rna4433, rna4433 (mRNA) Nannochloropsis gaditana

Overview
Namerna4433
Unique Namerna4433
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length795
Alignment locationCM002463.1:580182..582412 +

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Properties
Property NameValue
Productrna polymerase sigma factor
Orig transcript idgnl|cribi|Naga_100025g60.7494.mrna
Orig protein idgnl|cribi|Naga_100025g60.7494
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:580182..582412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g60gene4277Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4433rna4433-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26203.1cds4422Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4433 ID=rna4433|Name=rna4433|organism=Nannochloropsis gaditana|type=mRNA|length=795bp
ATGTCAAGTCTGTACTCACTTTCCCTCCGCTACACAGGCAATACCATGAA
GGCCATTCAAAATATGCTGCCTGGTGCTCAGGAGGAGTCTGTCACGGAGG
AGGTCTGTGCCATGTGCCCGTCCTTGACTTATCAACAGCGCATGATTGGT
TTCGTGGGCTGTTTTTGCCTTGGCTATCTACTCTCTTTCATTGGGACACT
ATCGTTAATATCGATGACAGCAGATGGTATTCGCAATTTTGCCGCTTTGT
ACGTGGTTGGGAACATCATCGCCTTGTGCTCAACTGGCTTCCTCGTCGGG
CCCAAGAGCCAATGCAAGAAGATGTTCGACAAAACTCGGCGCTACTCTAC
CATCCTTTACATCATCATGCTCATCGTCGTTTTCGCCGTGGCACTGGCCC
GTCAGAACGTCTTTCTGGTCCTCTTCCTCCTGATCATCCAGGTATTGGTG
GCAGTGTGGTATACCTTGTCCTACGTGCCTTTCGGGCGCCAGGCAGTTGT
CGGTTGTATGCAAAACACCCTCTTCAAGCCCTGTCCAGGAGCCATCGCGG
GAATGGTGGCAAAGAAGAGCTGTCATCACCTCCGGCAGCGAAACCATTTA
TGGAAGACAACCACACCATTTATATATTGTAATGTAGTCTGCAGGAAGCC
CACAGATTCGGCAATGATAACTTCGACTTCTTGCTCGTCTGAAAAGCACC
GCCGTTCTGTCGACGGAACCATGCCCGTGACGCCGTCTTCCATGTGTCTG
CTTTCTCGACAGCGCGAGAGTAAGCGATGGACGATACATATTTAA
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protein sequence of rna4433

>rna4433-protein ID=rna4433-protein|Name=rna4433|organism=Nannochloropsis gaditana|type=polypeptide|length=448bp
MPMGRIQRKTVTHHHLLAAILAIASVGMTQTRAFLMPPPGVAVRKAGTRT
SPNTYAAVMDAPVSIGALVGTQSPRISTQKSTGRRGRRRPTSAPPSSSAS
HPTNDHPRQNEVIHAPDSHASPTEHDILMQGRINAVQRAAVAIQKQRSLS
KTLGRAPTGAEWAQALGGVTEEGLGRLLRQGTVAQAELVKGWEGLVTMFV
GKYAQSLSDSELQDLVVEGQMGVVEAALRFQGGQGATFKTYAFYWVRKRV
MDAAGMYDRSTFAGAHEARQASLIKKAVQSHERETGGKILSTPEIADKVG
IPSAKVEQLARRGKRYGLMERSSGQDGLGRGTSLRFSDTLQDTEDVGGNQ
VRVLDSMYVSEVEEAVRLAVARLPQEERTVLNHRLGLEDGLPKTWEELGQ
VMDGCSVSYMRKVEAKAKTHLRRNVDVVRLVHRRPASFDETFVAAGGV
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mRNA from alignment at CM002463.1:580182..582412+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4433 ID=rna4433|Name=rna4433|organism=Nannochloropsis gaditana|type=mRNA|length=2231bp|location=Sequence derived from alignment at CM002463.1:580182..582412+ (Nannochloropsis gaditana)
CTTGTTGCACCACCTCAGCAGATGTCCCACACCGGCAATACACGCGTGCC
TGCGCCGTCGCGACGTGGGTCAGGGATCTTGTCTGGAAGCGGTTTTGAAA
CGTCAAGGAGGATTTGGGGTGCGTTCGATGAACATTGTGCCGCGTATGCG
TTCTCATATGCAGCCACGTCGTCCTCATCTCGCCTCCGAGTGAGAGGAAC
ACGTATTGAGGTCGGACTCTGTCTTACCTCcgcgcctttcttcttcgggA
AGTCcatgccttctcctttccgaAAGGGGTTATACCTGTCCGGCACAATC
GGTTGTGCTTTATCAACAAACCACGTACATCAAACActgcatttttttct
ttttcctctttacCTGTCCAGAAGGATCCAGATCTAGATCGCCACCTCAG
ATCGAAAGACACGTTCGAAGAGGAACATCGACATCACGCCTCAGTGTGTC
TCAATGCCAATGGGTCGCATACAACGCAAGACAGTCACGCACCATCATCT
TCTAGCCGCGATTCTGGCCATCGCTTCTGTGGGCATGACGCAAACTAGAG
CATTCCTCATGCCCCCTCCTGGTGTTGCGGTCAGAAAAGCCGGAACACGC
ACGTCTCCAAACACGTACGCCGCAGTTATGGATGCACCTGTCTCAATCGG
TGCATTGGTAGGCACTCAAAGCCCCCGAATAAGTACACAGAAGAGCACAG
GACGgcgtggacgaagaaggccaaCCAGTGcaccaccctcctcgtcagcc
tcccaccccaccaaCGACCATCCCCGCCAAAACGAAGTCATCCATGCACC
CGATTCCCACGCATCCCCCACCGAACATGACATCTTAATGCAGGGGCGTA
TAAATGCCGTGCAGCGCGCAGCAGTTGCGATTCAAAAGCAACGGAGTCTG
AGCAAGACTCTCGGCCGCGCGCCCACAGGTGCTGAGTGGGCCCAGGCCCT
AGGCGGTgtgacagaggaggggctCGGGCGGCTTTTGAGACAAGGAACTG
TTGCGCAAGCCGAACTGGtgaaaggatgggagggccTGGTCACCATGTTT
GTTGGAAAGTACGCACAATCCTTGTCGGACTCGGAGCTGCAGGACTTGGT
CGTCGAGGGGCAgatgggggtggtggaggcggccctcCGTTTTCAGGGTG
GACAAGGCGCCACCTTTAAGACCTACGCCTTTTACTGGGTCCGAAAGCGC
GTGATGGATGCGGCAGGCATGTACGACCGCTCGACGTTCGCTGGCGCCCA
CGAAGCGAGGCAGGCGTCGCTAATCAAGAAGGCGGTGCAATCACATGAAC
GTGAGACGGGGGGTAAGATCTTGAGCACGCCGGAGATCGCCGACAAAGTT
GGAATACCATCGGCGAAGGTGGAGCAGCTCGCCCGGCGGGGCAAGCGGTA
TGGGCTCATGGAGAGGAGCAGTGGTCAGGATGGATTGGGCAGGGGGACAA
GCCTGAGGTTCTCCGACACCCTCCAGGACACCGAGGATGTAGGAGGCAAC
CAAGTACGAGTATTGGACTCAATGTACGTCtcagaggtggaggaagcagT
GCGGTTGGCGGTAGCGCGATTGCCGCAGGAGGAGCGGACTGTGCTAAACC
ACCGGctggggctggaggacgggctcccCAAGACGTGGGAGGAACTAGGG
CAAGTGATGGACGGATGCAGCGTTTCCTATATgcggaaggtggaggcgaa
aGCAAAGACGCACTTGCGCCGAAACGTGGATGTTGTTCGGTTAGTACACC
GGCGTCCAGCCTCCTTTGACGAGACGTTTGTGGCGGCTGGAGGTGTATAA
AAGGCGCGACGGTGCCAGGGGAAGAACAGGGAATGTGTCGATATTGATAG
ATTGAGATAGTTTGGCAGTAGCGATGGTATGCGGTGTGGTGACGTGTTCA
GAACCCTGAGAAACGTGAGTATCCGGAGGACTCGTCTCAGTGCGAGGACA
GCGAGTCCTGTCCCATTATACTGCCGACTTAGTTGGTATTATGCCACCTT
TGCGTTGACTGAGGTTGAGTGATGGGGAGTCAGCTTGAAAGGTGGTCAGA
GTGTTTCTCTATTGAAGTGAGGATACACATCCCCAAACAGAGAGACGAAG
GATAACAGTCGTTTCGTGTGAAATATGTACAGCAGTGCAACAATTGCAGC
TAACTTCTGTTCGACATGAATGCAATGAAGGCAAGAATATAAGGCAGTAA
TCTATGCTGGGCCTGAAATCTAAATTTTATC
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Coding sequence (CDS) from alignment at CM002463.1:580182..582412+

>rna4433 ID=rna4433|Name=rna4433|organism=Nannochloropsis gaditana|type=CDS|length=1347bp|location=Sequence derived from alignment at CM002463.1:580182..582412+ (Nannochloropsis gaditana)
ATGCCAATGGGTCGCATACAACGCAAGACAGTCACGCACCATCATCTTCT
AGCCGCGATTCTGGCCATCGCTTCTGTGGGCATGACGCAAACTAGAGCAT
TCCTCATGCCCCCTCCTGGTGTTGCGGTCAGAAAAGCCGGAACACGCACG
TCTCCAAACACGTACGCCGCAGTTATGGATGCACCTGTCTCAATCGGTGC
ATTGGTAGGCACTCAAAGCCCCCGAATAAGTACACAGAAGAGCACAGGAC
GgcgtggacgaagaaggccaaCCAGTGcaccaccctcctcgtcagcctcc
caccccaccaaCGACCATCCCCGCCAAAACGAAGTCATCCATGCACCCGA
TTCCCACGCATCCCCCACCGAACATGACATCTTAATGCAGGGGCGTATAA
ATGCCGTGCAGCGCGCAGCAGTTGCGATTCAAAAGCAACGGAGTCTGAGC
AAGACTCTCGGCCGCGCGCCCACAGGTGCTGAGTGGGCCCAGGCCCTAGG
CGGTgtgacagaggaggggctCGGGCGGCTTTTGAGACAAGGAACTGTTG
CGCAAGCCGAACTGGtgaaaggatgggagggccTGGTCACCATGTTTGTT
GGAAAGTACGCACAATCCTTGTCGGACTCGGAGCTGCAGGACTTGGTCGT
CGAGGGGCAgatgggggtggtggaggcggccctcCGTTTTCAGGGTGGAC
AAGGCGCCACCTTTAAGACCTACGCCTTTTACTGGGTCCGAAAGCGCGTG
ATGGATGCGGCAGGCATGTACGACCGCTCGACGTTCGCTGGCGCCCACGA
AGCGAGGCAGGCGTCGCTAATCAAGAAGGCGGTGCAATCACATGAACGTG
AGACGGGGGGTAAGATCTTGAGCACGCCGGAGATCGCCGACAAAGTTGGA
ATACCATCGGCGAAGGTGGAGCAGCTCGCCCGGCGGGGCAAGCGGTATGG
GCTCATGGAGAGGAGCAGTGGTCAGGATGGATTGGGCAGGGGGACAAGCC
TGAGGTTCTCCGACACCCTCCAGGACACCGAGGATGTAGGAGGCAACCAA
GTACGAGTATTGGACTCAATGTACGTCtcagaggtggaggaagcagTGCG
GTTGGCGGTAGCGCGATTGCCGCAGGAGGAGCGGACTGTGCTAAACCACC
GGctggggctggaggacgggctcccCAAGACGTGGGAGGAACTAGGGCAA
GTGATGGACGGATGCAGCGTTTCCTATATgcggaaggtggaggcgaaaGC
AAAGACGCACTTGCGCCGAAACGTGGATGTTGTTCGGTTAGTACACCGGC
GTCCAGCCTCCTTTGACGAGACGTTTGTGGCGGCTGGAGGTGTATAA
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Synonyms
Publications