rna4488, rna4488 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4488
Unique Name	rna4488
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2114
Alignment location	CM002463.1:716688..718982 -

Link to JBrowse

Properties


Property Name	Value
Product	Pheophorbide a oxygenase
Orig transcript id	gnl\|cribi\|Naga_100072g25.8021.mrna
Orig protein id	gnl\|cribi\|Naga_100072g25.8021
Gene	PAO2
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:716688..718982 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PAO2	gene4330	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26188.1	cds4477	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4488	rna4488-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:716688..718982-
coding sequence from alignment at CM002463.1:716688..718982-

mRNA sequence

>rna4488 ID=rna4488|Name=rna4488|organism=Nannochloropsis gaditana|type=mRNA|length=2114bp
TGGGGGATGCGTGAGGCATCAACACGGCAAAGACATGATTTGCGGCCTCC
CTCAGAGGTCGTGTCTCGGCGAGCAAGAACACCGCGAGCCATGCCCGGAG
ATCAACTCGTAGAGTGACGACTGTCTGCACCACTCATATCTCCTCACGGA
GATCTCCTCCAACACACGAGCGGTCCAACCGGAAAGTTAAAGACGTGCGC
GCAATCTTTTGACCAATTTTTCCGTAGCGGATCATCTGCAACAGGCAGCA
TCGACCAAGTCGAAGGCCGGAAGTAACCTCCCCCCCCTTTTACCGCCCCG
TCCTGCTCTTCTAGCCCACTACGTTCTGGCATACGGTGGGTAGGCTCCAT
CAACACTATGCCCTTCAAGAAATATGTGGCTGTTATCGGTAGCAGCGGCG
GGGGCGGAGCAAGTCATGCGGGAAGTGACGTCTACGGGCTCTTAATTGCA
TTGCGACAGGAGCTGGCACAGTGCGAAGTTGGTATTGCCGTTGCACAGCT
CGTGGATTGCAGCACGCCTCTGGACTTCGCGGCCTCCCAGACACCGACAG
TCCTATGGACGTTCAATACTGAGACGAATCAGGTCGAACGAAGCTATGAG
GGTACCCTCGAGGCGGTCAATGAGCGGGCGCAATTGATGGATCGGGCCAT
CAGCCGGATGATCATCGGCGACGAGAAGCAGCGGGTCGATGGCCTCATCA
GCATCAGTGCGGACCCCGAGGCTGTCAATCAATTCACTTTCCTTGCCGCG
GCCAAGGCTAAGATTCCTGTCGTCGGCACTGGTGGCACTTCGTTGGGTAA
AGCCGCGGGCGACTTGGGCTGTGATGTTGTGGGCAACAGCGGCGGGTCCG
TCTCAACAACGATAGAGACGAAAGCCTTGTCGTTCACAGCCAGTCTAGCC
AGCTTCTGGGGCCTTCCCTACGACCCATTGATTTCTTATCCACAGCTTCA
CAGTATCCTGGCCGCGTGTCTCCCGGTTTTCGTGGCGGTAGTCCTGGCCA
AGGAAGCTTGGAGGAAGGCTCTGGCGCTGGGTATCTCGGATTGGTGGCTG
GCACGTCAGACTCACGCCACCTTCACAGGGCTGTCGGACATCGCGAATGC
CTTGCCAGTGGTAGTGGCGGTGGTGACGGCCTCTCAAGTGGGAAGACTGG
GAGAGGCCGGGCTCTTGTCGGGGGTATTGGCGGGCATGCTCGCCTGTGGC
GCGGGAGGGAGCGAGGAGGGTACCGGGTCTGAGAGCACCGTGCTTGCCGG
AGCCCTTACGGGCTTGTTGGCAGGATGGCTGAGTCGGCAGCTTTTGGTTG
CCACGGCAAAGTCCCTGTGGGTGCCAGCCACGGCATCTTCCATCATAACA
GCCGGGGCAGCGGGGCTATCTGCTGGGCTGGGGGGTAGATTACTCATTCG
ACGGCCATGCGCCTGGGTCTCGGACACATTCCGAAGCATTCTTCTGTACT
TGGAAGCTCCTGTGGTCGTGGGAAACGATGCAGGCGGGGGACGTGGTGGC
GTGGCGGGAATCAGCGCCTTTCAGTGGGCGCTCGCCCTGGCCGTGGGTCC
CGGGGTGACCTACGGCTCCCAAAGGGGTCTTTATCACGTCGTACTCCTCC
CGCTCATCCTCTTTGAGATGGAGCGCGGAGATCCCTCCTTCTTGGGGGCG
GTGGATTACTGCTCGCTCTGTCTAGTGTCTGCGGGCGTGACGGTGGCGAC
CTGGCTCCTGCCCCTCCCTCCCGACCACCCCAGCAACGGGGGCCGGGACC
CGCGTCCCCTGGCAAGACGGGGGGCCTACACGAACTTGGTGTGGGGCGAC
TTCGTGGAGGCTTGCTATCCACTCGTCCAGCACAGCGTCTTCTTGACCGG
GGCGGTGTACGCGGCGTCAACCCTGTCTACGGCCGTGCTTCTGCAGGAAG
GGGGAAGGTCGTCCGCTTACATGCCGGCGCCTCTGAGTCTGTGGCTGGCC
TCTCACGTCGAAGAAGGGGAGGGAAGCGCATGGCGAGCTTCGTTGATAGC
GTTTGGGCTGCCGTTTTCGGCGACGCTGTTGCGGAACGGATGGCATCGCT
TCGGGGGTTGGGAGTAAGCGGCTTGCTGATGTATGGAAAGCAACGGATGT
TCATTTTACGCACC

protein sequence of rna4488

>rna4488-protein ID=rna4488-protein|Name=rna4488|organism=Nannochloropsis gaditana|type=polypeptide|length=555bp
MACFMFLRLLVVVGTIASPITAFFTSSGSPLFRCVLPAKTSPPQPPHAVG
PFATVAQPAPTPVSPMPPSSTTSSSSLTNAPSSSGSLQPLGPGHGSGAPI
DWWRQWYPMAFLDDLDPARPTQVELLGKLFVIWADHDKTWHAFEDQCPHR
LAPLSEGRIDERGNLQCAYHGWSFSGQGGCVNIPQAEPEIKAVAERSGRA
CAKAVPLLVAQGMVWLWPDNSPDGMEASRSQLPSTVPELHDPAFIRGAWV
TRDLMYGYDTLVENVVDPAHVPFAHHGVQAQRSMAMPLNVSLNYVGKEGV
FLSLPRLANSTIEFHAPTRLHYLFDFTGFFQRVPLMKWAFRLEKWLRRLP
PDTRPRSSLVTYTIPVGPGRSRILALFPRNFFAINKPRWLDHLERNAVLD
GDLVFLHGQEREMRRPELKWEENIDRAFYMPTKSDEGVRAFRQWLVRWGA
GGPRWADGVDSALPPRSNDRHFLMDRYTQHTTQCSACRGALRNIRVLKGV
TAAMSLVCMTAIWTPRPASVLGKILGAGVAMAFGSWQMARLEKRMLFIDY
VHAHK

mRNA from alignment at CM002463.1:716688..718982-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4488 ID=rna4488|Name=rna4488|organism=Nannochloropsis gaditana|type=mRNA|length=2295bp|location=Sequence derived from alignment at CM002463.1:716688..718982- (Nannochloropsis gaditana)
CCCCCGGCGATAAAGAAGACCTGACGATACGAACACGCAAGCGAGGTCAT
TCCCATAGGGGTTTCATTCTTTGTCTTTTGCTTGTAACTCGTAGCTCTTC
TCACTGTGGTCCGTACTATTGATTCGACAGGCAGTCGATTAACAGAAAAT
TTACCTCGCCTCGCCTTGAGACACGGACAACGCAGAAGAGAACAGGCAAC
TACCTCGTCGTCCTCATTTCCTGACCTGAGCAACCTTATACCTTTGCAGC
ATGGCGTGCTTCATGTTTCTGCGTCTTCTTGTGGTCGTTGGTACAATCGC
CTCACCCATCACAGCATTTTTTACGTCCTCGGGTAGTCCACTTTTCCGAT
GCGTGTTGCCTGCCAAGACATCACCACCCCAACCTCCCCACGCTGTCGGA
CCTTTTGCCACAGTCGCGCAACCTGCACCCACGCCTGTTTCCCCGATGCC
TCCTTCATCGACCACCTCATCATCATCCCTCACAAACGCGCCGTCCTCGT
CTGGGTCCTTGCAACCGCTTGGCCCCGGTCACGGCAGTGGGGCTCCGATC
GACTGGTGGCGACAGTGGTACCCGATGGCCTTCCTCGACGACTTGGATCC
TGCCCGCCCCACGCAGGTCGAACTGTTAGGCAAGCTCTTCGTAATATGGG
CGGACCATGACAAGACGTGGCACGCCTTCGAGGACCAATGTCCCCACCGC
CTCGCGCCCCTCTCAGAAGGCCGCATCGACGAGCGCGGAAACTTGCAATG
CGCTTACCATGGCTGGTCATTCAGTGGGCAAGGGGGCTGCGTGAATATCC
CGCAAGCCGAGCCGGAGATCAAGGCAGTCGCTGAGCGCTCGGGTCGGGCC
TGCGCCAAGGCAGTACCGCTCTTGGTGGCTCAGGGAATGGTGTGGCTGTG
GCCAGACAACTCGCCCGACGGCATGGAGGCATCTCGGAGCCAGCTTCCCA
GCACGGTGCCGGAGCTGCACGACCCGGCCTTCATCCGCGGGGCCTGGGTG
ACCCGCGACCTCATGTACGGGTACGACACGCTGGTGGAGAACGTGGTGGA
CCCGGCCCATGTTCCCTTCGCCCACCACGGCGTGCAAGCCCAGCGGAGCA
TGGCTATGCCCCTCAATGTGTCTCTGAACTACGTGGGCAAGGAGGGCGTT
TTCCTAAGCTTGCCTCGACTGGCGAACAGCACGATTGAATTCCATGCGCC
CACGCGTCTCCACTACCTGTTCGATTTCACCGGCTTCTTCCAGCGCGTCC
CCCTGATGAAGTGGGCCTTTCGCTTGGAGAAATGGCTGCGTCGACTCCCC
CCAGACACACGCCCTCGCTCCTCGTTGGTCACGTACACAATTCCAGTTGG
GCCCGGGCGCTCGCGCATCCTGGCCTTGTTTCCCCGAAATTTCTTCGCGA
TCAACAAACCCCGCTGGCTGGACCACCTGGAGCGGAACGCGGTCCTGGAC
GGAGACTTAGTCTTCTTGCATGGACAGGAGCGGGAGATGCGGCGGCCGGA
GTTGAAGTGGGAGGAGAACATTGACCGGGCGTTCTACATGCCCACCAAGT
CGGATGAGGGCGTGCGCGCTTTCCGTCAGTGGCTTGTCCGGTGGGGTGCC
GGGGGCCCGAGGTGGGCGGATGGCGTCGACTCGGCCTTACCGCCGCGCAG
CAACGACCGGCACTTCCTTATGGACCGATACACCCAGCACACAACCCAGT
GCTCTGCCTGCCGGGGGGCCCTCCGGAATATCCGGGTATTGAAAGGCGTG
ACGGCGGCGATGAGCTTGGTCTGCATGACGGCCATCTGGACGCCGCGGCC
GGCGAGCGTGTTGGGGAAAATCTTGGGCGCCGGCGTCGCCATGGCCTTCG
GTTCATGGCAGATGGCACGCCTGGAGAAGCGCATGCTTTTCATAGACTAC
GTCCACGCGCATAAGTAAGGGCAACAAGGGGGGTGGTCCAGGAGGCTCGC
GTAGAGAGACGGGGCGGAGGCAATATGCCCGCGGTGGAGAACGTTGTGCT
TGTCGCCTGGGAGAGGAGAGGCCTCTCAGTGGCGGACAATGCGATGATAT
CGATAGGCGTTCGAAAGATGTACAGCAAACGGGAAGGGGAGAGGAAGGAG
GCCGTAAATGGAAAAGCGTGCATCGCTGCTGGATACGCAGCGTGCCGAGA
ACGGTTTCGGGGCGGCTTTTTGAGTGTAAACAAACGTGAATGACGTAAAA
AAAAGATTGTGGGGACTGATAGAAGGTACGAAAGCCAGCTCTGGTGCGTA
AAATGAACATCCGTTGCTTTCCATACATCAGCAAGCCGCTTACTC

Coding sequence (CDS) from alignment at CM002463.1:716688..718982-

>rna4488 ID=rna4488|Name=rna4488|organism=Nannochloropsis gaditana|type=CDS|length=1668bp|location=Sequence derived from alignment at CM002463.1:716688..718982- (Nannochloropsis gaditana)
ATGGCGTGCTTCATGTTTCTGCGTCTTCTTGTGGTCGTTGGTACAATCGC
CTCACCCATCACAGCATTTTTTACGTCCTCGGGTAGTCCACTTTTCCGAT
GCGTGTTGCCTGCCAAGACATCACCACCCCAACCTCCCCACGCTGTCGGA
CCTTTTGCCACAGTCGCGCAACCTGCACCCACGCCTGTTTCCCCGATGCC
TCCTTCATCGACCACCTCATCATCATCCCTCACAAACGCGCCGTCCTCGT
CTGGGTCCTTGCAACCGCTTGGCCCCGGTCACGGCAGTGGGGCTCCGATC
GACTGGTGGCGACAGTGGTACCCGATGGCCTTCCTCGACGACTTGGATCC
TGCCCGCCCCACGCAGGTCGAACTGTTAGGCAAGCTCTTCGTAATATGGG
CGGACCATGACAAGACGTGGCACGCCTTCGAGGACCAATGTCCCCACCGC
CTCGCGCCCCTCTCAGAAGGCCGCATCGACGAGCGCGGAAACTTGCAATG
CGCTTACCATGGCTGGTCATTCAGTGGGCAAGGGGGCTGCGTGAATATCC
CGCAAGCCGAGCCGGAGATCAAGGCAGTCGCTGAGCGCTCGGGTCGGGCC
TGCGCCAAGGCAGTACCGCTCTTGGTGGCTCAGGGAATGGTGTGGCTGTG
GCCAGACAACTCGCCCGACGGCATGGAGGCATCTCGGAGCCAGCTTCCCA
GCACGGTGCCGGAGCTGCACGACCCGGCCTTCATCCGCGGGGCCTGGGTG
ACCCGCGACCTCATGTACGGGTACGACACGCTGGTGGAGAACGTGGTGGA
CCCGGCCCATGTTCCCTTCGCCCACCACGGCGTGCAAGCCCAGCGGAGCA
TGGCTATGCCCCTCAATGTGTCTCTGAACTACGTGGGCAAGGAGGGCGTT
TTCCTAAGCTTGCCTCGACTGGCGAACAGCACGATTGAATTCCATGCGCC
CACGCGTCTCCACTACCTGTTCGATTTCACCGGCTTCTTCCAGCGCGTCC
CCCTGATGAAGTGGGCCTTTCGCTTGGAGAAATGGCTGCGTCGACTCCCC
CCAGACACACGCCCTCGCTCCTCGTTGGTCACGTACACAATTCCAGTTGG
GCCCGGGCGCTCGCGCATCCTGGCCTTGTTTCCCCGAAATTTCTTCGCGA
TCAACAAACCCCGCTGGCTGGACCACCTGGAGCGGAACGCGGTCCTGGAC
GGAGACTTAGTCTTCTTGCATGGACAGGAGCGGGAGATGCGGCGGCCGGA
GTTGAAGTGGGAGGAGAACATTGACCGGGCGTTCTACATGCCCACCAAGT
CGGATGAGGGCGTGCGCGCTTTCCGTCAGTGGCTTGTCCGGTGGGGTGCC
GGGGGCCCGAGGTGGGCGGATGGCGTCGACTCGGCCTTACCGCCGCGCAG
CAACGACCGGCACTTCCTTATGGACCGATACACCCAGCACACAACCCAGT
GCTCTGCCTGCCGGGGGGCCCTCCGGAATATCCGGGTATTGAAAGGCGTG
ACGGCGGCGATGAGCTTGGTCTGCATGACGGCCATCTGGACGCCGCGGCC
GGCGAGCGTGTTGGGGAAAATCTTGGGCGCCGGCGTCGCCATGGCCTTCG
GTTCATGGCAGATGGCACGCCTGGAGAAGCGCATGCTTTTCATAGACTAC
GTCCACGCGCATAAGTAA

Synonyms

Publications