EWM26252.1, cds4451 (CDS) Nannochloropsis gaditana

Overview
NameEWM26252.1
Unique Namecds4451
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:648674..649090 +
Alignment locationCM002463.1:649280..649498 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26252.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100025g27.7543.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:648674..649090 +
CM002463.1supercontigCM002463.1:649280..649498 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26252.1 vs. NCBI_GenBank
Match: gi|585108251|gb|EWM26252.1| (hypothetical protein Naga_100025g27 [Nannochloropsis gaditana])

HSP 1 Score: 431.409 bits (1108), Expect = 6.389e-153
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query:    1 MRFSGLFLALLLTCASTALAFVVRPAYQVSQLRRIRGVMTAGLFDGLFLSDSEKEEAYQKQQEILRARQNPDKQKAYFQEVNKRRAEANKNYKEKFNLSKNGKQDPAIKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGKASKPTMLPQGLDSDGPNSKKGAKGGNKK 211
            MRFSGLFLALLLTCASTALAFVVRPAYQVSQLRRIRGVMTAGLFDGLFLSDSEKEEAYQKQQEILRARQNPDKQKAYFQEVNKRRAEANKNYKEKFNLSKNGKQDPAIKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGKASKPTMLPQGLDSDGPNSKKGAKGGNKK
Sbjct:    1 MRFSGLFLALLLTCASTALAFVVRPAYQVSQLRRIRGVMTAGLFDGLFLSDSEKEEAYQKQQEILRARQNPDKQKAYFQEVNKRRAEANKNYKEKFNLSKNGKQDPAIKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGKASKPTMLPQGLDSDGPNSKKGAKGGNKK 211          
BLAST of EWM26252.1 vs. NCBI_GenBank
Match: gi|544210603|ref|XP_005535702.1| (hypothetical protein CYME_CMF025C [Cyanidioschyzon merolae strain 10D] >gi|449016014|dbj|BAM79416.1| hypothetical protein CYME_CMF025C [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 92.0485 bits (227), Expect = 1.980e-19
Identity = 67/192 (34.90%), Postives = 91/192 (47.40%), Query Frame = 0
Query:   12 LTCASTALAFVVRPAYQVSQLRRIRGV---MTAGLFDGL--FLSDSEKEEAYQKQQEILRARQNPDKQKAYFQEVNKRRA--------EANKNYKEKFNLSKNGK--QDPAIKWMELRKKGVIGEREKYEQYGE-TNRGIIIPQVPFGNTKYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGKASKP 187
            L C   A    + P     +  R R     + AGLFD       D E + A  KQ E  R R+  ++Q+   +++  RRA        E  +  +E+ N  +  K  +DP I W   R+K       K   YGE   RGII+P   FG  ++D GERFDLRLPYVD+GYVDE A +   +     FG+  KP
Sbjct:   18 LDCRWQARGACLAPGRHWRRAPRTRATSRAVIAGLFDAFKPLFGDGENDRAQNKQLESQREREIAEQQRIMREKLEARRAGRHLEGVAERRQAVQEQLNAKEKPKPGEDPLIAWERQREKERTAGTWKEVGYGEEPKRGIILPWPSFGIPRFDYGERFDLRLPYVDEGYVDEDADIMGKV-----FGRRRKP 204          
BLAST of EWM26252.1 vs. NCBI_GenBank
Match: gi|219117269|ref|XP_002179429.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409320|gb|EEC49252.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 87.8113 bits (216), Expect = 6.844e-18
Identity = 71/202 (35.15%), Postives = 97/202 (48.02%), Query Frame = 0
Query:    1 MRFSGLFLALLLTCASTALAFVVRPAYQVSQLRRIRGVMTAGLFDGLFLSDSEKE---EAYQKQQEILRARQNPDKQK-AYFQEVNKRRAEANKNYKEKFNL---SKNGKQDPAIKWMELRKKGVIGEREKYEQYGETNR--GIIIPQVPFGNT-------KYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGKASK 186
            MR+S   L +      T  AFV  PA            +  GLFD      S K+   E ++KQQEIL  R+ P  ++  YF++V +RR +A+   K+ +     S +  +DP  +W + R  G I + E   QYG+  +  GI IP   FG         K+D G RFDLRLPY D GYVD+ A +   I   FG G   K
Sbjct:    1 MRYSSFLLVVAFHVTCTG-AFVT-PANAAKST-----ALPMGLFDDWRAGGSGKDSLDEEWEKQQEILAERRKPKAERDKYFEKVEQRRQQASAKQKDMWAWQTKSYSKGEDPIDEWKKRRADGTISDLEN--QYGDPKKIGGIPIPGASFGVGGEFGVGGKFDNGGRFDLRLPYADQGYVDDDADVMGKISAFFGGGTKKK 193          
BLAST of EWM26252.1 vs. NCBI_GenBank
Match: gi|873221004|emb|CEM34457.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 85.8853 bits (211), Expect = 7.310e-17
Identity = 50/124 (40.32%), Postives = 73/124 (58.87%), Query Frame = 0
Query:   51 DSEKEEAYQKQQEILRARQNPDKQKAYFQEVNKRRAEANK-------NYKEKF-NLSKNGKQDPAIKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDDGYVD 166
            D  K E ++KQQEIL+ R+NP+K K Y+ ++  RRA+A+K        + E+    +   KQ     W   R++G+IG +     Y E  R I +P  PFG  KYD+GERFDLR P+V+ G+V+
Sbjct:   44 DPVKAERFKKQQEILQRRRNPEKLKEYYSDLADRRAKASKLEILKKQAWAERPGETAAQRKQRIEATWESFREQGLIG-KPGTSTYEEPERSIPLPVAPFGLEKYDQGERFDLRSPWVESGWVN 166          
BLAST of EWM26252.1 vs. NCBI_GenBank
Match: gi|545364270|ref|XP_005647199.1| (hypothetical protein COCSUDRAFT_63797 [Coccomyxa subellipsoidea C-169] >gi|384249173|gb|EIE22655.1| hypothetical protein COCSUDRAFT_63797 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 82.4185 bits (202), Expect = 2.227e-16
Identity = 57/159 (35.85%), Postives = 80/159 (50.31%), Query Frame = 0
Query:   53 EKEEAYQKQQEILRARQNPDKQKAYFQEVNKRRAEANK-----NYKEKFNLSKNGKQDPAIKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGKASKPTMLPQGLDSDGPNSKKGAK 206
            EKE+AY+ QQ++LR R    ++ ++ ++VN RRA+  K      YK+K +  K  +               + ER         N  IIIP  PFG  +YD+GERFDL+  Y D+G+VDE A  G  +KR FG GK             +GP  K+G K
Sbjct:   18 EKEDAYRAQQDVLRRR----REGSWQKDVNARRAKVKKYNTDPEYKKKIDEDKRAR--------------ALAERPPDPIVNAFN--IIIPLAPFGIPEYDQGERFDLKAKYCDNGWVDEEAEFGKQVKRFFGMGKKKSDDES-----EEGPTDKRGKK 151          
BLAST of EWM26252.1 vs. NCBI_GenBank
Match: gi|1072224555|gb|OEU09305.1| (hypothetical protein FRACYDRAFT_195476 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 82.0333 bits (201), Expect = 7.954e-16
Identity = 60/160 (37.50%), Postives = 82/160 (51.25%), Query Frame = 0
Query:   39 MTAGLFD----GLFLSDSEKEEAYQKQQEILRARQNPDKQK-AYFQEVNKRRAEANK----NYKEKFNLSKNGKQDPAIKWMELRKKGVIGEREKYEQYGETNR--GIIIPQVPFGNT-------KYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFG 180
            +  G+FD    G      E  + Y KQQ IL  R+ P  Q+  YFQ+V +RR  A+K    N+  +    K G +DP  +W + R  G IG+ E  +QYG+  +  GI +P   FG         K+D G RFDLRLPY D GYVDE + +   +   FG
Sbjct:   12 LQMGMFDNWRAGGTAGGDELNDEYAKQQRILEERRAPKSQRDKYFQKVEQRRQTADKERSDNWAWQTKTYKKG-EDPIDEWKKRRADGTIGDLE--DQYGDPKKIGGIPLPMASFGVGGEFGLGGKFDNGGRFDLRLPYADQGYVDEDSDVMGKLSGFFG 168          
BLAST of EWM26252.1 vs. NCBI_GenBank
Match: gi|1210513348|dbj|GAX27745.1| (hypothetical protein FisN_13Hh155 [Fistulifera solaris])

HSP 1 Score: 78.9518 bits (193), Expect = 1.545e-14
Identity = 59/168 (35.12%), Postives = 87/168 (51.79%), Query Frame = 0
Query:   38 VMTAGLFDGLFLSDSEKE---EAYQKQQEILRARQNPDKQKA-YFQEVNKRRAEANKNYKEKFNLSKNG---KQDPAIKWMELRKKGVIGEREKYEQYGETNR--GIIIPQVPFGNT-------KYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGKASKPTM 189
             +  GLFDG     S K+   E +++QQEILR R+ P  ++  YF +V +RRAEA    ++ +   K      +DP  +W + R  G I + +   QYG+  +  GI +P   FG         K+D G RFDLRLPY + GYVD+ + +   +   FG GK  K  +
Sbjct:   32 ALHMGLFDGFKGMGSGKDDLDEQWERQQEILRNRRKPQAEREQYFSKVAQRRAEATAKQEQMWAWQKKSYAKGEDPLDEWKKRRADGSISDLD--NQYGDPKKIGGIPLPMASFGVGGEFGVGGKFDNGGRFDLRLPYAEQGYVDDDSDVMGKLSSFFG-GKKEKKNL 196          
BLAST of EWM26252.1 vs. NCBI_GenBank
Match: gi|223999169|ref|XP_002289257.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974465|gb|EED92794.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 78.5666 bits (192), Expect = 1.753e-14
Identity = 66/194 (34.02%), Postives = 96/194 (49.48%), Query Frame = 0
Query:    8 LALLLTCASTALAFVVRPAYQ--VSQLRRIRGVMTAGLFDGLFLSDSEKEEAYQKQQEILRARQ-NPDKQKAYFQEVNKRRAEANKNYKEKFNLSKN---GKQDPAIKWMELRKKGVIGEREKYEQYGETNR--GIIIPQVPFGNT-------KYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGKASK 186
            + L     S+++AF    ++Q  VS L   +G   A   D          E ++KQQE+LR RQ +P++++ YF++V  RR +A +   +K+   K       DP  +W + R+ G I + E   QYG+     GI +P   FG         K+D G RFDLRLPY + G+VDE A   N     FG GK  K
Sbjct:    9 VVLCGIVVSSSVAFAPAKSFQSSVSALHFFKGGSGAKDLD----------EEWEKQQEMLRLRQASPEEREKYFKQVEDRRIKATEEQVDKWAWQKKQYAKGDDPINEWRKRRESGQISDLEN--QYGDPKEVGGIPMPMASFGVGGEFGVGGKFDNGGRFDLRLPYAEQGWVDEDADP-NPFANWFGGGKNKK 189          
BLAST of EWM26252.1 vs. NCBI_GenBank
Match: gi|1189392046|gb|OSX78965.1| (hypothetical protein BU14_0093s0008 [Porphyra umbilicalis])

HSP 1 Score: 75.485 bits (184), Expect = 8.716e-14
Identity = 48/134 (35.82%), Postives = 68/134 (50.75%), Query Frame = 0
Query:   50 SDSEKEEAYQKQQEILRARQNPDKQKAYFQEVNKRRAEANKNYKEKFNLSKNGKQDPAIKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGK 183
            S+ +++     Q+ +L  R++      Y  EV +RRA+   +++    L     +DP   W     +G+I     YE   E   GI +P   FG  KYD GERFDLRLP+V+ GY D  A +   I R FGFGK
Sbjct:    7 SEEQRQAEVDAQRAMLARRRDEKAAAKYMAEVEQRRADTEAHFQSN-KLDIQPGEDPIEAWRRKEARGLIKPL-GYEDVPEG--GIPMPMASFGIPKYDNGERFDLRLPHVEVGYEDPDADIMGKIGRFFGFGK 136          
BLAST of EWM26252.1 vs. NCBI_GenBank
Match: gi|298709067|emb|CBJ31016.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.6406 bits (187), Expect = 1.293e-13
Identity = 66/195 (33.85%), Postives = 94/195 (48.21%), Query Frame = 0
Query:    9 ALLLTCASTALA------FV------VRPAYQVSQLRRIRGVMTAGLFDGLFLSDSEKEEAYQKQQEILRARQNPDKQKAYFQEVNKRRAEAN-KNYKEKFNLSKNGKQDPAIKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNT-------KYDEGERFDLRLPYVDDGYVDESASLGNTIKRLFGFGK 183
            AL L   STA A      FV      +RP+ + +       +   GL        S+ +E ++ QQE+L+ R N      Y  +VN++RA+A+ K  K K+   K+   DP + W +++ +G I E   YE+      GI IP   FG         K+DEG RFDLRLPY D GYVD   +    I  +FG+ K
Sbjct:    5 ALALVATSTASAAQQQSCFVPSVGGGLRPSSKTTSSSMQMKLWDFGLNREAITGPSQVDENWKAQQEMLKRRNNKGAMDKYKSKVNEKRAQADAKANKWKWQTEKSS-FDPLVAWKKMKSEGKIDEV--YEEGENEEGGIPIPMASFGVGGSFGVGGKWDEGGRFDLRLPYADQGYVDPDEAPMKKIGSVFGWNK 196          
The following BLAST results are available for this feature:
BLAST of EWM26252.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108251|gb|EWM26252.1|6.389e-153100.00hypothetical protein Naga_100025g27 [Nannochlorops... [more]
gi|544210603|ref|XP_005535702.1|1.980e-1934.90hypothetical protein CYME_CMF025C [Cyanidioschyzon... [more]
gi|219117269|ref|XP_002179429.1|6.844e-1835.15predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|873221004|emb|CEM34457.1|7.310e-1740.32unnamed protein product [Vitrella brassicaformis C... [more]
gi|545364270|ref|XP_005647199.1|2.227e-1635.85hypothetical protein COCSUDRAFT_63797 [Coccomyxa s... [more]
gi|1072224555|gb|OEU09305.1|7.954e-1637.50hypothetical protein FRACYDRAFT_195476 [Fragilario... [more]
gi|1210513348|dbj|GAX27745.1|1.545e-1435.12hypothetical protein FisN_13Hh155 [Fistulifera sol... [more]
gi|223999169|ref|XP_002289257.1|1.753e-1434.02predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1189392046|gb|OSX78965.1|8.716e-1435.82hypothetical protein BU14_0093s0008 [Porphyra umbi... [more]
gi|298709067|emb|CBJ31016.1|1.293e-1333.85conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4462rna4462Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications