rna4572, rna4572 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4572
Unique Name	rna4572
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	870
Alignment location	CM002463.1:942573..943049 -

Link to JBrowse

Properties


Property Name	Value
Product	peptidyl-prolyl cis-trans fkbp-type
Orig transcript id	gnl\|cribi\|Naga_100014g50.9306.mrna
Orig protein id	gnl\|cribi\|Naga_100014g50.9306
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:942573..943049 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g50	gene4411	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26129.1	cds4560	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4572	rna4572-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:942573..943049-
coding sequence from alignment at CM002463.1:942573..943049-

mRNA sequence

>rna4572 ID=rna4572|Name=rna4572|organism=Nannochloropsis gaditana|type=mRNA|length=870bp
ATGCACACACTCAAGATAATGCGCGGGAGGGTTCAACCTCCCCTGTCCTT
GATGCAGACCTTTGAGTTATCCAAGATTGCTAGAAGCGACATTACGCGCG
GAATTGGGAGCACTAGTACAGCCCGGCTCGGAAAACCCTCGAGTCAGGGA
GCTTACAAGGGCAGCATCGATCCAAAGCCCGACCTGCCGCCAGATATATC
GGATAAAGAAGCCGCACGCTTGAAAAAGGTAGAAAAAATCAAGGAAGAAA
TTCGACGGGGTTACTTTTACGAATTGGGCCAGATCAATCGGACGAAAAGT
AAGCTATTTGAGGCGGACAAGGAGTTGGTGCCGCCGCAGAAAGCCCTCAA
GTTCCCATCCTTCCAGGCTGAGTCACTGCTGGGGGTGACACACCAATTCG
GGGCTCTTCTCAGGCAGACGAATAACCAGGTTTCGCTTGTGGGAGTATCA
TTTCGGGACTCCGGTTTCCGTGTACTTCCTGACTGGATAAAGCCTTTCCT
CGAGGAGTTTGCGCAGACCCCGGCAATGACGGTGTTACAGGTCTCATTCG
AGGACAGAAGTTGGCTGAAGCTGCTTAAATTCCTCCTCGTGAACGGGCAG
AAGGCTAGCATTGAGCGCGAGCGCCACGGACAATCCTTTTTGCGGTTTGG
ATCCACTCAGGACATTCGCGAAGGCATGGGAATCGACAACCGAATGGTTG
GCTACGTTTTCTTGGTTGATAAGCTTGGGCGCATGCGCTGGAGAGGAACG
GGGCGGCCTAGCGACGAAGAGATAGGATCGATGCTCAAATGTGCTCACGA
ACTTTTTGAGGAACAGGCGTCCACTGGAAAGACGAAACGGCTCCAAGGCA
AAATAAGTACGAGGGCTTGA

protein sequence of rna4572

>rna4572-protein ID=rna4572-protein|Name=rna4572|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MNLPRTFLQTSQPLVAKSLSEATRAGKRLRELILSSSEDLRCVNLMCEKV
GEPCICRLARTLSQTPALERLVLSNNNLTVLPEEVFKLQSLRYLDLSNNL
LRELPPSVLQLSSLEVLSVDENLLADSSTGNIVVDDSKKQVRQFIRERTA
VPSCKTTK

mRNA from alignment at CM002463.1:942573..943049-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4572 ID=rna4572|Name=rna4572|organism=Nannochloropsis gaditana|type=mRNA|length=477bp|location=Sequence derived from alignment at CM002463.1:942573..943049- (Nannochloropsis gaditana)
ATGAATTTACCACGAACTTTTTTGCAAACATCCCAGCCCCTCGTTGCAAA
GAGCCTGTCTGAAGCCACGCGGGCGGGGAAACGCTTGCGGGAGTTGATAC
TTTCCTCAAGTGAAGATTTGAGATGTGTCAATCTGATGTGTGAGAAAGTC
GGGGAGCCATGCATCTGCCGACTTGCCAGGACCCTTTCACAAACACCTGC
CCTTGAGCGCCTTGTCCTTAGCAATAACAATCTTACGGTCTTACCGGAGG
AAGTGTTCAAACTGCAAAGCCTTCGGTACCTAGATTTGTCAAACAACCTT
TTGCGGGAGCTCCCGCCTTCCGTCCTACAGCTGTCTAGCCTCGAGGTGCT
GTCTGTGGACGAGAATCTATTGGCGGATAGTTCTACTGGCAACATTGTAG
TAGACGATTCGAAAAAGCAAGTACGTCAATTTATAAGAGAGAGAACGGCG
GTACCGAGCTGTAAAACAACAAAGTAA

Coding sequence (CDS) from alignment at CM002463.1:942573..943049-

>rna4572 ID=rna4572|Name=rna4572|organism=Nannochloropsis gaditana|type=CDS|length=477bp|location=Sequence derived from alignment at CM002463.1:942573..943049- (Nannochloropsis gaditana)
ATGAATTTACCACGAACTTTTTTGCAAACATCCCAGCCCCTCGTTGCAAA
GAGCCTGTCTGAAGCCACGCGGGCGGGGAAACGCTTGCGGGAGTTGATAC
TTTCCTCAAGTGAAGATTTGAGATGTGTCAATCTGATGTGTGAGAAAGTC
GGGGAGCCATGCATCTGCCGACTTGCCAGGACCCTTTCACAAACACCTGC
CCTTGAGCGCCTTGTCCTTAGCAATAACAATCTTACGGTCTTACCGGAGG
AAGTGTTCAAACTGCAAAGCCTTCGGTACCTAGATTTGTCAAACAACCTT
TTGCGGGAGCTCCCGCCTTCCGTCCTACAGCTGTCTAGCCTCGAGGTGCT
GTCTGTGGACGAGAATCTATTGGCGGATAGTTCTACTGGCAACATTGTAG
TAGACGATTCGAAAAAGCAAGTACGTCAATTTATAAGAGAGAGAACGGCG
GTACCGAGCTGTAAAACAACAAAGTAA

Synonyms

Publications