EWM26251.1, cds4431 (CDS) Nannochloropsis gaditana

Overview
NameEWM26251.1
Unique Namecds4431
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:597897..598751 -
Alignment locationCM002463.1:597607..597756 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26251.1
Productco-chaperone hsc20
Orig transcript idgnl|cribi|Naga_100025g50.7542.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:597897..598751 -
CM002463.1supercontigCM002463.1:597607..597756 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0005515protein binding
GO:0051087chaperone binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0019538protein metabolic process
GO:0006457protein folding
GO:0051259protein complex oligomerization
Vocabulary: INTERPRO
TermDefinition
IPR004640HscB
IPR001623DnaJ_domain
IPR009073HscB_oligo_C
Homology
BLAST of EWM26251.1 vs. NCBI_GenBank
Match: gi|585108250|gb|EWM26251.1| (co-chaperone hsc20 [Nannochloropsis gaditana])

HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0
Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 0
Query:    1 MSRHMLRTGALVTGIWNAEAKQSRFICASLHTSKTTALHQSRRAPPSGVLECLVSMRARTRRRPRPPSTVGSDRFASTAHNHDTYHQPPFCCGNPNCEHQQSHEDDSSGKHDHPQSHTEDLPPCWACGKPTGCCNFFCACGKIQPLIGHCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEELTARCRQKDWSRMVSLTNRLQYLSKVDFEARERLELLEGEADDRRREAVNREEVQHA 334
            MSRHMLRTGALVTGIWNAEAKQSRFICASLHTSKTTALHQSRRAPPSGVLECLVSMRARTRRRPRPPSTVGSDRFASTAHNHDTYHQPPFCCGNPNCEHQQSHEDDSSGKHDHPQSHTEDLPPCWACGKPTGCCNFFCACGKIQPLIGHCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEELTARCRQKDWSRMVSLTNRLQYLSKVDFEARERLELLEGEADDRRREAVNREEVQHA
Sbjct:    1 MSRHMLRTGALVTGIWNAEAKQSRFICASLHTSKTTALHQSRRAPPSGVLECLVSMRARTRRRPRPPSTVGSDRFASTAHNHDTYHQPPFCCGNPNCEHQQSHEDDSSGKHDHPQSHTEDLPPCWACGKPTGCCNFFCACGKIQPLIGHCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEELTARCRQKDWSRMVSLTNRLQYLSKVDFEARERLELLEGEADDRRREAVNREEVQHA 334          
BLAST of EWM26251.1 vs. NCBI_GenBank
Match: gi|673045825|ref|XP_008876873.1| (Fe-S protein assembly co-chaperone HscB [Aphanomyces invadans] >gi|574467535|gb|ETV94558.1| Fe-S protein assembly co-chaperone HscB [Aphanomyces invadans])

HSP 1 Score: 171.4 bits (433), Expect = 2.883e-48
Identity = 87/184 (47.28%), Postives = 119/184 (64.67%), Query Frame = 0
Query:  124 CWACGKPTGCCNFFC-ACGKIQPL--IGHCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEELT-ARCRQKDWSRMVSLTNRLQYLSKV 303
            CW CG+ T CC+FFC AC  IQPL   G C+YF+ FG+P+ + +D K++EQ +++LQK MHPD YG KS  E++ S  NS  +N AY  LK P SRA YLL+L G+ AL + +   +PA+LME+ME RE++EE  S E+L  L A N   +E    +LT A    +D++    LT  LQYL K+
Sbjct:   41 CWKCGERTTCCSFFCSACNHIQPLRAEGACNYFKIFGIPESFAIDAKKVEQLYWSLQKKMHPDLYGSKSEMEKELSVVNSALVNQAYNLLKAPTSRANYLLRLHGIDALGDATTYVEPAVLMEIMEAREDIEECDSMEHLEQLKAANASQIEACMHKLTQALDSNQDFAMSKQLTVELQYLVKL 224          
BLAST of EWM26251.1 vs. NCBI_GenBank
Match: gi|669164538|ref|XP_008617831.1| (hypothetical protein SDRG_13516 [Saprolegnia diclina VS20] >gi|530730594|gb|EQC28836.1| hypothetical protein SDRG_13516 [Saprolegnia diclina VS20])

HSP 1 Score: 170.244 bits (430), Expect = 1.062e-47
Identity = 89/209 (42.58%), Postives = 122/209 (58.37%), Query Frame = 0
Query:  112 DHPQSHTEDLPPCWACGKPTGCCNFFCA-CGKIQPL--IGHCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEELT-ARCRQKDWSRMVSLTNRLQYLSKVDFEARERLELLEG 316
            D  ++H      CW CGKP  CC FFC  C  IQPL   G C+YF+ FG+P+ + +D K +EQ +++LQK MHPD YG KS TE++ S +NS  +N AY  LK P +RA YLL L G+ AL + +   DPA+LM +ME RE+V++  S + L  L   N   +E    ++T A     D      LT +LQYL K+     ++ E LEG
Sbjct:   41 DRVKAHAHTDQKCWNCGKPNDCCVFFCGTCNHIQPLNPSGACNYFKIFGIPENFSIDPKAVEQLYWSLQKKMHPDLYGHKSETEKELSVTNSAVINTAYNMLKAPTTRANYLLHLHGIDALGDNTTLMDPAILMHIMEAREQVDDCTSVDELEPLKKANATDIEACVVQITSAFDGSHDLESSKRLTVQLQYLMKLAEAIVDKEEELEG 249          
BLAST of EWM26251.1 vs. NCBI_GenBank
Match: gi|1173941558|gb|OQR90699.1| (hypothetical protein THRCLA_22517 [Thraustotheca clavata])

HSP 1 Score: 169.088 bits (427), Expect = 3.034e-47
Identity = 89/197 (45.18%), Postives = 118/197 (59.90%), Query Frame = 0
Query:  124 CWACGKPTGCCNFFC-ACGKIQPL--IGHCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEELT-ARCRQKDWSRMVSLTNRLQYLSKVDFEARERLELLEG 316
            CW CGK   CC FFC +C +IQPL   G C+YF+ FG+P+ + +D K +EQ +++LQK MHPD YG KS TE++ S  NS  +N AY  LK P +RA YLL L G+ AL + +   DPA+LM +ME RE+V++  S E L  L   N   +E    E+T A     D      LT +LQYL K+     E+ E LEG
Sbjct:   50 CWNCGKANDCCAFFCNSCNRIQPLHPNGACNYFKIFGIPENFSIDPKAVEQLYWSLQKKMHPDLYGHKSETEKELSVVNSAVINTAYNMLKAPTTRANYLLHLHGIDALSDNTTLLDPAILMHIMESREQVDDCSSLEELEPLKKENAADIEKCVVEITSAFDGSHDLETSKRLTVQLQYLMKLAEAIVEKEEALEG 246          
BLAST of EWM26251.1 vs. NCBI_GenBank
Match: gi|698806212|ref|XP_009836135.1| (Fe-S protein assembly co-chaperone HscB [Aphanomyces astaci] >gi|574108972|gb|ETV74477.1| Fe-S protein assembly co-chaperone HscB [Aphanomyces astaci])

HSP 1 Score: 168.703 bits (426), Expect = 3.578e-47
Identity = 86/184 (46.74%), Postives = 114/184 (61.96%), Query Frame = 0
Query:  124 CWACGKPTGCCNFFCA-CGKIQPL--IGHCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEELT-ARCRQKDWSRMVSLTNRLQYLSKV 303
            CW CG+PT CC+FFCA C  IQPL   G C+YF+ FG+P+ + +D K++EQ +++LQK MHPD YG KS  E++ S  NS  +N AY  LK P SRA YLL L G+ AL + +   DPA LM +ME REE+EE  S + L    A N   +E   ++L  A    +D+     LT  LQYL K+
Sbjct:   42 CWKCGQPTDCCSFFCASCSHIQPLRAEGVCNYFKIFGIPESFAIDAKKVEQLYWSLQKKMHPDLYGSKSDVEKELSVVNSALVNQAYNLLKAPTSRANYLLHLHGIDALGDTTTFVDPATLMAIMEAREEIEECTSMDELDRHKAHNANQIEACMQKLAEAFDSNQDFDTSKRLTVELQYLVKL 225          
BLAST of EWM26251.1 vs. NCBI_GenBank
Match: gi|1173935950|gb|OQR86988.1| (hypothetical protein ACHHYP_09618 [Achlya hypogyna])

HSP 1 Score: 167.548 bits (423), Expect = 1.400e-46
Identity = 88/197 (44.67%), Postives = 117/197 (59.39%), Query Frame = 0
Query:  124 CWACGKPTGCCNFFCA-CGKIQPL--IGHCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEELT-ARCRQKDWSRMVSLTNRLQYLSKVDFEARERLELLEG 316
            CW CGK   CC FFCA C  IQPL   G C+YF+ FG+P+ + +D K +EQ +++LQK MHPD YG KS TE++ S  NS  +N AY  LK P +RA YLL L G+ AL + +   DPA+LM +ME RE+V++  + E L  L   N   +E    ++T A     D      LT +LQYL K+     E+ E LEG
Sbjct:   57 CWNCGKTNDCCVFFCASCNHIQPLHANGACNYFKIFGIPENFSIDPKAVEQLYWSLQKKMHPDLYGSKSQTEKELSVVNSAVINTAYNMLKAPTTRANYLLHLHGIDALSDNTTYMDPAILMHIMECREQVDDCTTLEELAPLKKENANDIERCVVQITSAFDGSHDLETSKRLTVQLQYLMKLAEAIVEKEEALEG 253          
BLAST of EWM26251.1 vs. NCBI_GenBank
Match: gi|695392801|ref|XP_009520437.1| (hypothetical protein PHYSODRAFT_359419 [Phytophthora sojae] >gi|348685334|gb|EGZ25149.1| hypothetical protein PHYSODRAFT_359419 [Phytophthora sojae])

HSP 1 Score: 153.68 bits (387), Expect = 2.107e-41
Identity = 84/210 (40.00%), Postives = 117/210 (55.71%), Query Frame = 0
Query:  112 DHPQSHTEDLPPCWACGKPTGCCNFFC-ACGKIQPLIG--HCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTA-DPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEEL-TARCRQKDWSRMVSLTNRLQYLSKVDFEARERLELLEG 316
            D P  H    P CW C   T CC+FFC +C  IQP+    HC YFE F +PK ++L+ + +E+T++NLQK +HPD YG KS  E++ S  N+  +N AY+ LK P +R KYLL L G+ AL E + TA DP LLM+ ME+RE + E+   + L  +       ++ V  +L     + KD          LQY+ K   E   R E L+G
Sbjct:   36 DAPCGHEAKGPDCWKCHHATDCCSFFCGSCNAIQPINKSCHCDYFEMFKIPKHFNLEQRSIEKTYWNLQKRLHPDLYGSKSEFEKELSAVNAAVINDAYKMLKKPNTRVKYLLALHGIDALGETASTAVDPELLMQTMEIRERIAEAQDVDALHEIRKEISDHIDAVINKLGEVYDKDKDLEATKQFAVELQYMVKCAEEIDLREEKLDG 245          
BLAST of EWM26251.1 vs. NCBI_GenBank
Match: gi|1183344271|gb|ORX73162.1| (Co-chaperone Hsc20 [Linderina pennispora])

HSP 1 Score: 149.828 bits (377), Expect = 4.246e-40
Identity = 78/194 (40.21%), Postives = 114/194 (58.76%), Query Frame = 0
Query:  114 PQSHTEDLPPCWACGKPTGCCNFFCA---CGKIQPLIGHCSYFETF-GLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEELTARCRQKDWSRMVSLTNRLQYLSKV 303
            P++  +    CW C + +   + FC+   CG IQP+    +YF+   G  + +D+D+ +L + F  LQ+ +HPD Y QK   E+  + + S+++N  Y TL+DP+ RA YLL+L G K ++E  K  DP LLMEVMELREE+E + S E + A+  RN  ++E V  EL A   Q D  R   LTN  QYL +V
Sbjct:   11 PETLPKKRKTCWHCQQESDPASVFCSNNKCGAIQPVGPTTTYFDVLVGGRRTFDVDMGELRRVFLKLQQGVHPDSYSQKEDIERTLAETQSSWINRGYATLRDPLHRAHYLLKLAGRK-INEEDKITDPELLMEVMELREEIEMAQSEEQMAAIKRRNDSSIEHVVRELAAAFGQDDLDRARQLTNHFQYLRRV 203          
BLAST of EWM26251.1 vs. NCBI_GenBank
Match: gi|698806214|ref|XP_009836136.1| (Fe-S protein assembly co-chaperone HscB, variant [Aphanomyces astaci] >gi|574108973|gb|ETV74478.1| Fe-S protein assembly co-chaperone HscB, variant [Aphanomyces astaci])

HSP 1 Score: 146.362 bits (368), Expect = 1.617e-39
Identity = 67/128 (52.34%), Postives = 87/128 (67.97%), Query Frame = 0
Query:  124 CWACGKPTGCCNFFCA-CGKIQPLI--GHCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTADPALLMEVMELR 248
            CW CG+PT CC+FFCA C  IQPL   G C+YF+ FG+P+ + +D K++EQ +++LQK MHPD YG KS  E++ S  NS  +N AY  LK P SRA YLL L G+ AL + +   DPA LM +ME R
Sbjct:   42 CWKCGQPTDCCSFFCASCSHIQPLRAEGVCNYFKIFGIPESFAIDAKKVEQLYWSLQKKMHPDLYGSKSDVEKELSVVNSALVNQAYNLLKAPTSRANYLLHLHGIDALGDTTTFVDPATLMAIMEAR 169          
BLAST of EWM26251.1 vs. NCBI_GenBank
Match: gi|301115162|ref|XP_002905310.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262110099|gb|EEY68151.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 148.288 bits (373), Expect = 3.634e-39
Identity = 79/200 (39.50%), Postives = 114/200 (57.00%), Query Frame = 0
Query:  122 PPCWACGKPTGCCNFFC-ACGKIQPLIG--HCSYFETFGLPKVYDLDVKQLEQTFFNLQKTMHPDRYGQKSSTEQDFSRSNSTYLNVAYRTLKDPISRAKYLLQLEGVKALDERSKTA-DPALLMEVMELREEVEESGSAENLRALMARNQRAMEGVKEEL-TARCRQKDWSRMVSLTNRLQYLSKVDFEARERLELLEG 316
            P CW C   T CC+FFC +C  IQP+    HC YFE F +PK ++L+ + +E+T++NLQK +HPD YG KS  E++ S  N+  +N AY+ LK P +R KYLL L G+ AL E + TA DP LLM+ ME+RE + E+   + L  +       ++ +  +L     + +D          LQY+ K   E   R E L+G
Sbjct:   47 PDCWKCHHATDCCSFFCKSCNAIQPIDKGCHCDYFEMFKVPKNFNLEQRSIEKTYWNLQKRLHPDLYGSKSEFEKELSAVNAAVINDAYKMLKKPNTRVKYLLALHGIDALGETASTAVDPELLMQTMEIRERIAEALDVDTLHEIRKEVSEHIDTIINKLGEVYDKDQDLESTKQYAVELQYMVKCAEEIDVREEKLDG 246          
The following BLAST results are available for this feature:
BLAST of EWM26251.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108250|gb|EWM26251.1|0.000e+0100.00co-chaperone hsc20 [Nannochloropsis gaditana][more]
gi|673045825|ref|XP_008876873.1|2.883e-4847.28Fe-S protein assembly co-chaperone HscB [Aphanomyc... [more]
gi|669164538|ref|XP_008617831.1|1.062e-4742.58hypothetical protein SDRG_13516 [Saprolegnia dicli... [more]
gi|1173941558|gb|OQR90699.1|3.034e-4745.18hypothetical protein THRCLA_22517 [Thraustotheca c... [more]
gi|698806212|ref|XP_009836135.1|3.578e-4746.74Fe-S protein assembly co-chaperone HscB [Aphanomyc... [more]
gi|1173935950|gb|OQR86988.1|1.400e-4644.67hypothetical protein ACHHYP_09618 [Achlya hypogyna... [more]
gi|695392801|ref|XP_009520437.1|2.107e-4140.00hypothetical protein PHYSODRAFT_359419 [Phytophtho... [more]
gi|1183344271|gb|ORX73162.1|4.246e-4040.21Co-chaperone Hsc20 [Linderina pennispora][more]
gi|698806214|ref|XP_009836136.1|1.617e-3952.34Fe-S protein assembly co-chaperone HscB, variant [... [more]
gi|301115162|ref|XP_002905310.1|3.634e-3939.50conserved hypothetical protein [Phytophthora infes... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4442rna4442Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications