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Properties
| Property Name | Value |
|---|
| Product | c2h2 zinc finger |
| Orig transcript id | gnl|cribi|Naga_100499g5.1690.mrna |
| Orig protein id | gnl|cribi|Naga_100499g5.1690 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:47625..49694 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4679 ID=rna4679|Name=rna4679|organism=Nannochloropsis gaditana|type=mRNA|length=1647bp
ATAGCACGTTCTCCACAGAATCAGAGGCCGTCGTCATTGGCAGGTTTGCG
CTACAGGAACAGCGGGCACGCGCTGTGTATTTCGGTGGGTAGGGTGGGTG
GGTGTGGGAGTATGTGGTCGGAGGGTGAAGAGGTTTCGAGATCTTCATGG
CCTGGGTTTCCATTACTGTGCGTGTCTCACTTCCCTTGATCGCTTTGTTT
TATCACATTGGTTACCTTCGCGTTCATGGATATGAATTGGGATCGTGTCT
CCCACTTGTGAGTTCTCTCTCTATGCGTGCTCCCTCCCCACTTGGCGTTG
GCTTTTCTCACCAACGGCACTTTTTCCTCAGTCCAATAAAGCGCATGTCT
TACGGTTGCTCTGATGCGAATTCTCTCTCCTGTTATTGGTGAGGAATTAA
ATTCCACGATTCCGATCATATGCTGAGGAACTTTTTAAAACACCAAACGG
TGGCTGAGCAATACATCAAGAAGTCCTTTATTGGCGTTGGGGGAATTCTC
TGACCTAGAAAATCCTAAATTGATAACAATCGTCCCAATTCGTCATAATT
CTAACGGCGATCCCCGCACATTGCTTTCGCCTCCACTCTTACCTCCGTAG
CATGCCGCGAAGTCGACGGGCAATAAAAAAGGGAATGAGAGAGCACAGCC
TCTCCCGCCGGAGCGGCTCCCGCCTCATCAGCGCCTGCATAGGTGAGCCG
TATCGATGTTTACGGGAAGAGTAGATGGGCGTCTTTGGATGGAGCTGGGA
GGGTCCTGGTGGGAAGCGAGGTGGACAGAAACCAATTGACGTTCGTGTGT
ATCCGCCCTGCACTATTGAGAGAAGTCGACGGTAGTGATGCTCCTTCTGC
GATTCTGAACACACGCCTTGTCCTCCTGCTCCCTCAAAATGAGGGCGTGA
GGGTGGTGACGTGATTTTACCATATCAATAAAGTTTACCTTCGCCGGTAG
CTCCTTCTGAACCGTCTCGACCCCCCGTCGCGTTCCCCTATGCCTCCTCT
TTGTCGTGCTCGGCTGCCATTCTGGGAAGGCCGGAGACCTGTTGGCACTA
ACTTGGGATTGGGACTTACACCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCTGTCCAT
CAGCCATAATGCTCCGGCTTTCGTGCAGGAGCGAGAGGGCTGCTGCTTTC
CTACCAGCCACCTCCTCCTTTTCTTCCTCCTCTCTTCCTTCTTGTTCAAG
GAGAGGGAGGACGCGTTTCCTTACTCCCTCCTCCTTTCCTTCCTCCCCTC
TTCCTTCTTGGTCAAGGAGAGGGAGGACGCGTTCCCTCACCCCTCTTCCT
GCCAGGGCGGTCGGAGGGGGAGGGGAGGGAGGGAAGAGGAAGCCCAAAGG
GAAGAAGAAGGGCGAGGAGGAGGAGAAAGAGGATCTCATGAAAGAGTGGG
GGGGCAATTTTGTGGGCCGGAAGAAGCTTTTCAGCGCCCCGACAAAGGGT
GGAGGGGAGGAAGGGCAAGGGCTGAAGGCAGCGGGCGGAGGAAGGGTAGG
AGGGGGAGAAAAAGGGGGGCCGGTGGCGCGCTCGAGTGGGGACCAACTCA
AGAAGCTGAGCAAGACCGGTCGGCAGGTGAGGAGGGAGGGAGGGAGG back to topprotein sequence of rna4679 >rna4679-protein ID=rna4679-protein|Name=rna4679|organism=Nannochloropsis gaditana|type=polypeptide|length=139bp
MQQGNGGAQSPGDPAGPLPPLQPSSSASSAGAGLAQTVAELLSNYQPASS
ERRPFYCRICRFQGQSLEDLAHHKKGELHRLAQESERKLTFCRLCRKQFT
SMEQMKSHLKGKPHQELLMKRRGGGRGGEGDKWNKGAKL back to topmRNA from alignment at CM002464.1:47625..49694+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4679 ID=rna4679|Name=rna4679|organism=Nannochloropsis gaditana|type=mRNA|length=2070bp|location=Sequence derived from alignment at CM002464.1:47625..49694+ (Nannochloropsis gaditana)
GACGTCTGTTTAAGAGCTAAAATTGCACGGACATGGTGTACTGCCTCTAA
TACTGGCTTCGTAACATTGTGTGCAGCAGTTTATCTACGCAGGAGGGTAG
AGGTATATCGTCCTGCTGGTTTATTTCTTTCGATCGGCTCCTGCGCATAC
GTAGCGCTAACATCCCACCTccccactctcctcctcgtgcccTACTTGGC
GTGAACTTCAGTCGCACCAACGGGCATGAGAGAGCGACCAGCAGATCATG
TAAGCAGGAAGCGGCAGCGAAATGCAACAACACTTGATTCTTTCGCGGTT
TCTGATGCCTTGACGACCAAGTCTGCGCCGTATTCCAagtctcctccagc
accgccatATCAGCCCGCGAATAAAACCACGCTCTTGCCCATTGGGCTTC
GATTGCGACGGGAGAAACAACGTGCACGAAAGGTTAAATGTAATCAAGTG
GAATCCGAAAAGGGcgatgagggagaaaaggtAAACAAGGGCAAAAGCCA
CATTTTTCCTCGAACTTTGGAAAGGGATGCGGTCGGTTTGTGTGGTCAAC
TAAGTTTAAGACGTACCCACATGCGCACTGCACACCAAAATAGGtagaaa
atggagggagcaAGAATGGACAAAGAGTGGACTTGTCGGAAGAAAGTAGC
CTGGATATGCTCCTAGATTCATCGGATGAGGAGATTGccgacgatgagga
tggtAGGTTTCCTTCCTGCAGTATGGTTCCCAAacctttttcttgctcgt
AGGTGTATAATATGCAGTGCTTGATACACAGCCTCACTATTACTCTCATT
TTCTTGCTTACGTGCGGCCGCAGGGGGTTCTGCTCGACAGAAAATCCGAC
TGAATGACTTGGATGCCCGGCTTGCCGCGCTGGAAAAAGAActatcctct
tcttcctcttcatcctcctcctcctcctcgtcgtcgtcttcctcctcgcc
ttttccctcaaatgaggagggaataCCTGATTTtgagaaagcggaggaat
CTGAAGGCCTGATCatcgagaaaggaggggctgtCTTGAAAAGTCGCCTC
GCCAAGGAGGcagccatccctcctctccctcctcacctcctcccactccc
tgaatgtaagggaaaagggggcggTCGCGTCCCTTTGCCGGATTCGGACG
GACGttccgggggaaggaaacgccTGACCCGCAAGGAGAAGATAGCCAGC
GACAGGATGCAACAAGGAAACGGTGGTGCGCAAAGCCCCGGGGATCCAGC
aggtcccctccctcctttacAGCCGTCCTCTTCTGCTTCATCGGCCGGTG
CAGGGCTAGCGCAAACCGTGGCTGAGCTTCTTTCCAATTATCAGCCGGCG
TCAAGTGAGCGTCGGCCGTTCTACTGTCGGATTTGCCGATTTCAGGGTCA
ATCCCTCGAGGATCTAGCGCATCACAAGAAAGGGGAATTACACCGCTTGG
CCCAAGAGAGCGAACGAAAACTCACCTTTTGCCGACTGTGTCGCAAGCAA
TTTACCAGCATGGAGCAAATGAAAAGTCATTTGAAAGGGAAGCCCCATCA
AGAGCTTCtcatgaaaaggagggggggaggaagagggggggaaggagaca
agtGGAACAAAGGTGCTAAGCTGTGATCAAGAATCATTTTCCTAGCACTT
TTCATCGTTGAATTGGAAAAAAGTTTTTACAAATATATTCTATCGTTTTC
GACTTCCGCAACGCATCGCACATAATGATCTtattgcccccctccccccc
ttcaccaTTGACCAGCAATAAAAATAAAGACGACGCTGTTAAGGAGTGGA
AGAGTCTTGCCAAGCGTACATCTGACACTTCAAAGCAGGCATGACGGCGG
GCACCCCCTAACGAGATTTATGTGCTCCATCTATGGCGTTGATACCCATC
AAATCATTAAACGTGGATAATTTAATTTATCACATAATTGACGTTTTACA
CAGAATTCACAGTGATGTTACAAATATAGCCCTGGAGACGATACTATCAC
TGTTGAACAAAACTGGTAAAAACACATACACGGACAGCTAAGAGACTGCG
AAAGAGCTCAATCACTTGCG back to topCoding sequence (CDS) from alignment at CM002464.1:47625..49694+ >rna4679 ID=rna4679|Name=rna4679|organism=Nannochloropsis gaditana|type=CDS|length=420bp|location=Sequence derived from alignment at CM002464.1:47625..49694+ (Nannochloropsis gaditana)
ATGCAACAAGGAAACGGTGGTGCGCAAAGCCCCGGGGATCCAGCaggtcc
cctccctcctttacAGCCGTCCTCTTCTGCTTCATCGGCCGGTGCAGGGC
TAGCGCAAACCGTGGCTGAGCTTCTTTCCAATTATCAGCCGGCGTCAAGT
GAGCGTCGGCCGTTCTACTGTCGGATTTGCCGATTTCAGGGTCAATCCCT
CGAGGATCTAGCGCATCACAAGAAAGGGGAATTACACCGCTTGGCCCAAG
AGAGCGAACGAAAACTCACCTTTTGCCGACTGTGTCGCAAGCAATTTACC
AGCATGGAGCAAATGAAAAGTCATTTGAAAGGGAAGCCCCATCAAGAGCT
TCtcatgaaaaggagggggggaggaagagggggggaaggagacaagtGGA
ACAAAGGTGCTAAGCTGTGA back to top
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