E+K T+C+LCRKQ TS+ QM+ HLK +PH+  +     ++RG GR
Sbjct:  265 GLRSAVRELLADYVPASQLDRPAFYCRVCRHQSSSKEEFDAHRSTQLHEAAVREEKKKTYCKLCRKQLTSLVQMEEHLKSRPHRAKMDAVKARQRGTGR 363          
BLAST of EWM26007.1 vs. NCBI_GenBank
Match: gi|223997896|ref|XP_002288621.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975729|gb|EED94057.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 90.8929 bits (224), Expect = 8.442e-19
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 0
Query:   29 SAGAGLAQTVAELLSNYQPASS-ERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFTSMEQMKSHLKGKPHQELLMKRRGGGRGG 128
            +   GL   V +LLSNY+  S  ++ PFYCR+C+ Q +   +   HK  + H +A + E+K T+C++CRKQ TS+ Q + HL  KPH+E L   RG  R G
Sbjct:  246 TINEGLKSAVHDLLSNYKTRSEFQQPPFYCRVCQHQSKDEAEFLAHKASDFHEVAMKEEKKKTYCKMCRKQMTSVVQFEEHLNSKPHKEQLDYLRGKQRSG 346          
The following BLAST results are available for this feature:
BLAST of EWM26007.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585107920|gb|EWM26007.1|1.214e-96100.00c2h2 zinc finger [Nannochloropsis gaditana][more]
gi|553191399|ref|XP_005855374.1|1.073e-5898.89c2h2 zinc finger protein, partial [Nannochloropsis... [more]
gi|298710694|emb|CBJ32118.1|5.521e-2355.32C2H2 zinc finger protein [Ectocarpus siliculosus][more]
gi|1072227644|gb|OEU12383.1|9.086e-2350.51hypothetical protein FRACYDRAFT_244648 [Fragilario... [more]
gi|219111619|ref|XP_002177561.1|3.978e-2047.19predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397646265|gb|EJK77198.1|7.355e-2047.47hypothetical protein THAOC_00988 [Thalassiosira oc... [more]
gi|223997896|ref|XP_002288621.1|8.442e-1941.58predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4679rna4679Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications