EWM26114.1, cds4529 (CDS) Nannochloropsis gaditana

Overview
NameEWM26114.1
Unique Namecds4529
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:874914..874920 -
Alignment locationCM002463.1:873704..874824 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26114.1
Productphosphoglycerate kinase
Orig transcript idgnl|cribi|Naga_100014g18.9291.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:874914..874920 -
CM002463.1supercontigCM002463.1:873704..874824 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009056catabolic process
GO:0006091generation of precursor metabolites and energy
GO:0005975carbohydrate metabolic process
GO:0006096glycolytic process
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0000166nucleotide binding
GO:0004618phosphoglycerate kinase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
Vocabulary: INTERPRO
TermDefinition
IPR015824Phosphoglycerate_kinase_N
IPR001576Phosphoglycerate_kinase
Homology
BLAST of EWM26114.1 vs. NCBI_GenBank
Match: gi|585108108|gb|EWM26114.1| (phosphoglycerate kinase [Nannochloropsis gaditana])

HSP 1 Score: 768.844 bits (1984), Expect = 0.000e+0
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0
Query:    1 MSGKETLKSLASKIDLKNQRVFCRVDFNGTSYWSGVMRIYVRSLPTLTASPLPLSPVTVPLDKEAKVTDDTRIRAALPTIKFLVVRTSPQCWLFGLHVMVSSRKGILCPACARLFSSSSGVSNQSTVNALLVGLFNYLEYLTRDLPLPRVANPGQEKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTRGKRWRLIRRSEGVWCYSWRVWANIECRRLVCSAFLSLRGSPRRWVADASYCDANLDLREMHLVIAHC 375
            MSGKETLKSLASKIDLKNQRVFCRVDFNGTSYWSGVMRIYVRSLPTLTASPLPLSPVTVPLDKEAKVTDDTRIRAALPTIKFLVVRTSPQCWLFGLHVMVSSRKGILCPACARLFSSSSGVSNQSTVNALLVGLFNYLEYLTRDLPLPRVANPGQEKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTRGKRWRLIRRSEGVWCYSWRVWANIECRRLVCSAFLSLRGSPRRWVADASYCDANLDLREMHLVIAHC
Sbjct:    1 MSGKETLKSLASKIDLKNQRVFCRVDFNGTSYWSGVMRIYVRSLPTLTASPLPLSPVTVPLDKEAKVTDDTRIRAALPTIKFLVVRTSPQCWLFGLHVMVSSRKGILCPACARLFSSSSGVSNQSTVNALLVGLFNYLEYLTRDLPLPRVANPGQEKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTRGKRWRLIRRSEGVWCYSWRVWANIECRRLVCSAFLSLRGSPRRWVADASYCDANLDLREMHLVIAHC 375          
BLAST of EWM26114.1 vs. NCBI_GenBank
Match: gi|585108107|gb|EWM26113.1| (phosphoglycerate kinase [Nannochloropsis gaditana])

HSP 1 Score: 308.531 bits (789), Expect = 1.324e-98
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0
Query:  156 EKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTR 308
            EKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKV T+
Sbjct:   85 EKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVSTK 237          

HSP 2 Score: 176.792 bits (447), Expect = 9.493e-48
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MSGKETLKSLASKIDLKNQRVFCRVDFNGTSYWSGVMRIYVRSLPTLTASPLPLSPVTVPLDKEAKVTDDTRIRAALPTIKFLV 84
            MSGKETLKSLASKIDLKNQRVFCRVDFNGTSYWSGVMRIYVRSLPTLTASPLPLSPVTVPLDKEAKVTDDTRIRAALPTIKFLV
Sbjct:    1 MSGKETLKSLASKIDLKNQRVFCRVDFNGTSYWSGVMRIYVRSLPTLTASPLPLSPVTVPLDKEAKVTDDTRIRAALPTIKFLV 84          
BLAST of EWM26114.1 vs. NCBI_GenBank
Match: gi|695052859|ref|XP_009414502.1| (PREDICTED: phosphoglycerate kinase, cytosolic-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 229.95 bits (585), Expect = 2.192e-68
Identity = 111/153 (72.55%), Postives = 123/153 (80.39%), Query Frame = 0
Query:  156 EKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTR 308
            E GARV+LCSHLGRPKGVT    + P+  RLS+LLG  V+   DC+GEEVE+ V AL  G VLLLENVRFY+EEEKNAPEFA KLA LADVYVNDAFGTAHRAHASTEG+AK +K   AGFLM+KEL YL GAV  P RPFAAIVGGSKV T+
Sbjct:   54 EHGARVILCSHLGRPKGVTPKYSLKPLVPRLSDLLGVNVEMADDCIGEEVEKIVAALPDGGVLLLENVRFYREEEKNAPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKFLKPAVAGFLMQKELDYLVGAVGNPKRPFAAIVGGSKVSTK 206          
BLAST of EWM26114.1 vs. NCBI_GenBank
Match: gi|1098774915|ref|XP_018847908.1| (PREDICTED: phosphoglycerate kinase, cytosolic-like [Juglans regia] >gi|1098774917|ref|XP_018847909.1| PREDICTED: phosphoglycerate kinase, cytosolic-like [Juglans regia])

HSP 1 Score: 229.95 bits (585), Expect = 2.467e-68
Identity = 111/154 (72.08%), Postives = 124/154 (80.52%), Query Frame = 0
Query:  155 QEKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTR 308
            Q  GA+V+LCSHLGRPKGVT    + P+  RLSELLG EVK   DC+GEEV++ V+ L  G VLLLENVRFYKEEEKN PEFA KLA LADVYVNDAFGTAHRAHASTEG+AK +K   AGFLM+KEL YL GAV+ P RPFAAIVGGSKV T+
Sbjct:   53 QSHGAKVILCSHLGRPKGVTPKYSLKPLVPRLSELLGLEVKMGNDCIGEEVQKIVDELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLKPAVAGFLMQKELDYLVGAVANPKRPFAAIVGGSKVSTK 206          
BLAST of EWM26114.1 vs. NCBI_GenBank
Match: gi|729334368|ref|XP_010537804.1| (PREDICTED: phosphoglycerate kinase, cytosolic [Tarenaya hassleriana] >gi|729334371|ref|XP_010537805.1| PREDICTED: phosphoglycerate kinase, cytosolic [Tarenaya hassleriana])

HSP 1 Score: 228.409 bits (581), Expect = 8.194e-68
Identity = 111/151 (73.51%), Postives = 122/151 (80.79%), Query Frame = 0
Query:  158 GARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTR 308
            GARV+LCSHLGRPKGVT    + P+  RLSELLG EVK   D +GEEVE  V  LS G VLLLENVRFYKEEEKN PEFA KLA LADVYVNDAFGTAHRAHASTEG+AK +K + AGFLM+KEL YL GAV+ P +PFAAIVGGSKV T+
Sbjct:   56 GARVILCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVKMANDSIGEEVETLVAGLSEGGVLLLENVRFYKEEEKNDPEFAKKLAALADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTK 206          
BLAST of EWM26114.1 vs. NCBI_GenBank
Match: gi|764623353|ref|XP_011468861.1| (PREDICTED: phosphoglycerate kinase, cytosolic [Fragaria vesca subsp. vesca])

HSP 1 Score: 227.254 bits (578), Expect = 1.995e-67
Identity = 111/154 (72.08%), Postives = 123/154 (79.87%), Query Frame = 0
Query:  155 QEKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTR 308
            Q  GA+V+L SHLGRPKGVT    + P+  RLSELLG EVK   DCVGEEVE+ V  L  G VLLLENVRFYKEEEKN PEFA KLA LADVYVNDAFGTAHRAHASTEG+AK +K + AG+LM+KEL YL GAVS P RPFAAIVGGSKV ++
Sbjct:   53 QGNGAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGVEVKIANDCVGEEVEKLVAGLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGVAKYLKPSVAGYLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSK 206          
BLAST of EWM26114.1 vs. NCBI_GenBank
Match: gi|657982239|ref|XP_008383158.1| (PREDICTED: phosphoglycerate kinase, cytosolic [Malus domestica])

HSP 1 Score: 227.254 bits (578), Expect = 2.293e-67
Identity = 111/151 (73.51%), Postives = 122/151 (80.79%), Query Frame = 0
Query:  158 GARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTR 308
            GA+V+L SHLGRPKGVT    + P+  RLSELLG EVK   DC+GEEVE+ V  L  G VLLLENVRFYKEEEKN PEFA KLA LADVYVNDAFGTAHRAHASTEG+AK +K + AGFLM+KEL YL GAVS P RPFAAIVGGSKV T+
Sbjct:   56 GAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGLEVKIANDCIGEEVEKLVAQLPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADVYVNDAFGTAHRAHASTEGLAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSTK 206          
BLAST of EWM26114.1 vs. NCBI_GenBank
Match: gi|695001705|ref|XP_009417722.1| (PREDICTED: phosphoglycerate kinase, cytosolic [Musa acuminata subsp. malaccensis] >gi|695001707|ref|XP_009417729.1| PREDICTED: phosphoglycerate kinase, cytosolic [Musa acuminata subsp. malaccensis])

HSP 1 Score: 226.868 bits (577), Expect = 3.408e-67
Identity = 108/153 (70.59%), Postives = 123/153 (80.39%), Query Frame = 0
Query:  156 EKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTR 308
            E GARV+LCSHLGRPKGVT    + P+  RLSELLG +V+   DC+GEEVE+ V AL  G VLLLENVRFYKEEEKN PEFA KLA LAD+YVNDAFGTAHRAHASTEG+ K +K   AG+LM+KEL YL GAV+ P +PFAAIVGGSKV T+
Sbjct:   54 EHGARVILCSHLGRPKGVTPKYSLKPLVPRLSELLGVDVEMANDCIGEEVEKMVAALPDGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVTKFLKPAVAGYLMQKELDYLVGAVANPKKPFAAIVGGSKVSTK 206          
BLAST of EWM26114.1 vs. NCBI_GenBank
Match: gi|672171814|ref|XP_008805982.1| (PREDICTED: phosphoglycerate kinase, cytosolic [Phoenix dactylifera] >gi|672196757|ref|XP_008776888.1| PREDICTED: phosphoglycerate kinase, cytosolic [Phoenix dactylifera])

HSP 1 Score: 226.483 bits (576), Expect = 4.477e-67
Identity = 109/154 (70.78%), Postives = 122/154 (79.22%), Query Frame = 0
Query:  155 QEKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTR 308
             + GARV+L SHLGRPKGVT    + P+  RLSELLG  V+   DC+GEEVE+ V AL  G VLLLENVRFYKEEEKN PEFA KLA LAD+YVNDAFGTAHRAHASTEG+AK +K   AGFLM+KEL YL GAV+ P RPFAAIVGGSKV T+
Sbjct:   53 MDHGARVILSSHLGRPKGVTPKYSLKPLVPRLSELLGVSVEMANDCIGEEVEKMVAALPNGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKFLKPAVAGFLMQKELDYLVGAVANPKRPFAAIVGGSKVSTK 206          
BLAST of EWM26114.1 vs. NCBI_GenBank
Match: gi|743855887|ref|XP_010941661.1| (PREDICTED: phosphoglycerate kinase 3, cytosolic isoform X2 [Elaeis guineensis] >gi|1130620103|ref|XP_019711196.1| PREDICTED: phosphoglycerate kinase 3, cytosolic isoform X2 [Elaeis guineensis])

HSP 1 Score: 226.483 bits (576), Expect = 5.345e-67
Identity = 107/154 (69.48%), Postives = 123/154 (79.87%), Query Frame = 0
Query:  155 QEKGARVVLCSHLGRPKGVTESLRMAPVATRLSELLGSEVKYVKDCVGEEVEQQVEALSAGQVLLLENVRFYKEEEKNAPEFAAKLARLADVYVNDAFGTAHRAHASTEGIAKLVKTTCAGFLMEKELSYLDGAVSKPTRPFAAIVGGSKVRTR 308
             E GA+V+LCSHLGRPKGVT    + P+  RLSELLG  V+   DC+GE V++ V AL  G VLLLENVRFYKEEEKN PEFA KLA LAD+YVNDAFGTAHRAHASTEG+AK +K + AGFLM+KEL YL GAV+ P RPFAAI+GGSKV T+
Sbjct:   53 MEHGAKVILCSHLGRPKGVTPKYSLKPLVPRLSELLGVNVEMADDCIGEGVQKMVSALPDGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKFLKPSVAGFLMQKELDYLVGAVANPKRPFAAIIGGSKVSTK 206          
The following BLAST results are available for this feature:
BLAST of EWM26114.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108108|gb|EWM26114.1|0.000e+0100.00phosphoglycerate kinase [Nannochloropsis gaditana][more]
gi|585108107|gb|EWM26113.1|1.324e-9898.69phosphoglycerate kinase [Nannochloropsis gaditana][more]
gi|695052859|ref|XP_009414502.1|2.192e-6872.55PREDICTED: phosphoglycerate kinase, cytosolic-like... [more]
gi|1098774915|ref|XP_018847908.1|2.467e-6872.08PREDICTED: phosphoglycerate kinase, cytosolic-like... [more]
gi|729334368|ref|XP_010537804.1|8.194e-6873.51PREDICTED: phosphoglycerate kinase, cytosolic [Tar... [more]
gi|764623353|ref|XP_011468861.1|1.995e-6772.08PREDICTED: phosphoglycerate kinase, cytosolic [Fra... [more]
gi|657982239|ref|XP_008383158.1|2.293e-6773.51PREDICTED: phosphoglycerate kinase, cytosolic [Mal... [more]
gi|695001705|ref|XP_009417722.1|3.408e-6770.59PREDICTED: phosphoglycerate kinase, cytosolic [Mus... [more]
gi|672171814|ref|XP_008805982.1|4.477e-6770.78PREDICTED: phosphoglycerate kinase, cytosolic [Pho... [more]
gi|743855887|ref|XP_010941661.1|5.345e-6769.48PREDICTED: phosphoglycerate kinase 3, cytosolic is... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4541rna4541Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications