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Properties
| Property Name | Value |
|---|
| Product | Autophagy-related protein 1010 family protein |
| Orig transcript id | gnl|cribi|Naga_100150g12.10687.mrna |
| Orig protein id | gnl|cribi|Naga_100150g12.10687 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:33548..35944 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4676 ID=rna4676|Name=rna4676|organism=Nannochloropsis gaditana|type=mRNA|length=1326bp
AAAAGAGCGCGGGACCTCGCCTCCTGCCGTCGTGCCAGTTTAATCTTGTG
ATTTACAAGGACACATCCCCATTCAGACCAACGAATCGTCGTCCATCCCC
ACGTCTAGATTTGCACGCACGCACAGCACGCAGTCACGTAGTGGACGTCT
GTTGTCAAGCTTGCCTGCGGGTGAGCCGGGCCTGGCGCAAGCCTCTTGCT
GTAGAGGGAGGACTGAAGACACATGAACCACAAGGAGCATGTGTTGGGGG
AGCTAGAACTTCGCCCCCTTCATACCAAAGAGGCGTTACAATGTCTACTG
CATTCAATTATATTCCTACGTGCACCAAATATAGTGCGGCCACGCGAGGT
ACACTGCCGGCACCTTCGACTGTCCTACCCTAAGGTGGAGCGTCCTACCT
CCTCCTCCTCCTCGTCGTCCCCCTTCTCCGTTGCACGCATCGATGAGGTT
GTGGACAGCGCCCTTGACGCATGCCTTCGAAATTTGACCCCGGCAGGGCC
CAATTTGAGCAGAGGCCACCTTGTCCTCACCTTTTACGAGCGTCGCCAGA
CCCTTTCTTTCTTCCGGCTGATCCAGAACGAAGAGCGGGTCGTCTTTGAA
GAGTGGATCATACCTTTCCTCGTGGACAGCATGGGATCCACCAGCACCCT
CGCCTCCTCCCTCTCCGCCTCGGACGACGGCTTTGTGGGCGTCCATGACG
GCGAGCTTTACACCGAGCCTTCCTCCCACAGCTCCATGTCTACGCTCCCT
CCCGCATCCCTGTATGGCGGGGGAGGGGAGGATCCCGCAATAGCGGTCGA
ACAGCAGCGGGCCCAAGCGCGCACGGAGGCCCTTCTCCGCTCTCGCCTGC
AGGATATATACACCCTCGTGAATGGAAGCATCGATCACATCCCTCCAGTC
AGTTATTTGTTTCAGATCTCTCACGGCGCAGCGTCTAGGGATCGAGCGCA
AGACTTGGCGACCAAAATCAGAAATAGCCCCGCTCTTATCAACAACAGCT
TGTGAATATGCACAGCATCGGCGCGGTCGTGGATGTACAATACAAAGGGC
AACCACTTTAGCGCTGGGATCATGTAGACAGGCTGTAAAGAATAACTTAT
GCACATGGTTGCTTACCCTTTCCAAACATTTGATTTGATCGGTCGCTCGC
TTGATGTGTCCTCGGTGCTACGTCTAGGAGGCAGCGCAACACTTGCTCCC
TTCCTGGGACGGTCTAATCATAGACAGATGTGATGCCTTCCATCCTCGTT
GTGAGCCTATCAAGTATTTTACATCCCAAACCAGACCCAAAGGAACGTTC
AAATATACACCTCTGTTTCGAAAAAT back to topprotein sequence of rna4676 >rna4676-protein ID=rna4676-protein|Name=rna4676|organism=Nannochloropsis gaditana|type=polypeptide|length=232bp
MNHKEHVLGELELRPLHTKEALQCLLHSIIFLRAPNIVRPREVHCRHLRL
SYPKVERPTSSSSSSSPFSVARIDEVVDSALDACLRNLTPAGPNLSRGHL
VLTFYERRQTLSFFRLIQNEERVVFEEWIIPFLVDSMGSTSTLASSLSAS
DDGFVGVHDGELYTEPSSHSSMSTLPPASLYGGGGEDPAIAVEQQRAQAR
TEALLRSRLQDIYTLVNGSIDHIPPVSYLFQV back to topmRNA from alignment at CM002464.1:33548..35944- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4676 ID=rna4676|Name=rna4676|organism=Nannochloropsis gaditana|type=mRNA|length=2397bp|location=Sequence derived from alignment at CM002464.1:33548..35944- (Nannochloropsis gaditana)
AAAAGAGCGCGGGACCTCGCCTCCTGCCGTCGTGCCAGTTTAATCTTGTG
ATTTACAAGGACACATCCCCATTCAGACCAACGAATCGTCGTCCATCCCC
ACGTCTAGATTTGCACGCACGCACAGCACGCAGTCACGTAGTGGACGTCT
GTTGTCAAGCTTGCCTGCGGGTGAGCCGGGCCTGGCGCAAGCCTCTTGCT
GTAGAGGGAGGACTGAAGACACATGAACCACAAGGAGCATGTGTTGGGGG
AGCTAGAACTTCGCCCCCTTCATACCAAAGAGGCGTTACAATGTCTACTG
CATTCAATTATATTCCTACGTGCACCAAATATAGTGCGGCCACGCGAGGT
AGTGTTGACGTGGTGGGAGAATCTAAGTTACGAAGGCGGGGCAAGGGGGG
AGAGTGCGCGTATCGTGTATTGCCAGGCGTGGAGAAGCGCGCCTGCCTGC
TCCATATGATGATTCGCGCCGGCAACTTTTGGAACTAAGTACAGGCAACG
CAGGGATGAAATGGCTTATAAATATTCGACCAATCGATCACCTTAATTGA
ACCTTTCGGGATGCAGTTGATATGAGTTTTGCGTCTACCCTTTGACATGC
ACCACGTGTGACGTTGTAACGACTCTTTTCGACCCTATTCCAGGTACACT
GCCGGCACCTTCGACTGTCCTACCCTAAGGTGGAGCGTCCTACCTCCTCC
TCCTCCTCGTCGTCCCCCTTCTCCGTTGCACGCATCGATGAGGTTGTGGA
CAGCGCCCTTGACGCATGCCTTCGAAATTTGACCCCGGCAGGGCCCAATT
TGAGCAGAGGTGCGGACATGGAAAAATAGCCTGTTAGGGTTAAAAAAATA
GCCGTGCCGTACGCGATGTAGATGTTTTTCGTGGTCTCTTTCTCAGAGAA
GCTCACTGACATTTGTTCGGGGGTTTTCTCCCTCTGACAGGCCACCTTGT
CCTCACCTTTTACGAGCGTCGCCAGACCCTTTCTTTCTTCCGGCTGATCC
AGAACGAAGAGCGGGTCGTCTTTGAAGAGTGGATCATACCTTTCCTCGTG
GACAGCATGGGTAAGTGTGGAGATGGGTAGGGTCTCGGAACGTATCTCGA
GGTCTGGCGTCATGCTACTCGCATCTCTTCCTATCGGCCGTTCCCTTTCA
CGCTCAACAAGACGACTCGACGCCCGAAGACACTTGTACCCTCTCAATCC
TTACGTCATGCTCTTGTCGTGGATCAAATCTCTCATCTTCTCAGGATCCA
CCAGCACCCTCGCCTCCTCCCTCTCCGCCTCGGACGACGGCTTTGTGGGC
GTCCATGACGGCGAGCTTTACACCGAGCCTTCCTCCCACAGCTCCATGTC
TACGCTCCCTCCCGCATCCCTGTATGGCGGGGGAGGGGAGGATCCCGCAA
TAGGTAAGATAATCTGATTCTTCGTGTCACTCCCCTCTGTGGGGCGGGAA
GGCACGAATTTCTGTTGACCATACCTCTCCTGGGGCTTTTCTATGTCCCT
CTCTGCACCTCTTTCTTACTCTCTCCCTCCTGACCTCCCTTCTCTTCCAC
ACCTGGCCTGCCAGCGGTCGAACAGCAGCGGGCCCAAGCGCGCACGGAGG
CCCTTCTCCGCTCTCGCCTGCAGGATATATACACCCTCGTGAATGGAAGC
ATCGATCACATCCCTCCAGTCAGTTATTTGTTTCAGGTTTGAAGGAGGGG
GGGGAAGCGGTAAAAAAAAGGGTGGCCTTCAGCGGCAAATGGAATGGAAG
TGTACTCTGAACCAGAACTGAAGTGAAAAGAAATGAGCAGTGCTGCTTTT
TTCCAAAAGTTTCAACTACTTGAAAATGTGGGCTTGCTTCGTGATACAAT
TGCATGGGTATATCTTTGGATTTTGTGCAAATGTTAGTACTGTACTACCT
TGTGATGGCGTCGATCGTTTGTTTCAGTACCCGTCCTTATGTCCACTGTC
TGAACGCTGATGACCCTCTTCCTAACCTTGATCCAGATCTCTCACGGCGC
AGCGTCTAGGGATCGAGCGCAAGACTTGGCGACCAAAATCAGAAATAGCC
CCGCTCTTATCAACAACAGCTTGTGAATATGCACAGCATCGGCGCGGTCG
TGGATGTACAATACAAAGGGCAACCACTTTAGCGCTGGGATCATGTAGAC
AGGCTGTAAAGAATAACTTATGCACATGGTTGCTTACCCTTTCCAAACAT
TTGATTTGATCGGTCGCTCGCTTGATGTGTCCTCGGTGCTACGTCTAGGA
GGCAGCGCAACACTTGCTCCCTTCCTGGGACGGTCTAATCATAGACAGAT
GTGATGCCTTCCATCCTCGTTGTGAGCCTATCAAGTATTTTACATCCCAA
ACCAGACCCAAAGGAACGTTCAAATATACACCTCTGTTTCGAAAAAT back to topCoding sequence (CDS) from alignment at CM002464.1:33548..35944- >rna4676 ID=rna4676|Name=rna4676|organism=Nannochloropsis gaditana|type=CDS|length=3495bp|location=Sequence derived from alignment at CM002464.1:33548..35944- (Nannochloropsis gaditana)
CGGTCGAACAGCAGCGGGCCCAAGCGCGCACGGAGGCCCTTCTCCGCTCT
CGCCTGCAGGATATATACACCCTCGTGAATGGAAGCATCGATCACATCCC
TCCAGTCAGTTATTTGTTTCAGGTTTGAGATCCACCAGCACCCTCGCCTC
CTCCCTCTCCGCCTCGGACGACGGCTTTGTGGGCGTCCATGACGGCGAGC
TTTACACCGAGCCTTCCTCCCACAGCTCCATGTCTACGCTCCCTCCCGCA
TCCCTGTATGGCGGGGGAGGGGAGGATCCCGCAATAGGCCACCTTGTCCT
CACCTTTTACGAGCGTCGCCAGACCCTTTCTTTCTTCCGGCTGATCCAGA
ACGAAGAGCGGGTCGTCTTTGAAGAGTGGATCATACCTTTCCTCGTGGAC
AGCATGGGTACACTGCCGGCACCTTCGACTGTCCTACCCTAAGGTGGAGC
GTCCTACCTCCTCCTCCTCCTCGTCGTCCCCCTTCTCCGTTGCACGCATC
GATGAGGTTGTGGACAGCGCCCTTGACGCATGCCTTCGAAATTTGACCCC
GGCAGGGCCCAATTTGAGCAGAGATGAACCACAAGGAGCATGTGTTGGGG
GAGCTAGAACTTCGCCCCCTTCATACCAAAGAGGCGTTACAATGTCTACT
GCATTCAATTATATTCCTACGTGCACCAAATATAGTGCGGCCACGCGAGC
GGTCGAACAGCAGCGGGCCCAAGCGCGCACGGAGGCCCTTCTCCGCTCTC
GCCTGCAGGATATATACACCCTCGTGAATGGAAGCATCGATCACATCCCT
CCAGTCAGTTATTTGTTTCAGGTTTGAGATCCACCAGCACCCTCGCCTCC
TCCCTCTCCGCCTCGGACGACGGCTTTGTGGGCGTCCATGACGGCGAGCT
TTACACCGAGCCTTCCTCCCACAGCTCCATGTCTACGCTCCCTCCCGCAT
CCCTGTATGGCGGGGGAGGGGAGGATCCCGCAATAGGCCACCTTGTCCTC
ACCTTTTACGAGCGTCGCCAGACCCTTTCTTTCTTCCGGCTGATCCAGAA
CGAAGAGCGGGTCGTCTTTGAAGAGTGGATCATACCTTTCCTCGTGGACA
GCATGGGTACACTGCCGGCACCTTCGACTGTCCTACCCTAAGGTGGAGCG
TCCTACCTCCTCCTCCTCCTCGTCGTCCCCCTTCTCCGTTGCACGCATCG
ATGAGGTTGTGGACAGCGCCCTTGACGCATGCCTTCGAAATTTGACCCCG
GCAGGGCCCAATTTGAGCAGAGATGAACCACAAGGAGCATGTGTTGGGGG
AGCTAGAACTTCGCCCCCTTCATACCAAAGAGGCGTTACAATGTCTACTG
CATTCAATTATATTCCTACGTGCACCAAATATAGTGCGGCCACGCGAGCG
GTCGAACAGCAGCGGGCCCAAGCGCGCACGGAGGCCCTTCTCCGCTCTCG
CCTGCAGGATATATACACCCTCGTGAATGGAAGCATCGATCACATCCCTC
CAGTCAGTTATTTGTTTCAGGTTTGAGATCCACCAGCACCCTCGCCTCCT
CCCTCTCCGCCTCGGACGACGGCTTTGTGGGCGTCCATGACGGCGAGCTT
TACACCGAGCCTTCCTCCCACAGCTCCATGTCTACGCTCCCTCCCGCATC
CCTGTATGGCGGGGGAGGGGAGGATCCCGCAATAGGCCACCTTGTCCTCA
CCTTTTACGAGCGTCGCCAGACCCTTTCTTTCTTCCGGCTGATCCAGAAC
GAAGAGCGGGTCGTCTTTGAAGAGTGGATCATACCTTTCCTCGTGGACAG
CATGGGTACACTGCCGGCACCTTCGACTGTCCTACCCTAAGGTGGAGCGT
CCTACCTCCTCCTCCTCCTCGTCGTCCCCCTTCTCCGTTGCACGCATCGA
TGAGGTTGTGGACAGCGCCCTTGACGCATGCCTTCGAAATTTGACCCCGG
CAGGGCCCAATTTGAGCAGAGATGAACCACAAGGAGCATGTGTTGGGGGA
GCTAGAACTTCGCCCCCTTCATACCAAAGAGGCGTTACAATGTCTACTGC
ATTCAATTATATTCCTACGTGCACCAAATATAGTGCGGCCACGCGAGCGG
TCGAACAGCAGCGGGCCCAAGCGCGCACGGAGGCCCTTCTCCGCTCTCGC
CTGCAGGATATATACACCCTCGTGAATGGAAGCATCGATCACATCCCTCC
AGTCAGTTATTTGTTTCAGGTTTGAGATCCACCAGCACCCTCGCCTCCTC
CCTCTCCGCCTCGGACGACGGCTTTGTGGGCGTCCATGACGGCGAGCTTT
ACACCGAGCCTTCCTCCCACAGCTCCATGTCTACGCTCCCTCCCGCATCC
CTGTATGGCGGGGGAGGGGAGGATCCCGCAATAGGCCACCTTGTCCTCAC
CTTTTACGAGCGTCGCCAGACCCTTTCTTTCTTCCGGCTGATCCAGAACG
AAGAGCGGGTCGTCTTTGAAGAGTGGATCATACCTTTCCTCGTGGACAGC
ATGGGTACACTGCCGGCACCTTCGACTGTCCTACCCTAAGGTGGAGCGTC
CTACCTCCTCCTCCTCCTCGTCGTCCCCCTTCTCCGTTGCACGCATCGAT
GAGGTTGTGGACAGCGCCCTTGACGCATGCCTTCGAAATTTGACCCCGGC
AGGGCCCAATTTGAGCAGAGATGAACCACAAGGAGCATGTGTTGGGGGAG
CTAGAACTTCGCCCCCTTCATACCAAAGAGGCGTTACAATGTCTACTGCA
TTCAATTATATTCCTACGTGCACCAAATATAGTGCGGCCACGCGAGCGGT
CGAACAGCAGCGGGCCCAAGCGCGCACGGAGGCCCTTCTCCGCTCTCGCC
TGCAGGATATATACACCCTCGTGAATGGAAGCATCGATCACATCCCTCCA
GTCAGTTATTTGTTTCAGGTTTGAGATCCACCAGCACCCTCGCCTCCTCC
CTCTCCGCCTCGGACGACGGCTTTGTGGGCGTCCATGACGGCGAGCTTTA
CACCGAGCCTTCCTCCCACAGCTCCATGTCTACGCTCCCTCCCGCATCCC
TGTATGGCGGGGGAGGGGAGGATCCCGCAATAGGCCACCTTGTCCTCACC
TTTTACGAGCGTCGCCAGACCCTTTCTTTCTTCCGGCTGATCCAGAACGA
AGAGCGGGTCGTCTTTGAAGAGTGGATCATACCTTTCCTCGTGGACAGCA
TGGGTACACTGCCGGCACCTTCGACTGTCCTACCCTAAGGTGGAGCGTCC
TACCTCCTCCTCCTCCTCGTCGTCCCCCTTCTCCGTTGCACGCATCGATG
AGGTTGTGGACAGCGCCCTTGACGCATGCCTTCGAAATTTGACCCCGGCA
GGGCCCAATTTGAGCAGAGATGAACCACAAGGAGCATGTGTTGGGGGAGC
TAGAACTTCGCCCCCTTCATACCAAAGAGGCGTTACAATGTCTACTGCAT
TCAATTATATTCCTACGTGCACCAAATATAGTGCGGCCACGCGAG back to top
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