rna4593, rna4593 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4593
Unique Name	rna4593
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2022
Alignment location	CM002463.1:989758..991252 -

Link to JBrowse

Properties


Property Name	Value
Product	protoheme ix farnesyltransferase
Orig transcript id	gnl\|cribi\|Naga_100014g71.9316.mrna
Orig protein id	gnl\|cribi\|Naga_100014g71.9316
Gene	COX10
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:989758..991252 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
COX10	gene4431	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4593	rna4593-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26139.1	cds4581	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:989758..991252-
coding sequence from alignment at CM002463.1:989758..991252-

mRNA sequence

>rna4593 ID=rna4593|Name=rna4593|organism=Nannochloropsis gaditana|type=mRNA|length=2022bp
ATGCAGACGGTCATGGAAGCTTCACCGATGAATGTCTCGCCGCCAGGTGG
ACAAGCCCCTGAGCCTTTCCCGCGGCCGGCCTCCGCGGATGGAGACGAGG
CGCCTGCGAATGGAGTAGACGGGGGAACCATGGAGGTGGGAGGCGGCGAG
GAGGGAGGAGGGAAAGGAAGGGGAGGTGAGGATTTCTTCCAGATCGCCGC
ACTGATCGAGCAGTTGCGGCACAACGACTTGGATTACCGCGTGAACGCAA
CCAAGCACTTGTGTACCATCAGCCGGGCACTGGGGGAAGAGCGGACGCGA
GAGGAGCTGATCCCCTTCATCATGGACTCCACCGACGACGAGGACGAAGT
CTTGCTGGCCATGGCCGAGGCCCTGGGCGACCTGGTCGACTGCCTGGGGG
GCCCCGAGCACGTGCACCAGCTGCTCGTGCCGCTGGAGGCGCTGACGGCC
TGCGAGGAGGGCGTGGTCCGGGAGCGGGCGGTAGAGAGTATCCTGAAGGT
GGGCACAGCCATGAGCAGGGAGGCGAAGGGGGACCACCTGCTGCCCTTCC
TGCGCCGGCTGGCGGACCGGGACTGGTTCACGACGCGGATGTCGGCGACA
GCCCTCTTCGAGCACGTGTACAGCGATCTCCCCGCAGACACTCAACAGGA
GCTGATCGAGCTCTACGAGCGATTGTGCAAGGACGACACCCCCATGGTCC
GCCGCGTCGCCGCCCTGCACCTCGCTTCCTTTGTCCGCTCAATTCCGTGC
CCTCCGCCCTCTCCCGCCGCCTCCCCCGCCTCCCCTCCCGCCTGCTCCCA
CCCTCTTCTCCCCTCTTTCCGCTCCCTCGCCGCCGACGACCACGATAACG
TGCGCCTGCAGACCGTCGCCAACTGCGTGGCCCTCGCTCAAGCCCTGCCC
GCCGAAGCCCGTCTTCAAGAGGTGCTGCCCATCACCCTGGCTGCGGCAGC
GGACCGTGCTTGGCGCGTGCGCTGGAGCGTGGCCTCTAAATTCGAGGATG
TCTGCCAAGCCTTCGGACCGGAGGTCACGGCCTCCTCCATCTGCTCCTCC
TTCGAGCGCCTGTTACAGGATCCAGAGGCGGAGGTGCGCACCGCTGCCGC
CGCCAACACCCCTGCTGTGGCGCAGCACCTGCCTCCCGCCCTGGTCGTGA
GCGCCTTGGTCCCGTGTCTGAAGCAGCTTGTGGTGGACGGCAGCGAGCAT
GTGCGGGCTGCTTTGGCGACCGGGATTAACGATTTCGCCCCCCTCCTGGG
GAAGGAGGATACCATTGCGCACCTGCTCCCTCTCCTCCTTCAGCTCCTCC
GTGACGCGTCCTCGGAGGTCCGTCTTAATATCATAGCCAAGCTTCAGTCG
CTCAACGACGTTATTGGCGTCGAGTTGCTCTCTCAGTCCTTGCTCCCAGC
CATCGTCGACCTAGCGGAGGACAACAAATGGCGGGTGCGCCTCGCTATCA
TAGAGCACATCCCTGCTTTGGCGCAGCAGCTTGGACCTGCCTTTTTTAAT
GAAAAGCTGAACGGTCTGTGCATGATGTGGCTCTCTGATGGAATCCACTC
CATTCGCCTCGCAGCCACCCAGAATCTGAAGCGGCTCACGGACCTCTTTG
GTCAGGAGTGGGCTCAAGCGCACATCCTTCCCAGGGTGCGCAGCATGCAG
TCGCATCCCTCCCACCTTCAGCGGATGACGGCCCTGTACGCAATCCAGGT
CCTATCCGAATCGCTCAGCGAAGACGTGCTTGTCTCTGAGGCCCTTCCAC
TCGCCTTGCACCTTAACAAGGATCCTGTCCCCAACATTCGTTTCACTCTC
GCAAAAACTCTGGAGACGCTTGCTCCAAAAGTCGTGGAAAGAGAAGGGGC
TGTGTTGCCTTCTCAGGTTCGTCCCTGCCTGGAAGAGTTGCTCAATGACT
CTGATCGAGATGTGAGCCAGGCATTAGGGGACGGCAGGACTCGAGACAAG
ACACCCTGGATCTGGGGGAACACACGAAGGATAAGTGTGGACAGCTTTCT
GGAGAGATTTTTTGACACATAA

