rna4442, rna4442 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4442
Unique Name	rna4442
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2099
Alignment location	CM002463.1:597164..598917 -

Link to JBrowse

Properties


Property Name	Value
Product	co-chaperone hsc20
Orig transcript id	gnl\|cribi\|Naga_100025g50.7542.mrna
Orig protein id	gnl\|cribi\|Naga_100025g50.7542
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:597164..598917 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g50	gene4286	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4442	rna4442-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26251.1	cds4431	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:597164..598917-
coding sequence from alignment at CM002463.1:597164..598917-

mRNA sequence

>rna4442 ID=rna4442|Name=rna4442|organism=Nannochloropsis gaditana|type=mRNA|length=2099bp
ATCACAGATATGGACAGAAGCAAGATCAAGATACTTCCTACGCCTCATAT
TCTGCGTTGCTTGCCTCTACTGTGTTCATTTTTGCCGTTTTTATCTATGG
CGTCGGCATTCATTCCCTTGACCTCCCGGCTACGAAACTCTCCACTTGTG
AGAGTTTGCCGACGTACCATGCACCCACCGACTTTTAGCATGCGCGAAGG
GATGAGTTTTAATAGCCCACCATACACCCGCAATAATAATCGACCAACGT
CTCGCGGACCGTCGTTTCGGCTTTTCAAAACCAGTGCGCCACTGCACGCC
AACGCAGGGGGCACGAATAACGACGACTTTGTGCCAATCTCCCCAGCAAC
TTTGAATTGGGAGAAAATTGGGCCGGATCAGGATGTCTTCATAAGTGCTT
TGTCTCAAAATGGCCATGTGAATGTCAAGGTCATCTCCGCGAAAAACATG
GTGCAAGCCATCCGGGAGAAGAGAGAGCTCTCCGCAGTCTCTACGGAACT
CCTCGGGCGTGTCATGCTTAGTGCCATGCTTGTCGCCAACGGCATCAAGG
ACGAAGAAACTTTACAACTTACATTCAGCGGGGACGGTGCGGCGAAAGGT
GTGATGGCTATATCCGATGGAGCTTGCAACGTGCGTGCCTGGATAGGCAA
CAGCGATCTCGACGACCTGAAGGACCCGGAGACGGGGAGGGCAGACATCA
AGGCCGCCGTGGGGAAAGGAACGCTACAAGTCGTCAAAAACCATCCCTCC
TGGCGCATTCCATACAACGGCGTGGTGCAGATTGCCTCGGGGGAGGTAGC
GCCCGACGTCGCCTTCTATCTGGCCTCCTCGGAGCAGCGGAATACGGCTC
TGGGCGTGGGCTTGTCCTTGGACCCAAAAACGGGAGAAGTGGAGTCAGCG
GGAGGTTTTTACATCGAAATGATGCCTGGTGTGGAGGAGGAGAGCGTGTT
GAAGGTGGAGGTGAATTTGGCGGTGCTGAAAGAACGCTTTGGGAGTGTGG
ATCCGGGGGTCTTGTTCGCGGGGAAGCAGCCGGTCACCCCCTACAAGCTG
GTCAAGATGCTCCTGGACGGTTTGGGCGTGGGGATGGCGGAAGAGACCCA
GCCCGCCTACCGTTGCACGTGCTCAGCCGAGAAGGTGTTTCGAGCTGTTA
GCCTTCTGGGAGAGGAGGAGGTTGAGAGCATTCTGGCCCAGGAGGGGATG
ATCGCGGCCAAGTGCGAGTTCTGCGCCGAGAAGTACGAGCTCTCGCGGGA
GCAGCTTGTAGCCTTGAGAGAAGAGGCGTTGGCGGCCGCGGAGGCAGGCG
AGCCGTGGCCGGCGCGTTGAGGGTGGGGTCCAGGGAAGCAGAAAACGTTG
AAAATTCTGGTCAAATACAGGATTGGAATAAAACGCATGTGAAGAAACCA
TGGTGTGTGGGGCGCAGCGAAACGTTGCGTGGTATTTGTTCGCTTCCATT
TGCACATTTTCAACCTCGACCACGCACCCTCCAGGCCCGTACGTTCCATC
TCTCCCCCGCGCTTCTTTACCCCTCTTTTTACACGCAACTTTCAAGGCTC
TTTCGCATACATATACCTTCAAGTCAAGGCAGCTCGTATCGCTATGCCTG
GCAACTAGCGACAGCTGCTCACTCCCACACAAATTGAGGCGAAAGACATA
GTCCTCCCGGCGTGGGCACTCCCCCCTCCCCTCGAATCGGCGAGTTGGTC
AAGAAAATACCTTTGGCAATGTCAGTCATGAATTTAACAACATGTGCACA
TCGCACCTTTCAACTCTCGGCTCGCGACGGAGCGATTTGAAGGCCTTAAG
GCCTTCACTGCTACCCAGACACTATTCAACACCCTCATGCACCCGTTTCA
TCTCTGCATCTCAAGCATGCTGCACCTCCTCCCTGTTCACAGCCTCACGC
CTCCTGTCATCAGCCTCGCCTTCCAGCAACTCAAGCCTCTCCCTTGCCTC
GAAGTCCACTTTACTCAGATACTGGAGCCGGTTCGTCAGCGATACCATAC
GCGACCAATCCTGAGAGGGCGATGAATGGAAAATGGTCAGAAAGTCGCAC
CACGGGAACAAAAAGAAGAAGCCCCCAACCGGCTTGCCATCAATTGACC

protein sequence of rna4442

>rna4442-protein ID=rna4442-protein|Name=rna4442|organism=Nannochloropsis gaditana|type=polypeptide|length=334bp
MSRHMLRTGALVTGIWNAEAKQSRFICASLHTSKTTALHQSRRAPPSGVL
ECLVSMRARTRRRPRPPSTVGSDRFASTAHNHDTYHQPPFCCGNPNCEHQ
QSHEDDSSGKHDHPQSHTEDLPPCWACGKPTGCCNFFCACGKIQPLIGHC
SYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNS
TYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELREE
VEESGSAENLRALMARNQRAMEGVKEELTARCRQKDWSRMVSLTNRLQYL
SKVDFEARERLELLEGEADDRRREAVNREEVQHA

mRNA from alignment at CM002463.1:597164..598917-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4442 ID=rna4442|Name=rna4442|organism=Nannochloropsis gaditana|type=mRNA|length=1754bp|location=Sequence derived from alignment at CM002463.1:597164..598917- (Nannochloropsis gaditana)
CAAAAAATGATCGCGTGCAAGGGGTGGGGCGTTTCTGTTCTTCGTGACGG
CGTACTAGATGTGCTTGCCTTGCTGATTATCTTCACGCCTGATCATTTGA
CAGGACATAAGTCAAGGCCCAAGACCCACATAGTAGTTAACGTGTGAAAG
GAGCTGCTGCGAAAGTATGTCGCGCCATATGCTTCGCACGGGAGCGCTTG
TGACAGGGATATGGAACGCGGAGGCAAAGCAATCCCGCTTCATCTGTGCG
TCGCTCCACACCAGCAAGACAACGGCGTTGCACCAAAGCCGCCGTGCACC
GCCCTCGGGCGTTTTGGAGTGTCTGGTAAGCATGCGGGCACGGACACGAC
GACGGCCACGGCCACCAAGCACAGTGGGATCAGATCGGTTCGCGTCGACT
GCCCACAATCACGATACGTACCATCAACCTCCCTTCTGTTGCGGCAATCC
GAACTGCGAACATCAGCAATCCCACGAAGATGACAGTAGTGGCAAACATG
ATCACCCGCAGTCCCACACGGAAGATCTCCCTCCCTGCTGGGCGTGCGGA
AAGCCCACGGGGTGTTGCAATTTCTTTTGTGCCTGCGGGAAAATTCAGCC
GTTAATCGGGCACTGCAGTTACTTCGAAACCTTCGGTTTGCCCAAGGTGT
ACGACTTGGACGTGAAGCAGCTCGAGCAGACCTTCTTCAATCTCCAGAAG
ACGATGCACCCGGATCGATACGGGCAAAAGTCCTCCACGGAGCAAGACTT
CTCCAGGTCGAACAGCACCTACTTGAACGTGGCCTACCGGACCTTGAAGG
ACCCGATTTCGCGCGCCAAGTACCTGCTGCAGTTGGAAGGCGTGAAGGCC
CTGGACGAGAGGAGCAAGACTGCGGACCCGGCGCTCTTGATGGAGGTGAT
GGAGCTCCGGGAGGAGGTGGAGGAGAGCGGCTCGGCCGAGAACTTGCGCG
CCTTGATGGCTCGAAACCAGCGGGCGATGGAGGGCGTGAAGGAGGAGCTG
ACCGCGCGCTGCAGGCAAAAGGTGAGAAGTGTTCAATTAAGCTGTGATAT
CTTCGTGTTATCCCTGGACGGAGGTCAATTGATGGCAAGCCGGTTGGGGG
CTTCTTCTTTTTGTTCCCGTGGTGCGACTTTCTGACCATTTTCCATTCAT
CGCCCTCTCAGGATTGGTCGCGTATGGTATCGCTGACGAACCGGCTCCAG
TATCTGAGTAAAGTGGACTTCGAGGCAAGGGAGAGGCTTGAGTTGCTGGA
AGGCGAGGCTGATGACAGGAGGCGTGAGGCTGTGAACAGGGAGGAGGTGC
AGCATGCTTGAGATGCAGAGATGAAACGGGTGCATGAGGGTGTTGAATAG
TGTCTGGGTAGCAGTGAAGGCCTTAAGGCCTTCAAATCGCTCCGTCGCGA
GCCGAGAGTTGAAAGGTGCGATGTGCACATGTTGTTAAATTCATGACTGA
CATTGCCAAAGGTATTTTCTTGACCAACTCGCCGATTCGAGGGGAGGGGG
GAGTGCCCACGCCGGGAGGACTATGTCTTTCGCCTCAATTTGTGTGGGAG
TGAGCAGCTGTCGCTAGTTGCCAGGCATAGCGATACGAGCTGCCTTGACT
TGAAGGTATATGTATGCGAAAGAGCCTTGAAAGTTGCGTGTAAAAAGAGG
GGTAAAGAAGCGCGGGGGAGAGATGGAACGTACGGGCCTGGAGGGTGCGT
GGTCGAGGTTGAAAATGTGCAAATGGAAGCGAACAAATACCACGCAACGT
TTCG

Coding sequence (CDS) from alignment at CM002463.1:597164..598917-

>rna4442 ID=rna4442|Name=rna4442|organism=Nannochloropsis gaditana|type=CDS|length=2010bp|location=Sequence derived from alignment at CM002463.1:597164..598917- (Nannochloropsis gaditana)
GATTGGTCGCGTATGGTATCGCTGACGAACCGGCTCCAGTATCTGAGTAA
AGTGGACTTCGAGGCAAGGGAGAGGCTTGAGTTGCTGGAAGGCGAGGCTG
ATGACAGGAGGCGTGAGGCTGTGAACAGGGAGGAGGTGCAGCATGCTTGA
ATGTCGCGCCATATGCTTCGCACGGGAGCGCTTGTGACAGGGATATGGAA
CGCGGAGGCAAAGCAATCCCGCTTCATCTGTGCGTCGCTCCACACCAGCA
AGACAACGGCGTTGCACCAAAGCCGCCGTGCACCGCCCTCGGGCGTTTTG
GAGTGTCTGGTAAGCATGCGGGCACGGACACGACGACGGCCACGGCCACC
AAGCACAGTGGGATCAGATCGGTTCGCGTCGACTGCCCACAATCACGATA
CGTACCATCAACCTCCCTTCTGTTGCGGCAATCCGAACTGCGAACATCAG
CAATCCCACGAAGATGACAGTAGTGGCAAACATGATCACCCGCAGTCCCA
CACGGAAGATCTCCCTCCCTGCTGGGCGTGCGGAAAGCCCACGGGGTGTT
GCAATTTCTTTTGTGCCTGCGGGAAAATTCAGCCGTTAATCGGGCACTGC
AGTTACTTCGAAACCTTCGGTTTGCCCAAGGTGTACGACTTGGACGTGAA
GCAGCTCGAGCAGACCTTCTTCAATCTCCAGAAGACGATGCACCCGGATC
GATACGGGCAAAAGTCCTCCACGGAGCAAGACTTCTCCAGGTCGAACAGC
ACCTACTTGAACGTGGCCTACCGGACCTTGAAGGACCCGATTTCGCGCGC
CAAGTACCTGCTGCAGTTGGAAGGCGTGAAGGCCCTGGACGAGAGGAGCA
AGACTGCGGACCCGGCGCTCTTGATGGAGGTGATGGAGCTCCGGGAGGAG
GTGGAGGAGAGCGGCTCGGCCGAGAACTTGCGCGCCTTGATGGCTCGAAA
CCAGCGGGCGATGGAGGGCGTGAAGGAGGAGCTGACCGCGCGCTGCAGGC
AAAAGGATTGGTCGCGTATGGTATCGCTGACGAACCGGCTCCAGTATCTG
AGTAAAGTGGACTTCGAGGCAAGGGAGAGGCTTGAGTTGCTGGAAGGCGA
GGCTGATGACAGGAGGCGTGAGGCTGTGAACAGGGAGGAGGTGCAGCATG
CTTGAATGTCGCGCCATATGCTTCGCACGGGAGCGCTTGTGACAGGGATA
TGGAACGCGGAGGCAAAGCAATCCCGCTTCATCTGTGCGTCGCTCCACAC
CAGCAAGACAACGGCGTTGCACCAAAGCCGCCGTGCACCGCCCTCGGGCG
TTTTGGAGTGTCTGGTAAGCATGCGGGCACGGACACGACGACGGCCACGG
CCACCAAGCACAGTGGGATCAGATCGGTTCGCGTCGACTGCCCACAATCA
CGATACGTACCATCAACCTCCCTTCTGTTGCGGCAATCCGAACTGCGAAC
ATCAGCAATCCCACGAAGATGACAGTAGTGGCAAACATGATCACCCGCAG
TCCCACACGGAAGATCTCCCTCCCTGCTGGGCGTGCGGAAAGCCCACGGG
GTGTTGCAATTTCTTTTGTGCCTGCGGGAAAATTCAGCCGTTAATCGGGC
ACTGCAGTTACTTCGAAACCTTCGGTTTGCCCAAGGTGTACGACTTGGAC
GTGAAGCAGCTCGAGCAGACCTTCTTCAATCTCCAGAAGACGATGCACCC
GGATCGATACGGGCAAAAGTCCTCCACGGAGCAAGACTTCTCCAGGTCGA
ACAGCACCTACTTGAACGTGGCCTACCGGACCTTGAAGGACCCGATTTCG
CGCGCCAAGTACCTGCTGCAGTTGGAAGGCGTGAAGGCCCTGGACGAGAG
GAGCAAGACTGCGGACCCGGCGCTCTTGATGGAGGTGATGGAGCTCCGGG
AGGAGGTGGAGGAGAGCGGCTCGGCCGAGAACTTGCGCGCCTTGATGGCT
CGAAACCAGCGGGCGATGGAGGGCGTGAAGGAGGAGCTGACCGCGCGCTG
CAGGCAAAAG

Synonyms

Publications