EWM26129.1, cds4560 (CDS) Nannochloropsis gaditana

Overview
NameEWM26129.1
Unique Namecds4560
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:942573..943049 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26129.1
Productpeptidyl-prolyl cis-trans fkbp-type
Orig transcript idgnl|cribi|Naga_100014g50.9306.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:942573..943049 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR003591Leu-rich_rpt_typical-subtyp
Homology
BLAST of EWM26129.1 vs. NCBI_GenBank
Match: gi|585108123|gb|EWM26129.1| (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana])

HSP 1 Score: 310.071 bits (793), Expect = 1.119e-106
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
Query:    1 MNLPRTFLQTSQPLVAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDENLLADSSTGNIVVDDSKKQVRQFIRERTAVPSCKTTK 158
            MNLPRTFLQTSQPLVAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDENLLADSSTGNIVVDDSKKQVRQFIRERTAVPSCKTTK
Sbjct:    1 MNLPRTFLQTSQPLVAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDENLLADSSTGNIVVDDSKKQVRQFIRERTAVPSCKTTK 158          
BLAST of EWM26129.1 vs. NCBI_GenBank
Match: gi|635362032|emb|CCI49145.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 105.145 bits (261), Expect = 2.240e-26
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 0
Query:   15 VAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDENLLAD 126
            VA S  +A ++G   RELIL+ S+DL C NLMCE++G  C CRLA  L+  P L  L LSNN L  +P+ VF LQ LRYL++++N L  +P +V++L  LE L +  N L++
Sbjct:    5 VATSFRQAAKSGAATRELILNKSQDLVCKNLMCERIGGACACRLAHILTCVPKLTHLDLSNNELETIPDAVFSLQDLRYLNVADNKLSSVPHNVVKLKCLEHLDLSGNNLSE 116          
BLAST of EWM26129.1 vs. NCBI_GenBank
Match: gi|325186415|emb|CCA20920.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 105.145 bits (261), Expect = 2.823e-26
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 0
Query:   15 VAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDENLLADSST 129
            VA S  +  + G  +++LIL  S+DL C NLMCEK+G  C CRLA  L+  P L  L LSNN+L  +PE VF LQ L+YL+L+ N L  LP  V++L  LE L +  N L++ ++
Sbjct:    5 VATSFRDVAKNGATIKKLILKKSQDLVCKNLMCEKIGGACACRLAHILTCVPKLTHLDLSNNSLETIPEAVFGLQDLKYLNLAENKLSSLPQDVMKLQELEYLDLSGNDLSEVAS 119          
BLAST of EWM26129.1 vs. NCBI_GenBank
Match: gi|695409974|ref|XP_009525062.1| (hypothetical protein PHYSODRAFT_496570 [Phytophthora sojae] >gi|348682529|gb|EGZ22345.1| hypothetical protein PHYSODRAFT_496570 [Phytophthora sojae])

HSP 1 Score: 103.99 bits (258), Expect = 3.506e-25
Identity = 60/118 (50.85%), Postives = 71/118 (60.17%), Query Frame = 0
Query:    7 FLQTSQPLVAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDENLL 124
            F  +S  ++A SL +  R+G R+ EL LS S DL C  LMCE VG+ C CRLA  L + P L RL LS N L  LP+ VF LQ+L  LDL  N L  LPP V QL+ LE L V  N L
Sbjct:   19 FSDSSTCVLATSLRDIARSGARVEELELSKSGDLICRQLMCEHVGDACACRLALALERVPRLRRLDLSANQLRALPDAVFSLQNLATLDLQQNRLTTLPPEVQQLAQLEALDVSHNQL 136          
BLAST of EWM26129.1 vs. NCBI_GenBank
Match: gi|299116608|emb|CBN76235.1| (Hypothetical leucine rich repeat protein [Ectocarpus siliculosus])

HSP 1 Score: 103.605 bits (257), Expect = 5.603e-25
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 0
Query:   14 LVAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDENLL 124
            ++A+SL +A R G     L+L  SEDL C NLMC K+GE C+CRLA  LS+   L+ L ++ N+L VLPE VF+L +L +LD+S N L++LP  V  LSSL  L + +N L
Sbjct:    2 VIARSLKDAARLGSATTSLLLRRSEDLVCQNLMCAKIGEACVCRLAVHLSRLGKLKELDVAENDLGVLPEPVFELPALEHLDVSGNGLKDLPAGVAALSSLRTLRLSDNAL 112          
BLAST of EWM26129.1 vs. NCBI_GenBank
Match: gi|669147748|ref|XP_008609436.1| (hypothetical protein SDRG_05498 [Saprolegnia diclina VS20] >gi|530739032|gb|EQC37274.1| hypothetical protein SDRG_05498 [Saprolegnia diclina VS20])

HSP 1 Score: 97.4413 bits (241), Expect = 8.300e-23
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 0
Query:   14 LVAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVL-QLSSLEVLSVDEN 122
            ++AKSL +A      +R+L+L  SEDL C+NLMCE+VGE C+C+L+  L + P LE L +S NNL  LP  +F L+ L  L++S N L  LP  +L  L+SLE L V++N
Sbjct:    1 MIAKSLRDAATHTSAVRQLVLRKSEDLLCMNLMCERVGEACVCKLSVVLERLPQLEHLDVSRNNLKSLPPAIFSLRHLTSLNVSGNKLSSLPDGLLSNLASLEALYVEDN 110          
BLAST of EWM26129.1 vs. NCBI_GenBank
Match: gi|255083266|ref|XP_002504619.1| (predicted protein [Micromonas commoda] >gi|226519887|gb|ACO65877.1| predicted protein [Micromonas commoda])

HSP 1 Score: 96.2857 bits (238), Expect = 9.576e-23
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 0
Query:   21 EATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTP-ALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDEN 122
            EA R+   +R L L+ S DL CVN++CEKVGEPC+CRL+R L +    L  LVL+ N LT LP  VF+LQ L+ LDLS N L E+P  V++L SL++L V  N
Sbjct:    2 EANRS-PSMRALDLTGSSDLLCVNMVCEKVGEPCVCRLSRVLERNGRELRSLVLAGNKLTQLPASVFELQHLQVLDLSENELTEIPADVVKLESLKILDVRNN 103          
BLAST of EWM26129.1 vs. NCBI_GenBank
Match: gi|301109419|ref|XP_002903790.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262096793|gb|EEY54845.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 96.6709 bits (239), Expect = 3.472e-22
Identity = 53/104 (50.96%), Postives = 65/104 (62.50%), Query Frame = 0
Query:   19 LSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDEN 122
            L +  R+G R+ +L LS S DL C  LMCE VG+ C CRLA TL + P L+RL LSNN L  LP+ V+ LQSL  LDL  N L  LP  V +L+ LE L +  N
Sbjct:   31 LRDIARSGARVVKLQLSKSSDLVCRQLMCEHVGDACACRLALTLERVPRLQRLDLSNNQLRDLPDAVYALQSLETLDLQQNRLTSLPTDVHKLTQLETLDIRHN 134          
BLAST of EWM26129.1 vs. NCBI_GenBank
Match: gi|1173946227|gb|OQR94779.1| (hypothetical protein ACHHYP_00922 [Achlya hypogyna])

HSP 1 Score: 93.9745 bits (232), Expect = 1.274e-21
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = 0
Query:   14 LVAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDEN 122
            ++AKSL EA      +R+L+L  SEDL C NLMCE+VGE C+C+L+  L + P L  L +S N L  LP  V  L++L  LD+S N L+ L PS+ QL++LE L V++N
Sbjct:    1 MIAKSLREAATHTTAVRKLLLRKSEDLVCRNLMCERVGEACVCKLSLVLERLPELTHLDVSGNKLGALPPAVAALRNLTELDVSGNRLKSL-PSLAQLTALETLRVEDN 108          
BLAST of EWM26129.1 vs. NCBI_GenBank
Match: gi|567957330|gb|ETK82933.1| (hypothetical protein L915_11777 [Phytophthora parasitica] >gi|567985980|gb|ETL36312.1| hypothetical protein L916_11702 [Phytophthora parasitica] >gi|570947415|gb|ETP12672.1| hypothetical protein F441_12030 [Phytophthora parasitica CJ01A1] >gi|970654846|gb|KUF93099.1| Glucanase inhibitor protein 1 [Phytophthora nicotianae])

HSP 1 Score: 94.7449 bits (234), Expect = 1.558e-21
Identity = 55/120 (45.83%), Postives = 70/120 (58.33%), Query Frame = 0
Query:    5 RTFLQTSQPLVAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKVGEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNLLRELPPSVLQLSSLEVLSVDENLL 124
             +F   S  L A  L +  RAG R+ +L L  S DL C  LMCE VG+ C CRLA  L + P L+RL LSNN L  LP+ V+ LQSL  LD+ +N L  L   V +L+ L++L V  N L
Sbjct:   16 HSFSTASTALSATCLRDIARAGARVVDLQLPKSGDLVCRQLMCEHVGDACACRLALALERVPRLQRLDLSNNQLRALPDAVYALQSLATLDVQHNRLTLLSTDVQKLTQLKILDVRHNQL 135          
The following BLAST results are available for this feature:
BLAST of EWM26129.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108123|gb|EWM26129.1|1.119e-106100.00peptidyl-prolyl cis-trans fkbp-type [Nannochlorops... [more]
gi|635362032|emb|CCI49145.1|2.240e-2647.32unnamed protein product [Albugo candida][more]
gi|325186415|emb|CCA20920.1|2.823e-2646.09conserved hypothetical protein [Albugo laibachii N... [more]
gi|695409974|ref|XP_009525062.1|3.506e-2550.85hypothetical protein PHYSODRAFT_496570 [Phytophtho... [more]
gi|299116608|emb|CBN76235.1|5.603e-2548.65Hypothetical leucine rich repeat protein [Ectocarp... [more]
gi|669147748|ref|XP_008609436.1|8.300e-2347.27hypothetical protein SDRG_05498 [Saprolegnia dicli... [more]
gi|255083266|ref|XP_002504619.1|9.576e-2352.43predicted protein [Micromonas commoda] >gi|2265198... [more]
gi|301109419|ref|XP_002903790.1|3.472e-2250.96conserved hypothetical protein [Phytophthora infes... [more]
gi|1173946227|gb|OQR94779.1|1.274e-2147.71hypothetical protein ACHHYP_00922 [Achlya hypogyna... [more]
gi|567957330|gb|ETK82933.1|1.558e-2145.83hypothetical protein L915_11777 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4572rna4572Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications