EWM26185.1, cds4480 (CDS) Nannochloropsis gaditana

Overview
NameEWM26185.1
Unique Namecds4480
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:724065..725012 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26185.1
Productthioredoxin domain-containing protein 9
Orig transcript idgnl|cribi|Naga_100072g22.8018.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:724065..725012 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR013766Thioredoxin_domain
Homology
BLAST of EWM26185.1 vs. NCBI_GenBank
Match: gi|585108182|gb|EWM26185.1| (thioredoxin domain-containing protein 9 [Nannochloropsis gaditana])

HSP 1 Score: 647.892 bits (1670), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query:    1 MASKFTMVDPAQGDDVYQHMAQTVNDRMGKAVEELRQKNDERTAASQSGASMPDEDTSVDGPTGSAYRQVEARKRAQQHRAQARIRKSKEQAVDAARQEEIVQKLQESHLLSDEEDDEAEDSLDPEFKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEERLQGFEGLADGQPKGEEDEFPTARVAARLGKLEAIDYTAPPTLDELRRFHLSQHAAIRGGTATTCDDDEDLDGCLSD 315
            MASKFTMVDPAQGDDVYQHMAQTVNDRMGKAVEELRQKNDERTAASQSGASMPDEDTSVDGPTGSAYRQVEARKRAQQHRAQARIRKSKEQAVDAARQEEIVQKLQESHLLSDEEDDEAEDSLDPEFKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEERLQGFEGLADGQPKGEEDEFPTARVAARLGKLEAIDYTAPPTLDELRRFHLSQHAAIRGGTATTCDDDEDLDGCLSD
Sbjct:    1 MASKFTMVDPAQGDDVYQHMAQTVNDRMGKAVEELRQKNDERTAASQSGASMPDEDTSVDGPTGSAYRQVEARKRAQQHRAQARIRKSKEQAVDAARQEEIVQKLQESHLLSDEEDDEAEDSLDPEFKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEERLQGFEGLADGQPKGEEDEFPTARVAARLGKLEAIDYTAPPTLDELRRFHLSQHAAIRGGTATTCDDDEDLDGCLSD 315          
BLAST of EWM26185.1 vs. NCBI_GenBank
Match: gi|298712639|emb|CBJ48664.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 215.312 bits (547), Expect = 1.201e-64
Identity = 135/295 (45.76%), Postives = 172/295 (58.31%), Query Frame = 0
Query:    7 MVDPAQGDDVYQHM----AQTVNDRMGKAVEELRQKNDERTAASQSGASMPDEDTSVDGPTGSAYRQVEARKRAQQHRAQARIRKSKEQAVDAARQE--EIVQKLQESHLLSDEEDDE-------------------AEDSLDPEFKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEERLQGFEGLADGQPKGEEDEFPTARVAARLGKLEAIDYT 276
            MVDP   D+  + M    A  VNDRMG+AV EL+ K  E+       AS    D     PTG+AY    A+ R Q+ + +  IR  +  A  A R+E  E+  +++ S  L+ E D E                   A    DPE   IRE RL ELK  H+ + +N++KGHGQYREI QDEFLPEVT S +V+VHFYHKDF RCK+MD  L  LAP H+ETKFL+I+AEKAPFFV KL VKILPTVI F D +A   + GF+GL  G P  + DE+P + +A  L   +AI Y+
Sbjct:    1 MVDPLGADEEEKSMQEMVANEVNDRMGRAVGELKDKY-EKGGKGYDAAS----DAQ---PTGAAY----AQAREQEKQRKKAIRDQRRAAEAATREEDAELAAQMKASARLNGEVDSEDEDGGDGGSDDVDSDDELLAGLDADPEICRIRESRLRELKRVHEARAENIAKGHGQYREIVQDEFLPEVTSSEKVVVHFYHKDFQRCKVMDMRLGELAPRHLETKFLRIDAEKAPFFVQKLQVKILPTVICFIDGVAVHNIIGFDGLTAGLPPDKLDEWPLSNLARELALAKAIIYS 283          
BLAST of EWM26185.1 vs. NCBI_GenBank
Match: gi|553186943|ref|XP_005854521.1| (thioredoxin-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294538|gb|EKU21838.1| thioredoxin-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 191.045 bits (484), Expect = 4.085e-58
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0
Query:  177 HFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEERLQGFEGLADGQPKGEEDEFPTARVAAR 266
            HFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEERLQGFEGLADGQPKGEEDEFPTARVAAR
Sbjct:    1 HFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEERLQGFEGLADGQPKGEEDEFPTARVAAR 90          
BLAST of EWM26185.1 vs. NCBI_GenBank
Match: gi|698803526|ref|XP_009834792.1| (hypothetical protein H257_10054 [Aphanomyces astaci] >gi|574110161|gb|ETV75661.1| hypothetical protein H257_10054 [Aphanomyces astaci])

HSP 1 Score: 194.897 bits (494), Expect = 6.997e-57
Identity = 91/153 (59.48%), Postives = 116/153 (75.82%), Query Frame = 0
Query:  125 PEFKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEE-RLQGFEGLADGQPKGEEDEFPTARVAARLGKLEAIDYT 276
            P+F  +RE RL +L+ Q++ K +N++KGHG YREI QDEFL EVT S RVLVHFYH+DF RCK+MD HL  +A  HVE K LKI+AEKAPFFV KL V++LPT+I F++ IA + R+ GFEGLAD  P G EDEFPT  +A RL K+ A++ +
Sbjct:  108 PDFMRLREVRLKQLQEQYKLKAENLAKGHGDYREILQDEFLKEVTSSARVLVHFYHRDFERCKVMDMHLGRIAKRHVEVKVLKIDAEKAPFFVAKLVVRVLPTIILFENGIANDTRVVGFEGLADDLPLGREDEFPTVNLARRLAKMGALNSS 260          
BLAST of EWM26185.1 vs. NCBI_GenBank
Match: gi|673021762|ref|XP_008864842.1| (hypothetical protein H310_02925 [Aphanomyces invadans] >gi|574479773|gb|ETW06767.1| hypothetical protein H310_02925 [Aphanomyces invadans])

HSP 1 Score: 189.504 bits (480), Expect = 6.121e-55
Identity = 89/149 (59.73%), Postives = 113/149 (75.84%), Query Frame = 0
Query:  127 FKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIA-EERLQGFEGLADGQPKGEEDEFPTARVAARLGKLEAID 274
            F  +RE RL +L+ Q++ K +N++KGHG YREI QDEFL EVT S RVLVHFYH+DF RCKI+D HL   A  HVE K LKI+AEKAPFF+ KL V++LPT+IFF++ IA ++R+ GFEGL D  P G EDEFPT  +A RL K+ A++
Sbjct:  107 FIRLREIRLKQLQEQYKLKAENLAKGHGDYREIVQDEFLKEVTSSARVLVHFYHRDFERCKIIDMHLGRFAKRHVEVKVLKIDAEKAPFFISKLVVRVLPTIIFFENGIANDDRIVGFEGLTDDVPLGHEDEFPTVNLARRLAKIGALN 255          
BLAST of EWM26185.1 vs. NCBI_GenBank
Match: gi|1173949340|gb|OQR97390.1| (thioredoxin [Thraustotheca clavata])

HSP 1 Score: 189.119 bits (479), Expect = 6.762e-55
Identity = 124/309 (40.13%), Postives = 182/309 (58.90%), Query Frame = 0
Query:    1 MASKFTMVDPAQGDDVYQHMAQTVNDRMGKAVEELRQKNDERTAASQSGASMPDEDTSVDGPTGSAYRQVEARKRAQQHRAQARIRKSKEQAVDAARQEEIVQKLQESHLLSDEEDDEAEDSLDPEFKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIA-EERLQGFEGLADGQPKGEEDEFPTARVAARLGKLEAIDYTAPPTLDELRRFHL-SQHAAIRGGTATTCDDDE 307
            MASKF+MV  +       H+     DRMG A+E+L+ + +      Q  A + ++            +Q+ A   AQ+        K   + V     E   ++LQ+ +   D++ ++  +      +L RE RL +L+ Q++ K +N++KGHG YREITQDEFL EVT S RV+VHFYH+DF RCK++D HL+ +A  H+E KFLK++AEKAPFFV KL V++LPT+I+FK+ IA ++R+ GFE L  G   G+EDEFPT  +A RL K+ AID       DEL   +  ++ ++I+ G  T  D DE
Sbjct:    1 MASKFSMVGGSGLFGAEDHL--EAQDRMGAAMEQLKIREEHEKQQRQV-AQIEEQ------------KQLLATLDAQE-------TKFINETVKPEHYEN--EQLQKKNEEDDDDFEDDFEEDAEFLRL-RELRLKQLQEQYRVKQENLAKGHGDYREITQDEFLKEVTSSVRVVVHFYHRDFERCKVIDMHLSKIAKRHIECKFLKLDAEKAPFFVNKLVVRVLPTIIYFKEGIASDDRIIGFEELTQGVGVGKEDEFPTVNLARRLAKIGAIDGAG----DELESLNYEAKKSSIQVGYHTEYDSDE 280          
BLAST of EWM26185.1 vs. NCBI_GenBank
Match: gi|698803528|ref|XP_009834793.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574110162|gb|ETV75662.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 185.267 bits (469), Expect = 8.620e-54
Identity = 87/140 (62.14%), Postives = 107/140 (76.43%), Query Frame = 0
Query:  125 PEFKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIAEE-RLQGFEGLADGQPKGEEDEFPTARV 263
            P+F  +RE RL +L+ Q++ K +N++KGHG YREI QDEFL EVT S RVLVHFYH+DF RCK+MD HL  +A  HVE K LKI+AEKAPFFV KL V++LPT+I F++ IA + R+ GFEGLAD  P G EDEFPT  V
Sbjct:  108 PDFMRLREVRLKQLQEQYKLKAENLAKGHGDYREILQDEFLKEVTSSARVLVHFYHRDFERCKVMDMHLGRIAKRHVEVKVLKIDAEKAPFFVAKLVVRVLPTIILFENGIANDTRVVGFEGLADDLPLGREDEFPTVNV 247          
BLAST of EWM26185.1 vs. NCBI_GenBank
Match: gi|669147880|ref|XP_008609502.1| (hypothetical protein SDRG_05557 [Saprolegnia diclina VS20] >gi|530739098|gb|EQC37340.1| hypothetical protein SDRG_05557 [Saprolegnia diclina VS20])

HSP 1 Score: 186.037 bits (471), Expect = 1.202e-53
Identity = 114/280 (40.71%), Postives = 159/280 (56.79%), Query Frame = 0
Query:    1 MASKFTMVDPAQGDDVYQHMAQTVNDRMGKAVEELRQKNDERTAASQSGASMPDED--TSVDGPTGSAYRQV---EARKRAQQHRAQARIRKSKEQAVDAARQEEIVQKLQESHLLSDEEDDEAEDSLDPEFKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIA-EERLQGFEGLADGQPKGEEDEFPTARVAARLGKLEAID 274
            MASKF+MV  +       H+     DRMG A+E+L+ + +      Q       +   +++D       R+    E  +   QH  +    +  +   D    +    +L+E                      +R ++L E   Q++ K +N++KGHG YREI QDEFL EVT S RV+VHFYH+DF RCK++D H+A +A  H+E KFLK+NAEKAPFFV KL V++LPTVI+FKD IA ++R+ GFEGLADG   G+EDEFPT  +A RL K+ AID
Sbjct:    1 MASKFSMVGGSGLFGAEDHL--EAQDRMGAAMEQLKVREEHEKQQRQVAKVAEQQQLLSNLDAQETQFIRETVKPEHYENDSQHAQKTSAEEDDDDFEDDFEDDPDFLRLRE----------------------LRMKQLQE---QYRVKQENLAKGHGDYREIVQDEFLKEVTSSPRVVVHFYHRDFERCKVIDMHMAKIAKRHIECKFLKLNAEKAPFFVTKLVVRVLPTVIYFKDGIASDDRVVGFEGLADGLRAGKEDEFPTVNLARRLAKIGAID 253          
BLAST of EWM26185.1 vs. NCBI_GenBank
Match: gi|675196189|ref|XP_008906979.1| (hypothetical protein PPTG_13030 [Phytophthora parasitica INRA-310] >gi|566021369|gb|ETI44280.1| hypothetical protein F443_11019 [Phytophthora parasitica P1569] >gi|567958704|gb|ETK84290.1| hypothetical protein L915_10735 [Phytophthora parasitica] >gi|567987422|gb|ETL37726.1| hypothetical protein L916_10630 [Phytophthora parasitica] >gi|568016697|gb|ETL90874.1| hypothetical protein L917_10530 [Phytophthora parasitica] >gi|568047074|gb|ETM44171.1| hypothetical protein L914_10571 [Phytophthora parasitica] >gi|568092893|gb|ETN07694.1| hypothetical protein PPTG_13030 [Phytophthora parasitica INRA-310] >gi|570324984|gb|ETO72932.1| hypothetical protein F444_11085 [Phytophthora parasitica P1976] >gi|570948835|gb|ETP14092.1| hypothetical protein F441_10939 [Phytophthora parasitica CJ01A1] >gi|570981832|gb|ETP42159.1| hypothetical protein F442_10911 [Phytophthora parasitica P10297])

HSP 1 Score: 182.956 bits (463), Expect = 1.442e-52
Identity = 124/290 (42.76%), Postives = 167/290 (57.59%), Query Frame = 0
Query:    1 MASKFTMVDPAQGDDVYQHMAQTVNDRMGKAVEELRQKND--ERTAASQSGASMPDEDTSVDGPTGSAYRQVEARKRAQQHRAQARIRKSKEQAVDAARQEEIVQKLQESHLLSDEEDDEAEDSLDPEFKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIA-EERLQGFEGLADGQPKGE--------------EDEFPTARVAARLGKLEAI 273
            MA+KF+M + +   D   H+    +DRM  A+EEL+ KN+  E+  A Q      +E            R+VE          +A   K+ +Q  D +    I  K  E  L SD+E   AE   DPE + IR  RL +LK + +EK   M+KGHG+YREITQDEFL EVTGS  V VHFYH+DF RCKIMD H++ LA +H+E KFLK+NAEKAPFFV KL +++LPTV+ FKD +A  ER+ GF+GL +   + E               D FPTA +A ++ ++ AI
Sbjct:    1 MAAKFSMANTSGLFDSAAHV--EASDRMQGAMEELKVKNERQEKIRAQQQEQQEKEEKQRA--------RRVE----------EALAAKALQQKEDGSY---IKGKQTEEELDSDDEAMLAELDEDPELERIRAARLKQLKHEFEEKQSLMAKGHGEYREITQDEFLKEVTGSPLVAVHFYHRDFERCKIMDMHMSKLARSHIECKFLKLNAEKAPFFVEKLVIRVLPTVVCFKDGVAFPERVIGFDGLTEDDEEAELANFGSRANHHATSSDNFPTAALARKMVEIGAI 267          
BLAST of EWM26185.1 vs. NCBI_GenBank
Match: gi|953486659|emb|CEG48721.1| (thioredoxin-like protein [Plasmopara halstedii])

HSP 1 Score: 181.8 bits (460), Expect = 3.663e-52
Identity = 114/290 (39.31%), Postives = 164/290 (56.55%), Query Frame = 0
Query:    1 MASKFTMVDPAQGDDVYQHMAQTVNDRMGKAVEELRQKND--ERTAASQSGASMPDEDTSVDGPTGSAYRQVEARKRAQQHRAQARIRKSKEQAVDAARQEEIVQKLQESHLLSDEEDDEAEDSLD--PEFKLIRERRLAELKAQHQEKVDNMSKGHGQYREITQDEFLPEVTGSRRVLVHFYHKDFMRCKIMDKHLASLAPTHVETKFLKINAEKAPFFVGKLHVKILPTVIFFKDSIA-EERLQGFEGLADGQPKGE------------EDEFPTARVAARLGKLEAI 273
            MA+KFTMV+ +   D   H+    +DRM  A+EEL+ KN+  E   A Q      +E   + G   +   +   +K     R+  R ++ KE                    +SD +D+E  + LD  PE + IR  RL +LK +++E+   ++KGHG++REI+QDEFL EVT S  V VHFYH+DF RCKIMD HLA LA +H+E KFLK++AEKAPFF  KL +++LP+++ F+D +A  ER+ GFEGL     K E             D FPTA +A ++ ++  I
Sbjct:    1 MAAKFTMVNTSGLFDPAAHV--EASDRMQNAMEELKLKNEQQETIRAQQKDKQEKEEKQRIKGIEEALAAKAAEQK---TDRSYVRDKQLKE--------------------ISDSDDEEMLNQLDDDPELERIRTARLKQLKNEYEEQQILLAKGHGEFREISQDEFLKEVTSSPLVAVHFYHRDFERCKIMDMHLAKLARSHIECKFLKLDAEKAPFFAKKLMIRVLPSIVCFRDGVAFSERIIGFEGLTSDDEKAEASNFGSRKTAHANDNFPTAALARKMVEIGVI 265          
The following BLAST results are available for this feature:
BLAST of EWM26185.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108182|gb|EWM26185.1|0.000e+0100.00thioredoxin domain-containing protein 9 [Nannochlo... [more]
gi|298712639|emb|CBJ48664.1|1.201e-6445.76conserved unknown protein [Ectocarpus siliculosus][more]
gi|553186943|ref|XP_005854521.1|4.085e-58100.00thioredoxin-like protein, partial [Nannochloropsis... [more]
gi|698803526|ref|XP_009834792.1|6.997e-5759.48hypothetical protein H257_10054 [Aphanomyces astac... [more]
gi|673021762|ref|XP_008864842.1|6.121e-5559.73hypothetical protein H310_02925 [Aphanomyces invad... [more]
gi|1173949340|gb|OQR97390.1|6.762e-5540.13thioredoxin [Thraustotheca clavata][more]
gi|698803528|ref|XP_009834793.1|8.620e-5462.14hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|669147880|ref|XP_008609502.1|1.202e-5340.71hypothetical protein SDRG_05557 [Saprolegnia dicli... [more]
gi|675196189|ref|XP_008906979.1|1.442e-5242.76hypothetical protein PPTG_13030 [Phytophthora para... [more]
gi|953486659|emb|CEG48721.1|3.663e-5239.31thioredoxin-like protein [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4491rna4491Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications