rna4517, rna4517 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4517
Unique Name	rna4517
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	939
Alignment location	CM002463.1:814557..816082 -

Link to JBrowse

Properties


Property Name	Value
Product	Peptidyl-prolyl cis-trans isomerase, FKBP-type
Orig transcript id	gnl\|cribi\|Naga_100121g9.10140.mrna
Orig protein id	gnl\|cribi\|Naga_100121g9.10140
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:814557..816082 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100121g9	gene4359	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4517	rna4517-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26168.1	cds4506	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:814557..816082-
coding sequence from alignment at CM002463.1:814557..816082-

mRNA sequence

>rna4517 ID=rna4517|Name=rna4517|organism=Nannochloropsis gaditana|type=mRNA|length=939bp
ATGCGCAGAGTCGCGGAGCCACCGATCGTTGTTGTCATGTCGCGCGAGGT
GCAGGACTGGGGAGACTATGAAGATGATGAGGAGCTCCCCCAACCAGTCG
AGGGAAAACCTGACGAAAATGGTGTAGTGACGCGGACAGAGTGGGCATGG
AAAGACCAGCGGAAAGTTCGATATGTTCAGAAATTCAAAGTGGAAGAAAT
CACGACCCACGTTCCGAAACGAACATTCGTGCGCAAGACCTGGGCCCGAT
TTGGGGACGCCCGCGATGCTCATGTCCGAGCCGAGGAGCAAAGTATTGCG
ATTGAAGATCCTCACAGCCTGGCGGAAGATGAACCGGCCGCAGATTTGAA
GAACTTGGGCTTAATCCAACAAAAGCTAGCAGCACGAAAAGCGGGTCTGC
TGCCGTCGACAACCCCCGGAGAGTCTTTCGCCGAATACGATGGCGGCAGT
GGGATTGGAGGAATGAATGGGGGAGAGGAAGGGGCTCCGCGCCGGACCAT
GGGCGAGCGATTTGGTGGTGGAGGGCCAGGGCCCCAGACGGGGCCGGGCG
GGCGGGAAGAGGACAAGTTCCCAACGATCCGAGTGACAAACGTTTCGGAA
GACACGACGGACGATGACTTGAAGAACCTCTTCGGCCGATTCGGCGTCTT
GCATCGGGTGTTTTTGGCCAAGGACAAGGAGCGGAACACCTCGCGGGGGT
TCGCCTTCGTCTCCTTTCTGAAGAAGGAGGACGCGCAGAAGGCGATGGAC
AGCCTGCAGGGGTATGGTTACGACCACCTGATCCTCCGCTTGGAGTGGGC
GAACCCTCCGACGCAACGGCGGGAGGAGAGGGATGGGCTTGCCGGGGGGT
TCGTGTCCGGCTACGGGCAGCGCTTGGCGCAGGACACGACCATGGCTTAC
TCGACGGCGTCGAACCTGACGCATGGGACGGAAAGATAA

protein sequence of rna4517

>rna4517-protein ID=rna4517-protein|Name=rna4517|organism=Nannochloropsis gaditana|type=polypeptide|length=458bp
MAAQGSRTRKRSRTSGLPLCLLATRLRLSGACNLAVFFSFFLSLKLSYAF
MSIAPKLPHRSRAGLPLDPHAAFYYLVHSPPSPLISSPIMSAMNSGWRSG
PRPSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQ
LIANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGS
AEGYQDKIPPGAIIVTRLQLLNWRTLQGAGSTDVEDTRDLTKKWREEIDE
GTSPMTTWAAPPTVRKDSIGEATAEVNRENGGGSGPLAEAKAAMEKEQRE
EEQQQGEGIDGFSPPSTPRVEAIPEDANKGMKVDIDDMAMKNKLNPNQVV
IGTAPQYKWKERAGYMEVVVPVPEEVKKEDVLVHLTNRVLTVGFKTPENK
ESWIIGGDLFGPIELDSSFWVLSKDYTDELTEGKTCVEVRLEKKEPMRRI
WSTVFKDQ