protein sequence of rna4593

>rna4593-protein ID=rna4593-protein|Name=rna4593|organism=Nannochloropsis gaditana|type=polypeptide|length=436bp
MGCLLPLSSSYSSSKAVALVAGHQGRGPVVPRIAKVSSIRQIAGLCAELG
KARLSALVVLTTSSGFLAAGGPVAWLPFTAVSVGTMLAACSANTFNQLLE
TDNDKRMKRTHLRPLPSGRASRPFALAWAVGSAGASAAVLTAGTNPLTTA
LGMGNLALYALPYTLSKTRSEANTWIGALVGAVPPLMGWAAATDCASLTS
LLSSPDAVLLASILFLWQFPHFFALSWVHRKDYARGGFQMVPCADSGGRR
TADLIWRYSLCLAPLPVLATGLGVTGSMFALEGSALNLYLMYLARRFKSE
RTDERARAVFRCSLWYLPVLLGGFVFHSRQWDSERVTETVGNSGERNNLS
VERWVSGARKQLAKVCVHEMMLQEGKVEQGGGRERREGGLLCPPVVAGHV
VEETKEVVEKVKGEAEASAMRMPLSLRMGDGGVRRE

mRNA from alignment at CM002463.1:989758..991252-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4593 ID=rna4593|Name=rna4593|organism=Nannochloropsis gaditana|type=mRNA|length=1495bp|location=Sequence derived from alignment at CM002463.1:989758..991252- (Nannochloropsis gaditana)
ATGGGATGTCTCCTCCCTCTTTCTTCCTCCTACTCATCCTCCAAAGCTGT
CGCTCTCGTCGCAGGACATCAGGGACGCGGCCCCGTCGTACCGAGGATCG
CGAAGGTCTCTAGCATCAGGCAGATAGCGGGCTTGTGCGCCGAACTGGGT
AAAGCACGACTAAGGTGCGTCGGACAGCTAATGTTCGTGCCAAAGAGTAG
GAGGCTCGTGTATAAACGTGGCGAGAGAATCTTATGATCAGGATCCATTA
AATTTGAGCGGCGAGGCCTTCGAGACGGCACCGCCGGTGTTCGAGGCTCG
CCTCTTCTCACACCGATGCTTCCTTAACCCCTCCACCACTCCCCGCAGCG
CGCTGGTGGTCCTGACTACATCCTCCGGTTTCCTCGCAGCTGGAGGCCCT
GTGGCCTGGCTGCCCTTCACCGCTGTCTCGGTCGGTACCATGCTGGCCGC
GTGCTCGGCCAACACCTTTAACCAGCTCCTGGAGACCGACAACGACAAGC
GCATGAAACGGACACACCTCCGACCCCTTCCTTCCGGGCGAGCGTCGCGC
CCCTTTGCCTTGGCCTGGGCCGTCGGCAGTGCGGGGGCTTCTGCCGCCGT
CCTGACCGCGGGAACGAACCCCCTCACCACCGCCTTAGGCATGGGGAACC
TGGCGCTCTACGCGTTGCCCTACACGCTGAGCAAGACCAGGAGCGAGGCC
AACACGTGGATAGGCGCCTTGGTCGGGGCCGTACCGCCGTTGATGGGGTG
GGCCGCAGCCACAGATTGCGCCTCCCTCACCAGTCTCCTCTCCTCCCCCG
ACGCGGTGCTCTTGGCGAGCATCCTCTTCCTCTGGCAGTTTCCCCATTTC
TTCGCTCTTTCCTGGGTGCATCGTAAGGACTATGCCCGCGGGGGCTTTCA
GATGGTGCCCTGTGCAGACTCTGGAGGGCGGCGGACGGCGGACCTGATAT
GGCGATACTCCCTCTGCCTTGCGCCGTTGCCGGTGCTGGCCACGGGCCTG
GGGGTGACTGGGAGCATGTTTGCTCTGGAGGGTTCAGCGCTCAACCTGTA
CTTGATGTACCTAGCTCGAAGATTCAAAAGCGAAAGAACGGACGAAAGAG
CTCGCGCCGTCTTTAGGTGCTCACTATGGTATCTGCCGGTGCTTCTGGGG
GGATTCGTTTTCCACAGCAGGCAATGGGACAGCGAGCGGGTGACAGAGAC
CGTCGGGAATTCCGGAGAGAGAAACAATTTGAGCGTGGAGCGTTGGGTAT
CAGGAGCGAGGAAGCAGCTAGCGAAAGTTTGCGTACACGAGATGATGTTG
CAGGAGGGGAAAGTCGAGCAAGGGGGCGGGCGGGAGCGAAGGGAGGGAGG
TTTACTATGCCCACCGGTAGTGGCGGGACATGTGGTAGAAGAGACCAAGG
AAGTCGTGGAAAAGGTAAAGGGAGAGGCAGAAGCGAGCGCGATGCGGATG
CCGCTCTCATTGCGGATGGGTGATGGTGGAGTCAGGAGGGAGTGA

Coding sequence (CDS) from alignment at CM002463.1:989758..991252-

>rna4593 ID=rna4593|Name=rna4593|organism=Nannochloropsis gaditana|type=CDS|length=2622bp|location=Sequence derived from alignment at CM002463.1:989758..991252- (Nannochloropsis gaditana)
CGCGCTGGTGGTCCTGACTACATCCTCCGGTTTCCTCGCAGCTGGAGGCC
CTGTGGCCTGGCTGCCCTTCACCGCTGTCTCGGTCGGTACCATGCTGGCC
GCGTGCTCGGCCAACACCTTTAACCAGCTCCTGGAGACCGACAACGACAA
GCGCATGAAACGGACACACCTCCGACCCCTTCCTTCCGGGCGAGCGTCGC
GCCCCTTTGCCTTGGCCTGGGCCGTCGGCAGTGCGGGGGCTTCTGCCGCC
GTCCTGACCGCGGGAACGAACCCCCTCACCACCGCCTTAGGCATGGGGAA
CCTGGCGCTCTACGCGTTGCCCTACACGCTGAGCAAGACCAGGAGCGAGG
CCAACACGTGGATAGGCGCCTTGGTCGGGGCCGTACCGCCGTTGATGGGG
TGGGCCGCAGCCACAGATTGCGCCTCCCTCACCAGTCTCCTCTCCTCCCC
CGACGCGGTGCTCTTGGCGAGCATCCTCTTCCTCTGGCAGTTTCCCCATT
TCTTCGCTCTTTCCTGGGTGCATCGTAAGGACTATGCCCGCGGGGGCTTT
CAGATGGTGCCCTGTGCAGACTCTGGAGGGCGGCGGACGGCGGACCTGAT
ATGGCGATACTCCCTCTGCCTTGCGCCGTTGCCGGTGCTGGCCACGGGCC
TGGGGGTGACTGGGAGCATGTTTGCTCTGGAGGGTTCAGCGCTCAACCTG
TACTTGATGTACCTAGCTCGAAGATTCAAAAGCGAAAGAACGGACGAAAG
AGCTCGCGCCGTCTTTAGGTGCTCACTATGGTATCTGCCGGTGCTTCTGG
GGGGATTCGTTTTCCACAGCAGGCAATGGGACAGCGAGCGGGTGACAGAG
ACCGTCGGGAATTCCGGAGAGAGAAACAATTTGAGCGTGGAGCGTTGGGT
ATCAGGAGCGAGGAAGCAGCTAGCGAAAGTTTGCGTACACGAGATGATGT
TGCAGGAGGGGAAAGTCGAGCAAGGGGGCGGGCGGGAGCGAAGGGAGGGA
GGTTTACTATGCCCACCGGTAGTGGCGGGACATGTGGTAGAAGAGACCAA
GGAAGTCGTGGAAAAGGTAAAGGGAGAGGCAGAAGCGAGCGCGATGCGGA
TGCCGCTCTCATTGCGGATGGGTGATGGTGGAGTCAGGAGGGAGTGAATG
GGATGTCTCCTCCCTCTTTCTTCCTCCTACTCATCCTCCAAAGCTGTCGC
TCTCGTCGCAGGACATCAGGGACGCGGCCCCGTCGTACCGAGGATCGCGA
AGGTCTCTAGCATCAGGCAGATAGCGGGCTTGTGCGCCGAACTGGGTAAA
GCACGACTAAGCGCGCTGGTGGTCCTGACTACATCCTCCGGTTTCCTCGC
AGCTGGAGGCCCTGTGGCCTGGCTGCCCTTCACCGCTGTCTCGGTCGGTA
CCATGCTGGCCGCGTGCTCGGCCAACACCTTTAACCAGCTCCTGGAGACC
GACAACGACAAGCGCATGAAACGGACACACCTCCGACCCCTTCCTTCCGG
GCGAGCGTCGCGCCCCTTTGCCTTGGCCTGGGCCGTCGGCAGTGCGGGGG
CTTCTGCCGCCGTCCTGACCGCGGGAACGAACCCCCTCACCACCGCCTTA
GGCATGGGGAACCTGGCGCTCTACGCGTTGCCCTACACGCTGAGCAAGAC
CAGGAGCGAGGCCAACACGTGGATAGGCGCCTTGGTCGGGGCCGTACCGC
CGTTGATGGGGTGGGCCGCAGCCACAGATTGCGCCTCCCTCACCAGTCTC
CTCTCCTCCCCCGACGCGGTGCTCTTGGCGAGCATCCTCTTCCTCTGGCA
GTTTCCCCATTTCTTCGCTCTTTCCTGGGTGCATCGTAAGGACTATGCCC
GCGGGGGCTTTCAGATGGTGCCCTGTGCAGACTCTGGAGGGCGGCGGACG
GCGGACCTGATATGGCGATACTCCCTCTGCCTTGCGCCGTTGCCGGTGCT
GGCCACGGGCCTGGGGGTGACTGGGAGCATGTTTGCTCTGGAGGGTTCAG
CGCTCAACCTGTACTTGATGTACCTAGCTCGAAGATTCAAAAGCGAAAGA
ACGGACGAAAGAGCTCGCGCCGTCTTTAGGTGCTCACTATGGTATCTGCC
GGTGCTTCTGGGGGGATTCGTTTTCCACAGCAGGCAATGGGACAGCGAGC
GGGTGACAGAGACCGTCGGGAATTCCGGAGAGAGAAACAATTTGAGCGTG
GAGCGTTGGGTATCAGGAGCGAGGAAGCAGCTAGCGAAAGTTTGCGTACA
CGAGATGATGTTGCAGGAGGGGAAAGTCGAGCAAGGGGGCGGGCGGGAGC
GAAGGGAGGGAGGTTTACTATGCCCACCGGTAGTGGCGGGACATGTGGTA
GAAGAGACCAAGGAAGTCGTGGAAAAGGTAAAGGGAGAGGCAGAAGCGAG
CGCGATGCGGATGCCGCTCTCATTGCGGATGGGTGATGGTGGAGTCAGGA
GGGAGTGAATGGGATGTCTCCTCCCTCTTTCTTCCTCCTACTCATCCTCC
AAAGCTGTCGCTCTCGTCGCAGGACATCAGGGACGCGGCCCCGTCGTACC
GAGGATCGCGAAGGTCTCTAGCATCAGGCAGATAGCGGGCTTGTGCGCCG
AACTGGGTAAAGCACGACTAAG

Synonyms

Publications