EWM26168.1, cds4506 (CDS) Nannochloropsis gaditana

Overview
NameEWM26168.1
Unique Namecds4506
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:815591..816082 -
Alignment locationCM002463.1:814557..815441 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26168.1
ProductPeptidyl-prolyl cis-trans isomerase, FKBP-type
Orig transcript idgnl|cribi|Naga_100121g9.10140.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:815591..816082 -
CM002463.1supercontigCM002463.1:814557..815441 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR008978HSP20-like_chaperone
IPR007052CS_dom
IPR001179PPIase_FKBP_dom
Homology
BLAST of EWM26168.1 vs. NCBI_GenBank
Match: gi|585108164|gb|EWM26168.1| (Peptidyl-prolyl cis-trans isomerase, FKBP-type [Nannochloropsis gaditana])

HSP 1 Score: 946.806 bits (2446), Expect = 0.000e+0
Identity = 458/458 (100.00%), Postives = 458/458 (100.00%), Query Frame = 0
Query:    1 MAAQGSRTRKRSRTSGLPLCLLATRLRLSGACNLAVFFSFFLSLKLSYAFMSIAPKLPHRSRAGLPLDPHAAFYYLVHSPPSPLISSPIMSAMNSGWRSGPRPSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLIANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWRTLQGAGSTDVEDTRDLTKKWREEIDEGTSPMTTWAAPPTVRKDSIGEATAEVNRENGGGSGPLAEAKAAMEKEQREEEQQQGEGIDGFSPPSTPRVEAIPEDANKGMKVDIDDMAMKNKLNPNQVVIGTAPQYKWKERAGYMEVVVPVPEEVKKEDVLVHLTNRVLTVGFKTPENKESWIIGGDLFGPIELDSSFWVLSKDYTDELTEGKTCVEVRLEKKEPMRRIWSTVFKDQ 458
            MAAQGSRTRKRSRTSGLPLCLLATRLRLSGACNLAVFFSFFLSLKLSYAFMSIAPKLPHRSRAGLPLDPHAAFYYLVHSPPSPLISSPIMSAMNSGWRSGPRPSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLIANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWRTLQGAGSTDVEDTRDLTKKWREEIDEGTSPMTTWAAPPTVRKDSIGEATAEVNRENGGGSGPLAEAKAAMEKEQREEEQQQGEGIDGFSPPSTPRVEAIPEDANKGMKVDIDDMAMKNKLNPNQVVIGTAPQYKWKERAGYMEVVVPVPEEVKKEDVLVHLTNRVLTVGFKTPENKESWIIGGDLFGPIELDSSFWVLSKDYTDELTEGKTCVEVRLEKKEPMRRIWSTVFKDQ
Sbjct:    1 MAAQGSRTRKRSRTSGLPLCLLATRLRLSGACNLAVFFSFFLSLKLSYAFMSIAPKLPHRSRAGLPLDPHAAFYYLVHSPPSPLISSPIMSAMNSGWRSGPRPSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLIANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWRTLQGAGSTDVEDTRDLTKKWREEIDEGTSPMTTWAAPPTVRKDSIGEATAEVNRENGGGSGPLAEAKAAMEKEQREEEQQQGEGIDGFSPPSTPRVEAIPEDANKGMKVDIDDMAMKNKLNPNQVVIGTAPQYKWKERAGYMEVVVPVPEEVKKEDVLVHLTNRVLTVGFKTPENKESWIIGGDLFGPIELDSSFWVLSKDYTDELTEGKTCVEVRLEKKEPMRRIWSTVFKDQ 458          
BLAST of EWM26168.1 vs. NCBI_GenBank
Match: gi|553180294|ref|XP_005853381.1| (translation initiation factor 3 subunit G [Nannochloropsis gaditana CCMP526] >gi|422295679|gb|EKU22978.1| translation initiation factor 3 subunit G [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 900.968 bits (2327), Expect = 0.000e+0
Identity = 436/439 (99.32%), Postives = 436/439 (99.32%), Query Frame = 0
Query:    1 MAAQGSRTRKRSRTSGLPLCLLATRLRLSGACNLAVFFSFFLSLKLSYAFMSIAPKLPHRSRAGLPLDPHAAFYYLVHSPPSPLISSPIMSAMNSGWRSGPRPSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLIANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWRTLQGAGSTDVEDTRDLTKKWREEIDEGTSPMTTWAAPPTVRKDSIGEATAEVNRENGGGSGPLAEAKAAMEKEQREEEQQQGEGIDGFSPPSTPRVEAIPEDANKGMKVDIDDMAMKNKLNPNQVVIGTAPQYKWKERAGYMEVVVPVPEEVKKEDVLVHLTNRVLTVGFKTPENKESWIIGGDLFGPIELDSSFWVLSKDYTDELTEGKTCVEV 439
            MAAQGSRTRKRSRTSGLPLCLLATRLRLSGACNLAVFFSFFLSLKLSYAFMSIAPKLP RSRAGLPLDPHAAFYYLVHSPPSP I SPIMSAMNSGWRSGPRPSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLIANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWRTLQGAGSTDVEDTRDLTKKWREEIDEGTSPMTTWAAPPTVRKDSIGEATAEVNRENGGGSGPLAEAKAAMEKEQREEEQQQGEGIDGFSPPSTPRVEAIPEDANKGMKVDIDDMAMKNKLNPNQVVIGTAPQYKWKERAGYMEVVVPVPEEVKKEDVLVHLTNRVLTVGFKTPENKESWIIGGDLFGPIELDSSFWVLSKDYTDELTEGKTCVEV
Sbjct:    1 MAAQGSRTRKRSRTSGLPLCLLATRLRLSGACNLAVFFSFFLSLKLSYAFMSIAPKLPRRSRAGLPLDPHAAFYYLVHSPPSPFIPSPIMSAMNSGWRSGPRPSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLIANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWRTLQGAGSTDVEDTRDLTKKWREEIDEGTSPMTTWAAPPTVRKDSIGEATAEVNRENGGGSGPLAEAKAAMEKEQREEEQQQGEGIDGFSPPSTPRVEAIPEDANKGMKVDIDDMAMKNKLNPNQVVIGTAPQYKWKERAGYMEVVVPVPEEVKKEDVLVHLTNRVLTVGFKTPENKESWIIGGDLFGPIELDSSFWVLSKDYTDELTEGKTCVEV 439          
BLAST of EWM26168.1 vs. NCBI_GenBank
Match: gi|299470111|emb|CBN78140.1| (peptidylprolyl isomerase-like protein [Ectocarpus siliculosus])

