EWM26024.1, cds4644 (CDS) Nannochloropsis gaditana

Overview
NameEWM26024.1
Unique Namecds4644
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:1157306..1157758 +

Link to JBrowse

Properties
Property NameValue
Start range1157306
Start range.
Protein idEWM26024.1
Productuncharacterized protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100629g1.2828.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1157306..1157758 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26024.1 vs. NCBI_GenBank
Match: gi|585107941|gb|EWM26024.1| (uncharacterized protein Naga_100629g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 304.679 bits (779), Expect = 7.728e-105
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
Query:    1 PPSLPSSLPRQGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLRDTPHLISGVPEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSAVVGRTHCREEGGGKDNTGKLGREGMGTQGLGSDRHGQVSFQFGFFSDVG 150
            PPSLPSSLPRQGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLRDTPHLISGVPEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSAVVGRTHCREEGGGKDNTGKLGREGMGTQGLGSDRHGQVSFQFGFFSDVG
Sbjct:    1 PPSLPSSLPRQGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLRDTPHLISGVPEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSAVVGRTHCREEGGGKDNTGKLGREGMGTQGLGSDRHGQVSFQFGFFSDVG 150          
BLAST of EWM26024.1 vs. NCBI_GenBank
Match: gi|553176994|ref|XP_005852424.1| (hypothetical protein NGA_0694400 [Nannochloropsis gaditana CCMP526] >gi|422296109|gb|EKU23408.1| hypothetical protein NGA_0694400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 281.952 bits (720), Expect = 2.237e-95
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 0
Query:    8 LPRQGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLRDTPHLISGVPEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSAVVGRTHCREEGGGKDNTGKLGREGMGTQGLGSDRHGQVSFQFGFFSDVG 150
            +PR GWWHLVVNLEESLAITQNYVSLSNLPHVLSFLRDTPHLISGVPEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSAVVGRTHCREEGGGKD+TGKLGREGMGTQGLGSDRHGQVSFQFGFFSDVG
Sbjct:   43 VPR-GWWHLVVNLEESLAITQNYVSLSNLPHVLSFLRDTPHLISGVPEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSAVVGRTHCREEGGGKDSTGKLGREGMGTQGLGSDRHGQVSFQFGFFSDVG 184          
BLAST of EWM26024.1 vs. NCBI_GenBank
Match: gi|673043693|ref|XP_008875807.1| (hypothetical protein H310_11044 [Aphanomyces invadans] >gi|574468596|gb|ETV95614.1| hypothetical protein H310_11044 [Aphanomyces invadans])

HSP 1 Score: 93.2041 bits (230), Expect = 2.342e-19
Identity = 55/139 (39.57%), Postives = 75/139 (53.96%), Query Frame = 0
Query:    8 LPRQGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLRDTPHLISGV-PEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSAVVGRTHCREEGGGKDNTGKLGREGMGTQGLGSDRHGQVSFQFGF 145
            +PR GWWH+V+NL+ESLAITQNYVS SN+ HVL+FL D P  +SG+  E +RPLLYA+FR AL + +P+ +   +   R          +  W+++V  T   E+G                       HG   F FGF
Sbjct:  394 VPR-GWWHIVLNLDESLAITQNYVSPSNVQHVLAFLHDKPDQVSGLDDETKRPLLYAKFRAALEKHHPEFVATFDESRR-----PTHPKKATWASLVQSTVPAEDGNA---------------------HGAAPFSFGF 505          
BLAST of EWM26024.1 vs. NCBI_GenBank
Match: gi|1173943094|gb|OQR91992.1| (histone arginine demethylase [Thraustotheca clavata])

HSP 1 Score: 90.1225 bits (222), Expect = 3.747e-18
Identity = 39/69 (56.52%), Postives = 53/69 (76.81%), Query Frame = 0
Query:   11 QGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLRDTPHLISGVPEAERPLLYARFREALRESYPQVLQE 79
            +GWWHLV+N+EE LAITQN+V  S+L   LSFL D P  +SGVPE ERP LY +FR+ L++ +P+++ E
Sbjct:  367 KGWWHLVLNIEECLAITQNFVCKSSLMDTLSFLTDKPDQVSGVPEEERPKLYNKFRKVLQDKHPELVNE 435          
BLAST of EWM26024.1 vs. NCBI_GenBank
Match: gi|698792164|ref|XP_009829114.1| (hypothetical protein H257_05819 [Aphanomyces astaci] >gi|574115771|gb|ETV81256.1| hypothetical protein H257_05819 [Aphanomyces astaci])

HSP 1 Score: 88.9669 bits (219), Expect = 8.890e-18
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 0
Query:    8 LPRQGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLRDTPHLISGV-PEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSAVVGRTHCREEGGG 114
            +PR GWWH+V+NL+ESLAITQNYVS SN+  VL FL D P  +SG+  E +RPLLYA+FR AL   +P+++   +   R++    +      W+++V  +   E+G  
Sbjct:  396 VPR-GWWHIVLNLDESLAITQNYVSPSNVQQVLEFLHDKPDQVSGLDDETKRPLLYAKFRAALELHHPEIVATFDESRRQKPKKSK------WASLVIGSTTDEDGAS 496          
BLAST of EWM26024.1 vs. NCBI_GenBank
Match: gi|1173948050|gb|OQR96208.1| (histone arginine demethylase [Achlya hypogyna])

HSP 1 Score: 84.3445 bits (207), Expect = 2.694e-16
Identity = 37/69 (53.62%), Postives = 52/69 (75.36%), Query Frame = 0
Query:   11 QGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLRDTPHLISGVPEAERPLLYARFREALRESYPQVLQE 79
            +GWWHLV+N EE LAITQN+V  S+L   L+FL+D P  +SGV E +RPLLY +FR+ L++++P  + E
Sbjct:  380 KGWWHLVLNTEECLAITQNFVCGSSLMDTLAFLKDKPDQVSGVDEDQRPLLYGKFRKVLQDAHPDRVAE 448          
BLAST of EWM26024.1 vs. NCBI_GenBank
Match: gi|685379052|ref|XP_009122265.1| (PREDICTED: F-box protein At5g06550 [Brassica rapa])

HSP 1 Score: 83.1889 bits (204), Expect = 8.511e-16
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 0
Query:   11 QGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLR--DTPHLISGVPEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSA 101
             GWWHLV+NLEES+AITQNYVS  NL +VL FL+  +   L+SG  + E   L+ +F EA+ E+YP  +QE E K  E+  AE E+    W A
Sbjct:  410 NGWWHLVINLEESIAITQNYVSRRNLLNVLEFLKKPNAKELVSGTNDREN--LHDKFNEAIEEAYPGTIQELEKKAEEKRIAE-EQKVTFWDA 499          
BLAST of EWM26024.1 vs. NCBI_GenBank
Match: gi|674963860|emb|CDX70092.1| (BnaA10g24410D [Brassica napus])

HSP 1 Score: 82.8037 bits (203), Expect = 1.221e-15
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0
Query:   11 QGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLR--DTPHLISGVPEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSA 101
             GWWHLV+NLEES+AITQNYVS  NL +VL FL+  +   L+SG  + E   L+ +F++A+ E+YP  +QE E K  E+  AE E+    W A
Sbjct:  387 NGWWHLVINLEESIAITQNYVSRRNLLNVLEFLKKPNAKELVSGTNDREN--LHDKFKKAIEEAYPGTIQELEKKAEEKRIAE-EQKVTFWDA 476          
BLAST of EWM26024.1 vs. NCBI_GenBank
Match: gi|1072991943|ref|XP_018446739.1| (PREDICTED: F-box protein At5g06550 [Raphanus sativus])

HSP 1 Score: 82.8037 bits (203), Expect = 1.250e-15
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0
Query:   11 QGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLR--DTPHLISGVPEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSA 101
             GWWHLV+NLEES+AITQNYVS  NL +VL FL+  +   L+SG  + E   L+ +F++A+ E+YP  +QE E K  E+  AE E+    W A
Sbjct:  406 NGWWHLVINLEESIAITQNYVSRRNLLNVLEFLKKPNAKELVSGTNDREN--LHDKFKKAIEEAYPGTIQELEKKAEEKRRAE-EQKVTFWDA 495          
BLAST of EWM26024.1 vs. NCBI_GenBank
Match: gi|923888558|ref|XP_013715519.1| (PREDICTED: F-box protein At5g06550-like [Brassica napus])

HSP 1 Score: 82.8037 bits (203), Expect = 1.295e-15
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0
Query:   11 QGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLR--DTPHLISGVPEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWSA 101
             GWWHLV+NLEES+AITQNYVS  NL +VL FL+  +   L+SG  + E   L+ +F++A+ E+YP  +QE E K  E+  AE E+    W A
Sbjct:  403 NGWWHLVINLEESIAITQNYVSRRNLLNVLEFLKKPNAKELVSGTNDREN--LHDKFKKAIEEAYPGTIQELEKKAEEKRIAE-EQKVTFWDA 492          
The following BLAST results are available for this feature:
BLAST of EWM26024.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107941|gb|EWM26024.1|7.728e-105100.00uncharacterized protein Naga_100629g1, partial [Na... [more]
gi|553176994|ref|XP_005852424.1|2.237e-9597.90hypothetical protein NGA_0694400 [Nannochloropsis ... [more]
gi|673043693|ref|XP_008875807.1|2.342e-1939.57hypothetical protein H310_11044 [Aphanomyces invad... [more]
gi|1173943094|gb|OQR91992.1|3.747e-1856.52histone arginine demethylase [Thraustotheca clavat... [more]
gi|698792164|ref|XP_009829114.1|8.890e-1843.52hypothetical protein H257_05819 [Aphanomyces astac... [more]
gi|1173948050|gb|OQR96208.1|2.694e-1653.62histone arginine demethylase [Achlya hypogyna][more]
gi|685379052|ref|XP_009122265.1|8.511e-1649.46PREDICTED: F-box protein At5g06550 [Brassica rapa][more]
gi|674963860|emb|CDX70092.1|1.221e-1548.39BnaA10g24410D [Brassica napus][more]
gi|1072991943|ref|XP_018446739.1|1.250e-1548.39PREDICTED: F-box protein At5g06550 [Raphanus sativ... [more]
gi|923888558|ref|XP_013715519.1|1.295e-1548.39PREDICTED: F-box protein At5g06550-like [Brassica ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4656rna4656Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications