rna4462, rna4462 (mRNA) Nannochloropsis gaditana

Overview
Namerna4462
Unique Namerna4462
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1417
Alignment locationCM002463.1:647594..649622 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100025g27.7543.mrna
Orig protein idgnl|cribi|Naga_100025g27.7543
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:647594..649622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g27gene4304Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4462rna4462-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26252.1cds4451Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4462 ID=rna4462|Name=rna4462|organism=Nannochloropsis gaditana|type=mRNA|length=1417bp
GCGAATAGACGAGGGGAGTGTCATGTATTTCCACACGGAGCCGTCACAAG
AAATGGCGAGCTCCGCGAGTGGAGCGACGATGACATGACCAAGTCCGCTG
TGCTCTTGCTGGTTTTTGCCTCCCTCGAGCAGACATGCACGTCGTGGAAA
TATTCAACCCAGCCCTCTGACAAGATTTTCATGCCATTCCTAGGTGCGCG
CGGTTTATAGTCATGCAGGGCGAGGAGCTGTCCTGCCTATAGTGTGCTCG
TGAAGCGAGGGCAAGAGCAAAATGCATGTAAGCAAAATTTTATTTCTCCG
ATGCAAAGTCAAGCGTACCAAGAGAAAGGGAGGGTCAACAGCAGCTGTGG
GTGCCGTCCTTCGTCGTGCATGTGCATGACAGCAAGGGACGGGACGTCGT
GGGGGCCCTCTGAGAGTCTTTTTCGGATCCCCCAGCTTGCCCTAGTGCCT
GTCCACCTCCAAAAGTGAAGGCGACATCATAGTGCATGCAGGTGGCACAG
CCCTTATGGCCAGCATACCCCTTGAGAGTGATGGCGAATGGACCCTCCTA
CCACGAAACCCAGCGTCGGCTCTGTTGCGGAACCCACACCCTCAATAACC
TCTACCAACACCATTGGATCGACACGGCCACGATGGACCATCTGGCGAGC
TCGCTTGGAGCGGCTGATAAAGCTAGCAGTGGCCAACACAAGGGCTCGGG
CTGGCTAGAGAGCGCCCTGCGCCGCGCGTCCGACCCGTTCGCCCCCACGG
CCTACCGGAGTTGGGTCCCGGGCTTGGGAGGCTACGACGTGTCGGTGCTG
GTGGAGGCCTTGAAGATGCGCAACGCGCGCTTCGACATGCACGTGCTGAA
GAACGGGCGTTTGGAGGAGGACCTGGCCGTCTTGCATGTCCGGCTCTCTG
GCGTGGCGGGGCGGGGACCGGGAGCGACCGAGGACGAGGGTCGAGGAGAG
CGGGCGATAGGCGTCATCTTGAATCGGAAGTCACGCACGTGGGCAGCGCG
CTGGCTCCTGGAAGGGCGACATTGGTTGGCGCTTATTCCTTGGCCTTCAG
GGTCGGCTGCGTCGGGAGGGGAGCAGATCAGGTGGTGGATGATGGACTCG
AAGCTCCCGGCGCCTGTGCTTGTCGGCGGGGCGGAGCACGCGGTGGCTTC
CGTAAGGGAGGCAGTGTGTGGGGAGGAAGGGCAGGCCTTCCTGGTGGTGG
AGGCCGTGGGGGCGGGGGAAAGGGGTTCGGGAGGAAGGGGGGTGGGAGGG
GGGGAGGAATCTCATGGAGGAAACCGAAGCGACGGCGAGTGATGAATCCT
CGTCTTGTACAGGCCATAAGGACTCAGACAGTCAGCGTCCGTGTAAATAG
CTTCGGAACACACCGCTTCTTGCACCCACTTATAATGCAAAAGAAAGCTT
AGGATGGACCGGTGCCA
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protein sequence of rna4462

>rna4462-protein ID=rna4462-protein|Name=rna4462|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MRFSGLFLALLLTCASTALAFVVRPAYQVSQLRRIRGVMTAGLFDGLFLS
DSEKEEAYQKQQEILRARQNPDKQKAYFQEVNKRRAEANKNYKEKFNLSK
NGKQDPAIKWMELRKKGVIGEREKYEQYGETNRGIIIPQVPFGNTKYDEG
ERFDLRLPYVDDGYVDESASLGNTIKRLFGFGKASKPTMLPQGLDSDGPN
SKKGAKGGNKK
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mRNA from alignment at CM002463.1:647594..649622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4462 ID=rna4462|Name=rna4462|organism=Nannochloropsis gaditana|type=mRNA|length=2029bp|location=Sequence derived from alignment at CM002463.1:647594..649622+ (Nannochloropsis gaditana)
TTGTGTTGGCCACTGCTAGCTTTATCAGCCGCTCCAAGCGAGCTCGCCAG
ATGGTCCATCGTGGCCGTGTCGATCCAATGGTGTTGGTAGAGGTTATTGA
GGGTGTGGGTTCCGCAACAGAGCCGACGCTGGGTTTCGTGGTAGGAGGGT
CCATTCGCCATCACTCTCACTGACATCACAAGAAGAATATAATGGGAATA
GGACCAAAGTGTCGGGTTGAGATACCGCCACTTCACCGCGACTTCATTTG
CACAGGCATGCTCACACGGCACTCGGGGGGAGCAAGCCAAATTACACTGC
GAATGCACGCCCAAGCTGTCGTTGTCTGAGGACAAGGACCACGAATTTTG
CGACTAAATGGAGACTCACAGGGGTATGCTGGCCATAAGGGCTGTGCCAC
CTGCATGCACTATGATGTCGCCTTCACTTTTGGAGGTGGACAGGCACTAG
GGCAAGCTGGGGGATCCGAAAAAGACTCTCAGAGGGCCCCCACGACGTCC
CGTCCCTTGCTGTCATGCACATGCACGACGAAGGACGGCACCCACAGCTG
CTGttgaccctccctttctcttggtACGCTTGACTTTGCATCGGAGAAAT
AAAATTTTGCTTACATGCATTTTGCTCTTGCCCTCGCTTCACGAGCACAC
TATAGGCAGGACAGCTCCTCGCCCTGCATGACTATAAACCGCGCGCACCT
AGGAATGGCATGAAAATCTTGTCAGAGGGCTGGGTTGAATATTTCCACGA
CGTGCATGTCTGCTCGAGGGAGGCAAAAACCAGCAAGAGCACAGCGGACT
TGGTCATGTCATCGTCGCTCCACTCGCGGAGCTCGCCATTTCTTGTGACG
GCTCCGTGTGGAAATACATGACACTCCCCTCGTCTATTCGCCCCGCTAGA
ACCACGTCTACTATGGCACACTACATGTCGATGGACCTCTAGCGTTCGTG
TCTTCCTAAGTAAGTTATAAAACAGGACGGTTCGACGAGCGCTCATTTCC
GCCATGAtacttcttttcttccctcccttatccCCCTTACGATTAAAATA
CAGAGGGGTAGCCCGCTTGGACACACAAGCATGAGATTTTCCGGCTTATT
TTTGGCTTTGTTGCTGACATGCGCAAGCACTGCTCTTGCTTTTGTTGTCC
GTCCAGCTTATCAGGTCTCACAATTACGCCGAATTCGCGGTGTTATGACA
GCAGGGCTCTTCGACGGTCTATTTCTGTCGGAtagtgaaaaggaggaggc
gtaTCAGAAGCAACAAGAAATTTTGCGGGCTCGCCAGAACCCAGACAAAC
AGAAAGCATACTTCCAAGAGGTAAACAAACGGCGGGCAGAGGCCAACAAG
AACTACAAGGAAAAGTTCAACCTTTCCAAGAACGGGAAGCAAGACCCGGC
CATCAAATGGATGGAGctaagaaagaaaggagtgattggggagagggaga
aatacGAGCAATACGGGGAGACCAACCGCGGCATCATCATTCCTCAGGTA
TGTCGATCACGACGGATAGATGATTGGCTTTTACGGTCGTAATTTATCCT
CGATATCGCGGGGTGGCCGCGCCCGAATAAGACTGGCGGTGTCTGGTGTC
TGTGGGTctggaagggtgggaggcagcCTTGCAATGTTTTGCTCCCTCTA
TCCAACCGATTTCCTTACGCAACATTTCCTCTTCAGGTGCCGTTCGGGAA
CACCAAAtacgacgagggggagcgCTTCGACCTCCGCTTGCCGTACGTGG
ACGATGGCTACGTGGATGAGTCGGCCAGCCTGGGGAACACGATCAAGCGC
CTGTTCGGCTTCGGTAAAGCCTCCAAACCCACCATGCTCCCACAGGGGCT
GGACTCGGACGGCCCCAATAGTAAGAAAGGGGCGAAGGGCGGGAATAAGA
AGTAATGCGAGGATTTCCGGAATCCCATGCCTGCGGCCACTGAACAAACT
GGTTGATGCATTAATTGTCTTTTCCTGGTGCATATTGACGACAAAAGAAT
AAACTGGAGCGCGCAGTGCAAGATAAGGA
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Coding sequence (CDS) from alignment at CM002463.1:647594..649622+

>rna4462 ID=rna4462|Name=rna4462|organism=Nannochloropsis gaditana|type=CDS|length=1272bp|location=Sequence derived from alignment at CM002463.1:647594..649622+ (Nannochloropsis gaditana)
ATGAGATTTTCCGGCTTATTTTTGGCTTTGTTGCTGACATGCGCAAGCAC
TGCTCTTGCTTTTGTTGTCCGTCCAGCTTATCAGGTCTCACAATTACGCC
GAATTCGCGGTGTTATGACAGCAGGGCTCTTCGACGGTCTATTTCTGTCG
GAtagtgaaaaggaggaggcgtaTCAGAAGCAACAAGAAATTTTGCGGGC
TCGCCAGAACCCAGACAAACAGAAAGCATACTTCCAAGAGGTAAACAAAC
GGCGGGCAGAGGCCAACAAGAACTACAAGGAAAAGTTCAACCTTTCCAAG
AACGGGAAGCAAGACCCGGCCATCAAATGGATGGAGctaagaaagaaagg
agtgattggggagagggagaaatacGAGCAATACGGGGAGACCAACCGCG
GCATCATCATTCCTCAGGTGCCGTTCGGGAACACCAAAtacgacgagggg
gagcgCTTCGACCTCCGCTTGCCGTACGTGGACGATGGCTACGTGGATGA
GTCGGCCAGCCTGGGGAACACGATCAAGCGCCTGTTCGGCTTCGGTAAAG
CCTCCAAACCCACCATGCTCCCACAGGGGCTGGACTCGGACGGCCCCAAT
AGTAAGAAAGGGGCGAAGGGCGGGAATAAGAAGTAAATGAGATTTTCCGG
CTTATTTTTGGCTTTGTTGCTGACATGCGCAAGCACTGCTCTTGCTTTTG
TTGTCCGTCCAGCTTATCAGGTCTCACAATTACGCCGAATTCGCGGTGTT
ATGACAGCAGGGCTCTTCGACGGTCTATTTCTGTCGGAtagtgaaaagga
ggaggcgtaTCAGAAGCAACAAGAAATTTTGCGGGCTCGCCAGAACCCAG
ACAAACAGAAAGCATACTTCCAAGAGGTAAACAAACGGCGGGCAGAGGCC
AACAAGAACTACAAGGAAAAGTTCAACCTTTCCAAGAACGGGAAGCAAGA
CCCGGCCATCAAATGGATGGAGctaagaaagaaaggagtgattggggaga
gggagaaatacGAGCAATACGGGGAGACCAACCGCGGCATCATCATTCCT
CAGGTGCCGTTCGGGAACACCAAAtacgacgagggggagcgCTTCGACCT
CCGCTTGCCGTACGTGGACGATGGCTACGTGGATGAGTCGGCCAGCCTGG
GGAACACGATCAAGCGCCTGTTCGGCTTCGGTAAAGCCTCCAAACCCACC
ATGCTCCCACAGGGGCTGGACTCGGACGGCCCCAATAGTAAGAAAGGGGC
GAAGGGCGGGAATAAGAAGTAA
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Synonyms
Publications