mRNA from alignment at CM002463.1:814557..816082-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4517 ID=rna4517|Name=rna4517|organism=Nannochloropsis gaditana|type=mRNA|length=1526bp|location=Sequence derived from alignment at CM002463.1:814557..816082- (Nannochloropsis gaditana)
ATGGCAGCGCAGGGCAGCAGGACAAGGAAACGAAGCAGAACATCGGGCTT
GCCCCTATGTCTTCTAGCCACTCGACTACGGCTTTCAGGAGCCTGTAACC
TCGCAGTATTTTTCTCCTTCTTTTTAAGCCTCAAACTTTCTTACGCATTC
ATGTCCATAGCGCCGAAGCTACCGCATAGATCCCGGGCGGGCCTGCCTCT
CGACCCGCATGCCGCGTTTTATTACCTTGTCCACTCACCCCCCTCCCCCT
TAATCTCAAGTCCAATAATGTCCGCCATGAATTCTGGTTGGCGGAGTGGA
CCTCGTCCCAGTGATGAGCCTGTCGACTTGTCCGGAGACGGGGGTGTGTT
AAAAACTGTGCTACGGCCCGGCTACGGGTACAACCAGCAAACTCCACCGC
CTCATTCCTACTGCAAGGTAGCTTTTGTCATGAAAACATCCACGGGGCAG
TTGATAGCAAACCGGATGAAGAAACCGATGGAATTTATGCTGGTAAGATC
ACTTAAGAAGCTCACTCAGGACAGGGCAAGGAACCTTACCGATGTGCCAG
AAGTCTTTTCTGGGGCCATCAGACCAGCATGGCCGATGGATTGCGCTCAC
CCCACGATCGCCTCCCCTCTCCCCCTCCAATCCTCTCACAGGGCCTGGCA
AACCCGGAAGTGATCCGCGGCTGGGAGATGGCCGTGGCGACCATGAAGCC
CAACGAGGTTGCCGAGATCACGTGCAGTCCCGAGTATGCCTTCGGGTCGG
CAGAGGGGTACCAAGACAAGATTCCCCCCGGCGCCATCATCGTCACGCGC
TTGCAGCTCTTGAACTGGCGGACTCTCCAAGGAGCGGGCTCGACGGACGT
GGAGGATACTCGGGATCTGACCAAGAAATGGCGCGAAGAGATCGACGAAG
GCACGTCGCCCATGACCACCTGGGCCGCCCCCCCCACTGTCCGCAAAGAT
AGTATCGGAGAGGCAACAGCCGAGGTAAATAGAGAAAACGGTGGGGGTAG
CGGACCTTTGGCAGAGGCCAAGGCAGCGATGGAGAAGGAGCAACGCGAGG
AGGAGCAGCAGCAAGGGGAAGGCATTGATGGGTTCTCCCCGCCCTCGACC
CCGCGCGTGGAGGCGATTCCTGAGGACGCCAACAAGGGTATGAAGGTAGA
CATAGATGACATGGCCATGAAAAATAAGCTCAATCCGAATCAGGTCGTGA
TAGGAACGGCACCGCAGTATAAGTGGAAGGAAAGGGCGGGCTACATGGAA
GTGGTGGTACCAGTCCCCGAGGAGGTGAAGAAAGAAGATGTTTTAGTGCA
CCTGACCAATCGCGTCTTGACAGTGGGCTTCAAGACCCCGGAGAACAAGG
AAAGCTGGATAATTGGCGGTGACCTCTTCGGGCCCATCGAGCTGGACTCC
TCGTTTTGGGTGTTGAGCAAGGATTACACGGACGAGTTAACAGAGGGCAA
AACGTGCGTCGAAGTGAGGCTGGAGAAAAAAGAGCCCATGCGCAGGATAT
GGAGCACAGTATTCAAAGACCAATGA

