EWM26203.1, cds4422 (CDS) Nannochloropsis gaditana

BLAST of EWM26203.1 vs. NCBI_GenBank
Match: gi|585108202|gb|EWM26203.1| (rna polymerase sigma factor [Nannochloropsis gaditana])

HSP 1 Score: 912.909 bits (2358), Expect = 0.000e+0
Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 0

Query:    1 MPMGRIQRKTVTHHHLLAAILAIASVGMTQTRAFLMPPPGVAVRKAGTRTSPNTYAAVMDAPVSIGALVGTQSPRISTQKSTGRRGRRRPTSAPPSSSASHPTNDHPRQNEVIHAPDSHASPTEHDILMQGRINAVQRAAVAIQKQRSLSKTLGRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDTEDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLRRNVDVVRLVHRRPASFDETFVAAGGV 448
            MPMGRIQRKTVTHHHLLAAILAIASVGMTQTRAFLMPPPGVAVRKAGTRTSPNTYAAVMDAPVSIGALVGTQSPRISTQKSTGRRGRRRPTSAPPSSSASHPTNDHPRQNEVIHAPDSHASPTEHDILMQGRINAVQRAAVAIQKQRSLSKTLGRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDTEDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLRRNVDVVRLVHRRPASFDETFVAAGGV
Sbjct:    1 MPMGRIQRKTVTHHHLLAAILAIASVGMTQTRAFLMPPPGVAVRKAGTRTSPNTYAAVMDAPVSIGALVGTQSPRISTQKSTGRRGRRRPTSAPPSSSASHPTNDHPRQNEVIHAPDSHASPTEHDILMQGRINAVQRAAVAIQKQRSLSKTLGRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDTEDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLRRNVDVVRLVHRRPASFDETFVAAGGV 448          

BLAST of EWM26203.1 vs. NCBI_GenBank
Match: gi|223994539|ref|XP_002286953.1| (plastid RNA polymerase sigma factor, partial [Thalassiosira pseudonana CCMP1335] >gi|220978268|gb|EED96594.1| plastid RNA polymerase sigma factor, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 104.375 bits (259), Expect = 1.649e-21
Identity = 85/273 (31.14%), Postives = 134/273 (49.08%), Query Frame = 0

Query:  157 PTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHE--RETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERS----SGQDGLGRGTSLRFSDTLQDTEDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLRR 423
            P+ A+WA A   +T E L  ++ +G  ++ +L+ G  GLVT+   +Y   L     ++L+ EG MG++EAA R+   +G  F TY  +W+R+R++ A     R      H   QA+ I+   + HE    T G+  S PE+A ++G+   K+       +    +ER+    S +D    G  +  ++     ED     +R      V  + +A+R         ER VL HR GL+DG PKT +E    M G S+  +R VEAKA   LR+
Sbjct:   36 PSEAQWASACS-LTVEQLNDIMNKGQESRTKLITGNVGLVTLIAKRYYNML-----RNLIQEGYMGIMEAAERYDPSKGFRFSTYGTHWIRQRIVRAIAESSRMIRLPVHV--QAT-IRNINKKHEEFEATIGRSPSLPELAHEMGVSLDKLHLYQHLSRNVISLERAVDQHSPEDNRTLGDRIACTELPTPDEDAMSEALR----GEVHSMLDALR-------DNERIVLTHRFGLDDGRPKTLKETAYGM-GISIDSVRAVEAKALNRLRQ 287          

BLAST of EWM26203.1 vs. NCBI_GenBank
Match: gi|168012500|ref|XP_001758940.1| (plastid sigma facor SIG2 [Physcomitrella patens] >gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens] >gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens] >gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens])

HSP 1 Score: 107.071 bits (266), Expect = 2.677e-21
Identity = 89/281 (31.67%), Postives = 141/281 (50.18%), Query Frame = 0

Query:  148 SLSKTLGRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKY-AQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKA----VQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDTEDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLRR 423
            +L + +GR  T  EW++A+G + +      L++G  A+ ++V     LV      Y  + ++   LQDL+ EG MG+V  A +F   +G  F TYA +W+R+ V  +     R+     H     S I KA    VQ H RE   +     E+A+ VG+   K++ + +  K  G MER  G+DG    T+L   + + DT DV   +  ++  +   ++E  +R     L   ER VL  R GL+DG  KT EE+GQ+    +   +R++EAKA   LR+
Sbjct:  301 NLEREIGRNATIGEWSRAVG-MEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMT---LQDLIQEGSMGLVRGAEKFDPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNE-----EVAELVGLTVEKLKSVVKSAKAPGSMERPIGKDG---DTTL--GELVADT-DVDSPEDAIVKQLMRQDIEGVLRT----LNPREREVLRLRFGLDDGRSKTLEEIGQIF-KVTRERIRQIEAKAMRKLRQ 561          

BLAST of EWM26203.1 vs. NCBI_GenBank
Match: gi|1210528018|dbj|GAX13133.1| (hypothetical protein FisN_17Hh062 [Fistulifera solaris])

HSP 1 Score: 104.76 bits (260), Expect = 8.904e-21
Identity = 94/320 (29.38%), Postives = 155/320 (48.44%), Query Frame = 0

Query:  124 EHDILMQGRINAVQRAAVAIQKQ-----RSLSKTLGRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSE-----------LQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMER-----SSGQDGLGRGTSLRFSDTLQDTEDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLR 422
            E ++L   RI    RAA+ ++ +      ++ +   R+PT A WA+A G V+ E L +LL +G  A+  +V    GLVT    ++  +L  S            +QD+V EG +G++EA  R++  +G  F TYA +WV++R++ +     R+    AH       ++KA    + +TG +  +TPE+A  + +P  K++  A   +    +E+     S  +D    G +L  S+     EDV  + +R  D   V E           L   ER V+ +R GL+DG P+T  E    + G +V  +R VEA+A   LR
Sbjct:  109 EEEVLYAFRIQTF-RAAMKVRDELVKNNDNVYEFHERSPTEANWAEACG-VSVENLRKLLEEGQSAREAVVAANIGLVTSIAKRHYAALKSSTAESGGVGTILTIQDMVQEGTLGLMEAVERYKPEKGFRFSTYATWWVKQRILRSILDSSRTIRLPAHVHAMLQKMRKAKMEFKEQTGREP-TTPELAHHLDVPLKKIQLYAESSRNVLSLEKPLKTTSFKEDSRTLGDTL-ASEGPTPEEDVEADYLR-RDIRAVMETS---------LAASEREVIINRYGLDDGNPRTVAETADSL-GLTVDRVRLVEARALNKLR 413          

BLAST of EWM26203.1 vs. NCBI_GenBank
Match: gi|1210521004|dbj|GAX20109.1| (hypothetical protein FisN_17Lh062 [Fistulifera solaris])

HSP 1 Score: 104.375 bits (259), Expect = 1.078e-20
Identity = 94/320 (29.38%), Postives = 155/320 (48.44%), Query Frame = 0

Query:  124 EHDILMQGRINAVQRAAVAIQKQ-----RSLSKTLGRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSE-----------LQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMER-----SSGQDGLGRGTSLRFSDTLQDTEDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLR 422
            E ++L   RI    RAA+ ++ +      ++ +   R+PT A WA+A G V+ E L +LL +G  A+  +V    GLVT    ++  +L  S            +QD+V EG +G++EA  R++  +G  F TYA +WV++R++ +     R+    AH       +KKA    + +TG +  +TPE+A  + +P  K++  A   +    +E+     S  +D    G +L  S+     ED+  + +R  D   V E           L   ER V+ +R GLEDG P++  E    + G +V  +R VEA+A   LR
Sbjct:   97 EEEVLYAFRIQTF-RAAMKVRDELVKNNDNVYEFHERSPTEANWAEACG-VSVENLRKLLEEGQGAREAVVAANIGLVTSIAKRHYAALKSSTAESGGVGTILTIQDMVQEGTLGLMEAVERYKPEKGFRFSTYATWWVKQRILRSILDSSRTIRLPAHVHAMLQKMKKAKMEFKEQTGREP-TTPELAHHLDVPLKKIQLYAESSRNVLSLEKPLKTTSFKEDSRTLGDTL-ASEGPTPEEDIEADYLR-RDIRAVMETS---------LAASEREVIINRYGLEDGNPRSVAETADSL-GLTVDRVRLVEARALNKLR 401          

BLAST of EWM26203.1 vs. NCBI_GenBank
Match: gi|821250514|gb|KKZ12702.1| (RNA polymerase sigma factor RpoD [Candidatus Synechococcus spongiarum 142])

HSP 1 Score: 100.908 bits (250), Expect = 2.251e-19
Identity = 84/270 (31.11%), Postives = 132/270 (48.89%), Query Frame = 0

Query:  154 GRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYA-QSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDTEDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLR 422
            GR P+ +EWA+ +  +      R L+ G  A+ ++VK    LV     KY  + LS    QDL+ EG +G+V AA +F   +G  F TYA +W+R+ +  A     R+     H     S IKK+ ++  +E G K  S  EIA+++ +   K+  +A+  +    +E   G++   R      S T    +DV  N +R           E +   +A L   ER VL  R GL+DG  KT E++GQ+ +  +   +R++EAKA   LR
Sbjct:  231 GRLPSMSEWAEQVA-MPYRSFKRRLKLGRRAKDKMVKSNLRLVVSIAKKYMNRGLS---FQDLIQEGSLGLVRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKSTKTLSQELGRKP-SEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESGTENPDQDVAKNLLR-----------EDLESVLATLNPRERDVLRLRYGLDDGRMKTLEDIGQIFE-VTRERIRQIEAKALRKLR 483          

BLAST of EWM26203.1 vs. NCBI_GenBank
Match: gi|504987375|ref|WP_015174477.1| (RNA polymerase sigma factor, RpoD/SigA family [Oscillatoria nigro-viridis] >gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria nigro-viridis PCC 7112])

HSP 1 Score: 98.2117 bits (243), Expect = 3.135e-19
Identity = 87/292 (29.79%), Postives = 145/292 (49.66%), Query Frame = 0

Query:  136 VQRAAVAIQKQRSLSKTLGRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDT----EDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLRR 423
            VQR+    Q++  L++ LGR PT AEWAQA+G ++E  L R + QG  A+ ++V+    LV     KY +   + +L DL+ EG +G+     +F   +G  F TYA++W+R+ +  A     R+     H   + + IKKA Q    +  G+  +  E+A ++ +   ++ +   R  R  L    S    +G        D L+DT    ED        L S   +++++     +A L Q++R VL  R GLEDG   T  ++G  ++  S   +R++E +A T LR+
Sbjct:   37 VQRSTALHQEKNILAEELGRDPTAAEWAQAVG-LSEAQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKR--NVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKA-QRQLAQQLGRAATAAELASELELTPKQIREYLDRA-RLPL----SLDLRVGDNQDTELGDLLEDTGTTPEDFA------LQSSLRTDLDQ----LMAELTQQQREVLALRFGLEDGQTLTLAKIGDRLN-ISRERVRQIEREALTKLRK 308          

BLAST of EWM26203.1 vs. NCBI_GenBank
Match: gi|1405331|dbj|BAA11832.1| (chloroplast RNA polymerase sigma subunit [Cyanidium caldarium])

HSP 1 Score: 100.523 bits (249), Expect = 4.681e-19
Identity = 85/281 (30.25%), Postives = 132/281 (46.98%), Query Frame = 0

Query:  144 QKQRSLSKTLGRAPTGAEWAQALG-GVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDT-EDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLR 422
            Q QRS  +  G++PT +EWAQ  G G   E L   +R G  A+  +V     LV     +Y+       LQDL+ EG +G++    +F   +G  F TYA +W+R+ +  A     RS     H     SLI+K  ++ + E  G+  S  EI + VGI  AK          Y L+   S ++ +   T LR  D +    E +   + R  ++     + E++   +  L   ER V+  R GL DG P+T EE+G   +  +   +R++E+KA   LR
Sbjct:  311 QFQRSFREEHGKSPTESEWAQGCGYGDDVEKLREHIRDGRKAKERMVTANLRLVVSIAKRYSNR--GVALQDLIQEGSIGLIRGVEKFDAERGFRFSTYATWWIRQSITRAISDSSRSIRLPVHVHDTISLIRKQTKALQVEL-GRPPSEEEICESVGIDRAK----------YRLVMECS-RNIVSLETPLRSGDDVHFLGESLIAPEERAEENCSRDTLRESIEKVLHCLSTREREVIRMRFGLTDGRPRTLEEVGSRFN-VTRERIRQIESKALKKLR 576          

BLAST of EWM26203.1 vs. NCBI_GenBank
Match: gi|493683742|ref|WP_006633882.1| (RNA polymerase sigma factor, RpoD/SigA family [Microcoleus vaginatus] >gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus vaginatus FGP-2])

HSP 1 Score: 97.0561 bits (240), Expect = 8.160e-19
Identity = 87/294 (29.59%), Postives = 141/294 (47.96%), Query Frame = 0

Query:  136 VQRAAVAIQKQRSLSKTLGRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDT------EDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLRR 423
            VQR+    Q++  L++ LGR PT AEWAQA+G ++E  L R + QG  A+ ++V+    LV     KY +   + +L DL+ EG +G+     +F   +G  F TYA++W+R+ +  A     R+     H   + + IKKA Q    +  G+  +  E+A ++ +   ++ +   R +             L     LR  D  QDT      ED G       D    S +   +   +A L Q++R VL  R GLEDG   T  ++G  ++  S   +R++E +A T LR+
Sbjct:   37 VQRSTALHQEKDILAEELGRDPTAAEWAQAVG-LSEAQLQRTIEQGERAKRQMVEANLRLVVSVAKKYIKR--NVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKA-QRQLAQQLGRAATAAELASELELTPKQIREYLDRAR-------------LPLSLDLRVGDN-QDTELGDLLEDTGTTPE---DFALQSSLRTDLDHLMAELTQQQREVLALRFGLEDGQTLTLAKIGDRLN-ISRERVRQIEREALTKLRK 308          

BLAST of EWM26203.1 vs. NCBI_GenBank
Match: gi|1181274482|ref|WP_084580491.1| (RNA polymerase subunit sigma [Kutzneria sp. 744])

HSP 1 Score: 97.4413 bits (241), Expect = 9.487e-19
Identity = 74/257 (28.79%), Postives = 123/257 (47.86%), Query Frame = 0

Query:  166 LGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFVGKYAQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRVMDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVGIPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDTEDVGGNQVRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQVMDGCSVSYMRKVEAKAKTHLR 422
            LGG T E L  + R G  A+  +++    LV     KY+         D++ EG +G++ A  +F   +G  F TYA +W+R+ +        R      H   Q + I KA +    + G +  S  EIAD+ G+P  +V +L R  +    ++ + G+DG         SD ++DT     + VR  D +    + E+VR  V  LPQ E  +++ R GL+ G P+T +E+ + + G +   +R++E  A   LR
Sbjct:   97 LGGRTREELALVSRDGEQARDHMIRANLRLVVSTARKYSHR--GLPFLDVIQEGNLGLIRAVEKFDYAKGFKFSTYAMWWIRQAIERGVAETSRVIRLPVHVVEQVNKIAKADRQLNLKLGREP-SVAEIADECGLPVERVVELRRASREATSLDATVGEDG-----ETTISDLIEDT-----DSVRASDVLEREALTESVRAVVNTLPQREALIVSLRFGLDGGNPRTLQEVAERV-GLTRERVRQLEKGALAQLR 339