rna4638, rna4638 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4638
Unique Name	rna4638
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	510
Alignment location	CM002463.1:1113417..1114042 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102764g1.5699.mrna
Orig protein id	gnl\|cribi\|Naga_102764g1.5699
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:1113417..1114042 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102764g1	gene4474	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4638	rna4638-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26047.1	cds4626	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:1113417..1114042-
coding sequence from alignment at CM002463.1:1113417..1114042-

mRNA sequence

>rna4638 ID=rna4638|Name=rna4638|organism=Nannochloropsis gaditana|type=mRNA|length=510bp
ATGCCACTTGCCCCAGGTATCGACCGTCTAAAAGTATTGCTTTGTTTAAG
TCTTCCGACAACTCCTTACAGGCACGGACTCGCTTGCTCTTTTGCTACAC
GATTTGTGACGAGTTTTTCATCCCATTCCTCCTTCGACGTGGACGTTTTG
GTATGCGGCGCTGAAGTTGTAGGACTGTCCATCGCCCGGGCATTGGCGAG
ATTCATAAAACCTTTCCCTCTGAACATATCGCATGATCCGTCATGCCTAG
GGCGGGACGGGAGGTCCTGGTGGTGGAGGCAGAGAAAAGCCCTGGGGGCT
CAGCCTTCGATGCGGTACAGTGAGCACATTTCATTTGTTCCTTCCATTCG
CGTCTCTGTTATGGCATTTTTCTGGACGTGTCTAGGAATGTACGACCCCC
CGAGGCTTCCTGAAAGCCGCCCCTCTGTGTACGAGGTCGACGCCCCCTGC
CTGCCTGTTGTGATGAATATGGAGGGCCCTACCACAGGTAGGACGGAGGG
AGGGAGGTAG

protein sequence of rna4638

>rna4638-protein ID=rna4638-protein|Name=rna4638|organism=Nannochloropsis gaditana|type=polypeptide|length=90bp
MWRQVIDDPAAYLESSEPPSFFIQEKIQGKHLIFPPSHRLSRLVSAGMKE
QPQVKVWQLSTADYELEILAHYQEGTLSLGILIPLLPPIA

mRNA from alignment at CM002463.1:1113417..1114042-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4638 ID=rna4638|Name=rna4638|organism=Nannochloropsis gaditana|type=mRNA|length=626bp|location=Sequence derived from alignment at CM002463.1:1113417..1114042- (Nannochloropsis gaditana)
ATGTGGAGGCAAGTGATTGACGACCCAGCGGCTTATTTAGAGTCCTCAGA
GCCTCCCTCCTTCTTCATTCAGGAGAAGGTAGGGAGGAAGGGAGGGGAGG
TGGGAGGGAGGGAGGGAGGGAGGGAGGAGGCAATACTTAAGAGGACGGGC
AGATCGGCCTAGGACTCAGAATAGCTCTTCTGGTTCCTTCCTCCTCCCTC
CCTCCTTCCTTCCCTCCCCCCTACCCTCCCTCTCTCCCTCCCTTCCCAGA
TCCAAGGGAAGCACCTCATATTCCCTCCCTCCCACCGTCTCTCTCGCTTG
GTTTCGGCGGGAATGAAGGAGCAGCCGCAGGTTAAGGTGTGGCAGCTGTC
GACGGCAGATTACGAGTTGGAAATCCTCGCACATTATCAGGTAGGGAGGG
AAGGGGGAATGGGAGAGAGGGAGGGAGGGAGGGGCGGAGCGAGAGGCGTT
TCATCTTTCAACATTCACCATCCTTCTGCCGCAAAAGGAATTAACATTTC
ACCCCAACCCCTCCCTCCCTCCCTCCCTCCCTTCCTCGCTCGGCTTCTTC
TTTCGCGCCATTTCTGTCTCTCAGGAGGGAACGTTATCCCTTGGAATACT
CATCCCTCTTCTCCCTCCCATTGCCC

Coding sequence (CDS) from alignment at CM002463.1:1113417..1114042-

>rna4638 ID=rna4638|Name=rna4638|organism=Nannochloropsis gaditana|type=CDS|length=813bp|location=Sequence derived from alignment at CM002463.1:1113417..1114042- (Nannochloropsis gaditana)
GAGGGAACGTTATCCCTTGGAATACTCATCCCTCTTCTCCCTCCCATTGC
CCATCCAAGGGAAGCACCTCATATTCCCTCCCTCCCACCGTCTCTCTCGC
TTGGTTTCGGCGGGAATGAAGGAGCAGCCGCAGGTTAAGGTGTGGCAGCT
GTCGACGGCAGATTACGAGTTGGAAATCCTCGCACATTATCAGATGTGGA
GGCAAGTGATTGACGACCCAGCGGCTTATTTAGAGTCCTCAGAGCCTCCC
TCCTTCTTCATTCAGGAGAAGGAGGGAACGTTATCCCTTGGAATACTCAT
CCCTCTTCTCCCTCCCATTGCCCATCCAAGGGAAGCACCTCATATTCCCT
CCCTCCCACCGTCTCTCTCGCTTGGTTTCGGCGGGAATGAAGGAGCAGCC
GCAGGTTAAGGTGTGGCAGCTGTCGACGGCAGATTACGAGTTGGAAATCC
TCGCACATTATCAGATGTGGAGGCAAGTGATTGACGACCCAGCGGCTTAT
TTAGAGTCCTCAGAGCCTCCCTCCTTCTTCATTCAGGAGAAGGAGGGAAC
GTTATCCCTTGGAATACTCATCCCTCTTCTCCCTCCCATTGCCCATCCAA
GGGAAGCACCTCATATTCCCTCCCTCCCACCGTCTCTCTCGCTTGGTTTC
GGCGGGAATGAAGGAGCAGCCGCAGGTTAAGGTGTGGCAGCTGTCGACGG
CAGATTACGAGTTGGAAATCCTCGCACATTATCAGATGTGGAGGCAAGTG
ATTGACGACCCAGCGGCTTATTTAGAGTCCTCAGAGCCTCCCTCCTTCTT
CATTCAGGAGAAG

Synonyms

Publications