Coding sequence (CDS) from alignment at CM002463.1:814557..816082-

>rna4517 ID=rna4517|Name=rna4517|organism=Nannochloropsis gaditana|type=CDS|length=2754bp|location=Sequence derived from alignment at CM002463.1:814557..816082- (Nannochloropsis gaditana)
GGCCTGGCAAACCCGGAAGTGATCCGCGGCTGGGAGATGGCCGTGGCGAC
CATGAAGCCCAACGAGGTTGCCGAGATCACGTGCAGTCCCGAGTATGCCT
TCGGGTCGGCAGAGGGGTACCAAGACAAGATTCCCCCCGGCGCCATCATC
GTCACGCGCTTGCAGCTCTTGAACTGGCGGACTCTCCAAGGAGCGGGCTC
GACGGACGTGGAGGATACTCGGGATCTGACCAAGAAATGGCGCGAAGAGA
TCGACGAAGGCACGTCGCCCATGACCACCTGGGCCGCCCCCCCCACTGTC
CGCAAAGATAGTATCGGAGAGGCAACAGCCGAGGTAAATAGAGAAAACGG
TGGGGGTAGCGGACCTTTGGCAGAGGCCAAGGCAGCGATGGAGAAGGAGC
AACGCGAGGAGGAGCAGCAGCAAGGGGAAGGCATTGATGGGTTCTCCCCG
CCCTCGACCCCGCGCGTGGAGGCGATTCCTGAGGACGCCAACAAGGGTAT
GAAGGTAGACATAGATGACATGGCCATGAAAAATAAGCTCAATCCGAATC
AGGTCGTGATAGGAACGGCACCGCAGTATAAGTGGAAGGAAAGGGCGGGC
TACATGGAAGTGGTGGTACCAGTCCCCGAGGAGGTGAAGAAAGAAGATGT
TTTAGTGCACCTGACCAATCGCGTCTTGACAGTGGGCTTCAAGACCCCGG
AGAACAAGGAAAGCTGGATAATTGGCGGTGACCTCTTCGGGCCCATCGAG
CTGGACTCCTCGTTTTGGGTGTTGAGCAAGGATTACACGGACGAGTTAAC
AGAGGGCAAAACGTGCGTCGAAGTGAGGCTGGAGAAAAAAGAGCCCATGC
GCAGGATATGGAGCACAGTATTCAAAGACCAATGAATGGCAGCGCAGGGC
AGCAGGACAAGGAAACGAAGCAGAACATCGGGCTTGCCCCTATGTCTTCT
AGCCACTCGACTACGGCTTTCAGGAGCCTGTAACCTCGCAGTATTTTTCT
CCTTCTTTTTAAGCCTCAAACTTTCTTACGCATTCATGTCCATAGCGCCG
AAGCTACCGCATAGATCCCGGGCGGGCCTGCCTCTCGACCCGCATGCCGC
GTTTTATTACCTTGTCCACTCACCCCCCTCCCCCTTAATCTCAAGTCCAA
TAATGTCCGCCATGAATTCTGGTTGGCGGAGTGGACCTCGTCCCAGTGAT
GAGCCTGTCGACTTGTCCGGAGACGGGGGTGTGTTAAAAACTGTGCTACG
GCCCGGCTACGGGTACAACCAGCAAACTCCACCGCCTCATTCCTACTGCA
AGGTAGCTTTTGTCATGAAAACATCCACGGGGCAGTTGATAGCAAACCGG
ATGAAGAAACCGATGGAATTTATGCTGGGCCTGGCAAACCCGGAAGTGAT
CCGCGGCTGGGAGATGGCCGTGGCGACCATGAAGCCCAACGAGGTTGCCG
AGATCACGTGCAGTCCCGAGTATGCCTTCGGGTCGGCAGAGGGGTACCAA
GACAAGATTCCCCCCGGCGCCATCATCGTCACGCGCTTGCAGCTCTTGAA
CTGGCGGACTCTCCAAGGAGCGGGCTCGACGGACGTGGAGGATACTCGGG
ATCTGACCAAGAAATGGCGCGAAGAGATCGACGAAGGCACGTCGCCCATG
ACCACCTGGGCCGCCCCCCCCACTGTCCGCAAAGATAGTATCGGAGAGGC
AACAGCCGAGGTAAATAGAGAAAACGGTGGGGGTAGCGGACCTTTGGCAG
AGGCCAAGGCAGCGATGGAGAAGGAGCAACGCGAGGAGGAGCAGCAGCAA
GGGGAAGGCATTGATGGGTTCTCCCCGCCCTCGACCCCGCGCGTGGAGGC
GATTCCTGAGGACGCCAACAAGGGTATGAAGGTAGACATAGATGACATGG
CCATGAAAAATAAGCTCAATCCGAATCAGGTCGTGATAGGAACGGCACCG
CAGTATAAGTGGAAGGAAAGGGCGGGCTACATGGAAGTGGTGGTACCAGT
CCCCGAGGAGGTGAAGAAAGAAGATGTTTTAGTGCACCTGACCAATCGCG
TCTTGACAGTGGGCTTCAAGACCCCGGAGAACAAGGAAAGCTGGATAATT
GGCGGTGACCTCTTCGGGCCCATCGAGCTGGACTCCTCGTTTTGGGTGTT
GAGCAAGGATTACACGGACGAGTTAACAGAGGGCAAAACGTGCGTCGAAG
TGAGGCTGGAGAAAAAAGAGCCCATGCGCAGGATATGGAGCACAGTATTC
AAAGACCAATGAATGGCAGCGCAGGGCAGCAGGACAAGGAAACGAAGCAG
AACATCGGGCTTGCCCCTATGTCTTCTAGCCACTCGACTACGGCTTTCAG
GAGCCTGTAACCTCGCAGTATTTTTCTCCTTCTTTTTAAGCCTCAAACTT
TCTTACGCATTCATGTCCATAGCGCCGAAGCTACCGCATAGATCCCGGGC
GGGCCTGCCTCTCGACCCGCATGCCGCGTTTTATTACCTTGTCCACTCAC
CCCCCTCCCCCTTAATCTCAAGTCCAATAATGTCCGCCATGAATTCTGGT
TGGCGGAGTGGACCTCGTCCCAGTGATGAGCCTGTCGACTTGTCCGGAGA
CGGGGGTGTGTTAAAAACTGTGCTACGGCCCGGCTACGGGTACAACCAGC
AAACTCCACCGCCTCATTCCTACTGCAAGGTAGCTTTTGTCATGAAAACA
TCCACGGGGCAGTTGATAGCAAACCGGATGAAGAAACCGATGGAATTTAT
GCTG

Synonyms

Publications