HSP 1 Score: 128.257 bits (321), Expect = 1.984e-28
Identity = 112/379 (29.55%), Postives = 170/379 (44.85%), Query Frame = 0
Query:  104 SDEPVDLSGD-GGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLIANRMK---KPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWRTLQG---AGSTDVEDTRDLTKKWREEIDEGTSPMTTWAAPPTVRKDSIGEATAEVNRENGGGSGPLAEAKAAMEKEQREEEQQQGEGIDGFSPPSTPRVEAIPEDAN-KGMKVDIDDMAMKNKLNPNQVVIGTAPQYKWKERAGYMEVVVPVPEEVKKEDVLVHLT-NRVLTVGFKTPENKESWIIGGDLFGPIELDSSFWVLSK------------DYTDELTE-----GKTCVEVRLEKKEPMRRIWSTVFK 456
            S E  DLSG  G  LK V   G+      PP  S  KV + MK   G+ IA+  +   KP EF LG    E   GW+ A++ M   EVA + C P+YAFG+A G   +IPP A + TRL+L +W  L     A    VE   +L ++W E++ +GTSPM          KD  G     +N++           +A M                      + +  A PE+ + +G K+   +     ++   Q V G  P + + ERA Y+++ +PVP   + +DV V +  +R+L V   T    +     G   G + LD   W++S                DE+ +     G+TCV+V LEK++P   +W  V++
Sbjct:  213 SGEFADLSGGRGSCLKRVDEDGF-ETDGNPPKGSKIKVHYKMKVVDGENIASSGEDRTKPFEFRLGRWPSEATHGWDKAISAMHRGEVATLICGPQYAFGAA-GAPPRIPPNATVETRLELEDWLDLAAEYNAVPGKVETDEELRERWSEDLADGTSPM----------KDEAG-----LNKK----------LQAEM----------------------SAKASATPENTDHRGKKIYDLESKEAREIMAKQKVQGYTPDFGYVERANYLDLYIPVPAGTRAKDVTVEIHPDRMLVVVKGTGVVTQ-----GHFQGKVALDGCHWLMSDLSLDPPGSTALGTQDDEVRQGPVYRGETCVQVFLEKRKPFDTLWENVYR 537          
BLAST of EWM26168.1 vs. NCBI_GenBank
Match: gi|1036896847|ref|XP_017025998.1| (PREDICTED: FK506-binding protein 59 [Drosophila kikkawai])

HSP 1 Score: 96.2857 bits (238), Expect = 5.562e-18
Identity = 55/128 (42.97%), Postives = 78/128 (60.94%), Query Frame = 0
Query:  103 PSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLI------ANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWR 224
            P++  +DLSGDGGVLK +LR G G    T  PH+ C V+      TG+L+      ++  ++P EF LG  N  VI+ ++M VATMK  E   +TC+P YA+G+A G    IPP A +V  L++LNW+
Sbjct:    2 PNENQIDLSGDGGVLKEILREGQG----TETPHTGCTVSL---HYTGRLVDGTEFDSSVAREPFEFPLGKGN--VIKAFDMGVATMKRGERCFLTCAPNYAYGAA-GSPPAIPPDATLVFELEMLNWK 119          
BLAST of EWM26168.1 vs. NCBI_GenBank
Match: gi|38048605|gb|AAR10205.1| (similar to Drosophila melanogaster FKBP59, partial [Drosophila yakuba])

HSP 1 Score: 90.8929 bits (224), Expect = 9.834e-18
Identity = 54/129 (41.86%), Postives = 73/129 (56.59%), Query Frame = 0
Query:  103 PSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLIAN-------RMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWR 224
            P D  +DLSGDGGVLK +L+ G G    T  PHS C V+      TG+L+            +P EF LG  N  VI+ ++M VATMK  E   +TC+P YA+G+A G    IPP A ++  L++L W+
Sbjct:    2 PEDNKIDLSGDGGVLKEILKEGTG----TETPHSGCTVSLHY---TGRLVDGTEFDSSVSRNEPFEFPLGKGN--VIKAFDMGVATMKLGERCFLTCAPNYAYGAA-GSPPAIPPDATLIFELEMLGWK 120          
BLAST of EWM26168.1 vs. NCBI_GenBank
Match: gi|1189078547|ref|XP_020807345.1| (FK506-binding protein 59 [Drosophila serrata])

HSP 1 Score: 94.3597 bits (233), Expect = 2.899e-17
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 0
Query:  103 PSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLI------ANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWR 224
            P++  +DLSGDGGVLK +L+ G G    T  PH+ C V+      TG+L+      ++  ++P EF LG  N  VI+ ++M VATMK  E   +TC+P YA+G+A G    IPP A ++  L++LNW+
Sbjct:    2 PNENQIDLSGDGGVLKEILKEGQG----TETPHTGCTVSL---HYTGRLVDGTEFDSSISREPFEFPLGKGN--VIKAFDMGVATMKRGERCFLTCAPNYAYGAA-GSPPTIPPDATLIFELEMLNWK 119          
BLAST of EWM26168.1 vs. NCBI_GenBank
Match: gi|195473391|ref|XP_002088979.1| (FKBP59 [Drosophila yakuba] >gi|194175080|gb|EDW88691.1| FKBP59 [Drosophila yakuba])

HSP 1 Score: 92.0485 bits (227), Expect = 1.596e-16
Identity = 54/129 (41.86%), Postives = 74/129 (57.36%), Query Frame = 0
Query:  103 PSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLI-------ANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWR 224
            P D  +DLSGDGGVLK +L+ G G    T  PHS C V+      TG+L+       +    +P EF LG  N  VI+ ++M VATMK  E   +TC+P YA+G+A G    IPP A ++  L++L W+
Sbjct:    2 PEDNKIDLSGDGGVLKEILKEGTG----TETPHSGCTVSL---HYTGRLVDGTEFDSSVSRNEPFEFPLGKGN--VIKAFDMGVATMKLGERCFLTCAPNYAYGAA-GSPPAIPPDATLIFELEMLGWK 120          
BLAST of EWM26168.1 vs. NCBI_GenBank
Match: gi|195339555|ref|XP_002036385.1| (GM17712 [Drosophila sechellia] >gi|194130265|gb|EDW52308.1| GM17712 [Drosophila sechellia])

HSP 1 Score: 91.6633 bits (226), Expect = 2.163e-16
Identity = 54/129 (41.86%), Postives = 73/129 (56.59%), Query Frame = 0
Query:  103 PSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLIANR-------MKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWR 224
            P D  +DLSGDGGVLK +L+ G G    T  PHS C V+      TG+L+            +P EF LG  N  VI+ ++M VATMK  E   +TC+P YA+G+A G    IPP A ++  L++L W+
Sbjct:    2 PEDNKIDLSGDGGVLKEILKEGTG----TETPHSGCTVSL---HYTGRLVDGTEFDSSLTRNEPFEFPLGKGN--VIKAFDMGVATMKLGERCFLTCAPNYAYGAA-GSPPAIPPDATLIFELEMLGWK 120          
BLAST of EWM26168.1 vs. NCBI_GenBank
Match: gi|194190830|gb|EDX04406.1| (GD23632 [Drosophila simulans])

HSP 1 Score: 91.2781 bits (225), Expect = 2.485e-16
Identity = 54/129 (41.86%), Postives = 72/129 (55.81%), Query Frame = 0
Query:  103 PSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLIANR-------MKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWR 224
            P D  +DLSGDGGVLK +L+ G G    T  PHS C V+      TG+L+             P EF LG  N  VI+ ++M VATMK  E   +TC+P YA+G+A G    IPP A ++  L++L W+
Sbjct:    2 PEDNKIDLSGDGGVLKEILKEGTG----TETPHSGCTVSL---HYTGRLVDGTEFDSSLTRNDPFEFPLGKGN--VIKAFDMGVATMKLGERCFLTCAPNYAYGAA-GSPPAIPPDATLIFELEMLGWK 120          
BLAST of EWM26168.1 vs. NCBI_GenBank
Match: gi|194859312|ref|XP_001969353.1| (uncharacterized protein Dere_GG10059 [Drosophila erecta] >gi|190661220|gb|EDV58412.1| uncharacterized protein Dere_GG10059 [Drosophila erecta])

HSP 1 Score: 91.6633 bits (226), Expect = 2.577e-16
Identity = 54/129 (41.86%), Postives = 74/129 (57.36%), Query Frame = 0
Query:  103 PSDEPVDLSGDGGVLKTVLRPGYGYNQQTPPPHSYCKVAFVMKTSTGQLI-------ANRMKKPMEFMLGLANPEVIRGWEMAVATMKPNEVAEITCSPEYAFGSAEGYQDKIPPGAIIVTRLQLLNWR 224
            P +  +DLSGDGGVLK +LR G G    T  PHS C V+      TG+L+       +    +P EF LG  N  VI+ ++M VATMK  E   +TC+P YA+G+A G    IPP A ++  L++L W+
Sbjct:    2 PEENKIDLSGDGGVLKEILREGTG----TETPHSGCTVSL---HYTGRLVDGTEFDSSVSRNEPFEFPLGKGN--VIKAFDMGVATMKLGERCFLTCAPNYAYGAA-GSPPAIPPDATLIFELEMLGWK 120          
The following BLAST results are available for this feature:
BLAST of EWM26168.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108164|gb|EWM26168.1|0.000e+0100.00Peptidyl-prolyl cis-trans isomerase, FKBP-type [Na... [more]
gi|553180294|ref|XP_005853381.1|0.000e+099.32translation initiation factor 3 subunit G [Nannoch... [more]
gi|299470111|emb|CBN78140.1|1.984e-2829.55peptidylprolyl isomerase-like protein [Ectocarpus ... [more]
gi|1036896847|ref|XP_017025998.1|5.562e-1842.97PREDICTED: FK506-binding protein 59 [Drosophila ki... [more]
gi|38048605|gb|AAR10205.1|9.834e-1841.86similar to Drosophila melanogaster FKBP59, partial... [more]
gi|1189078547|ref|XP_020807345.1|2.899e-1741.41FK506-binding protein 59 [Drosophila serrata][more]
gi|195473391|ref|XP_002088979.1|1.596e-1641.86FKBP59 [Drosophila yakuba] >gi|194175080|gb|EDW886... [more]
gi|195339555|ref|XP_002036385.1|2.163e-1641.86GM17712 [Drosophila sechellia] >gi|194130265|gb|ED... [more]
gi|194190830|gb|EDX04406.1|2.485e-1641.86GD23632 [Drosophila simulans][more]
gi|194859312|ref|XP_001969353.1|2.577e-1641.86uncharacterized protein Dere_GG10059 [Drosophila e... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4517rna4517Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications