rna4656, rna4656 (mRNA) Nannochloropsis gaditana

Overview
Namerna4656
Unique Namerna4656
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length697
Alignment locationCM002463.1:1157306..1157758 +

Link to JBrowse

Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100629g1.2828.mrna
Orig protein idgnl|cribi|Naga_100629g1.2828
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1157306..1157758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100629g1gene4493Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4656rna4656-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26024.1cds4644Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4656 ID=rna4656|Name=rna4656|organism=Nannochloropsis gaditana|type=mRNA|length=697bp
CCCTCCCTCCCTCCCTTGAAGTCCCGAAGGAAGCCCCCTTCATGGACGAA
TCCTCGAGATTCTCTTCTTCCCTCCCCTTCCTGTCCTCAAGTCCCCAAAG
GAAATGAAATGAAATCAAATCAAATCAAATCAAATCTTCTTCTCTTCTCC
TCCTCCTTCTTCTCCTTCAATTTCACCCGGAGCCGAACCCTCTTCCCCTC
CTCCCACCAGGATCCCAACTCGACGGCCGCCTGGAATGCAGTCGTAAAGG
GGCGGAAGAAGTGGATTCTTTTCCCCCCCCATCTGGTTCCTCCCGGGGTC
CACCCGTCTGCGGACGGTAGGAAGGGAGGGAGGGAGAGAGGGAGGGAGGG
AGGGAGGGAGAGAGGGAGAGAGGGAGGGAAAAGGGGGGAAAGGTAGCGTG
CGGAGGAAGAAAAGACGATTTGCAGTGTTGACGGCGAGTATACGGTTGGG
GGGGAGCATCAGGACGCCTGAGGCGCAGAGCGGCTCCTTTGTGATGAAAA
ATGGATAGTTGTTGGCTGATGTCCCCCGATTTTTCTGCTCTGGTTCAATT
GCCTCACCCAGGTCTGGATCTGGCCACGCCAGTGACTCTCACGGAGTGGG
TGGAGGGCTTCTACAAGCAGGCCGTGAAGGGAGAGGGGTGGAGGGAGGGC
GTGGTGGAGGCAGTGTGTGACGCGGGAGAGATCGTCTTCGTACCTCG
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protein sequence of rna4656

>rna4656-protein ID=rna4656-protein|Name=rna4656|organism=Nannochloropsis gaditana|type=polypeptide|length=150bp
PPSLPSSLPRQGWWHLVVNLEESLAITQNYVSLSNLPHVLSFLRDTPHLI
SGVPEAERPLLYARFREALRESYPQVLQEAEGKPRERAGAEREEGRQGWS
AVVGRTHCREEGGGKDNTGKLGREGMGTQGLGSDRHGQVSFQFGFFSDVG
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mRNA from alignment at CM002463.1:1157306..1157758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4656 ID=rna4656|Name=rna4656|organism=Nannochloropsis gaditana|type=mRNA|length=453bp|location=Sequence derived from alignment at CM002463.1:1157306..1157758+ (Nannochloropsis gaditana)
cctccctcccttccttcctccctccctcgccaaggCTGGTGGCACCTGGT
CGTGAACCTGGAGGAGAGCCTGGCCATTACTCAAAACTACGTCTCGTTGT
CCAACCTCCCGCATGTCTTGAGCTTCCTAAGAGACACCCCCCATTTGATC
AGCGGGGTCCCGGAAGCCGAGCGGCCCTTGTTGTATGCACGCTTCAGAGA
GGCCTTGCGGGAATCCTATCCGCAGGTCCTCcaggaggcagaagggaaGC
CaagggagcgggcgggggcggagagggaggaagggaggcagggatggaGT
GCGGTGGTGGGGCGGACGCATtgtcgggaggaaggaggggggaaagataa
CACGGGCAAGCTGGGgcgagaggggatggggactCAGGGGCTTGGGAGCG
ATAGGCACGGGCAAGTCTCTTTCCAATTCGGATTTTTCTCGGACGTAGGC
TAG
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Coding sequence (CDS) from alignment at CM002463.1:1157306..1157758+

>rna4656 ID=rna4656|Name=rna4656|organism=Nannochloropsis gaditana|type=CDS|length=453bp|location=Sequence derived from alignment at CM002463.1:1157306..1157758+ (Nannochloropsis gaditana)
cctccctcccttccttcctccctccctcgccaaggCTGGTGGCACCTGGT
CGTGAACCTGGAGGAGAGCCTGGCCATTACTCAAAACTACGTCTCGTTGT
CCAACCTCCCGCATGTCTTGAGCTTCCTAAGAGACACCCCCCATTTGATC
AGCGGGGTCCCGGAAGCCGAGCGGCCCTTGTTGTATGCACGCTTCAGAGA
GGCCTTGCGGGAATCCTATCCGCAGGTCCTCcaggaggcagaagggaaGC
CaagggagcgggcgggggcggagagggaggaagggaggcagggatggaGT
GCGGTGGTGGGGCGGACGCATtgtcgggaggaaggaggggggaaagataa
CACGGGCAAGCTGGGgcgagaggggatggggactCAGGGGCTTGGGAGCG
ATAGGCACGGGCAAGTCTCTTTCCAATTCGGATTTTTCTCGGACGTAGGC
TAG
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Synonyms
Publications