EWM26298.1, cds4371 (CDS) Nannochloropsis gaditana

Overview
NameEWM26298.1
Unique Namecds4371
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:433323..434396 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26298.1
Productreplication factor c subunit 3
Orig transcript idgnl|cribi|Naga_100093g7.5095.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:433323..434396 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0006260DNA replication
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR008921DNA_pol3_clamp-load_cplx_C
IPR013748Rep_factorC_C_dom
IPR027417P-loop_NTPase
IPR003593AAA+_ATPase
Homology
BLAST of EWM26298.1 vs. NCBI_GenBank
Match: gi|585108304|gb|EWM26298.1| (replication factor c subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 736.102 bits (1899), Expect = 0.000e+0
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 0
Query:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSEDGEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRTIELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGRAYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAEQEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTFGF 357
            MLWVDKHRPTTLAKMDYHEDLTARLEALSEDGEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRTIELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGRAYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAEQEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTFGF
Sbjct:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSEDGEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRTIELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGRAYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAEQEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTFGF 357          
BLAST of EWM26298.1 vs. NCBI_GenBank
Match: gi|676378035|ref|XP_009032296.1| (hypothetical protein AURANDRAFT_69595 [Aureococcus anophagefferens] >gi|323456769|gb|EGB12635.1| hypothetical protein AURANDRAFT_69595 [Aureococcus anophagefferens])

HSP 1 Score: 477.633 bits (1228), Expect = 1.521e-166
Identity = 229/356 (64.33%), Postives = 278/356 (78.09%), Query Frame = 0
Query:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSEDGEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRTIELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGRAYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAEQEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTFG 356
            MLWVDKHRP  L KM YH +L+ RL  L+ DG++PHLLFYGP GAGKKTRIMALLR ++GAG EK RLEH+ FKTPT + IE+T +AS +H EIN ++AG+ DR+VVQEVIKEIAQS   +   G  G   YKVV+L EVDRL+RQAQA LRRTMEK T++CRLILCCN+ S+VI+P+RSRCLGIRVAAP+   I A+L+ V+ +E    LP ALA RIA+ S RNLRRA+L LE C+VQQ+PF A Q V +PDWE+Y+  +A  +  EQSPQRL+  RD LYELL+ CIP+DVILKTL RELL  LDD++K EV+ WAAFYEHR+  G+KEIFHLEAFVAKFM LYK F++  F 
Sbjct:    1 MLWVDKHRPLELGKMSYHGELSERLATLAADGDIPHLLFYGPSGAGKKTRIMALLRALYGAGAEKQRLEHRDFKTPTNKAIEVTTVASNYHIEINPSDAGNNDRYVVQEVIKEIAQS--GSLHKGDKGRVGYKVVLLVEVDRLTRQAQAGLRRTMEKCTSSCRLILCCNNPSKVIDPLRSRCLGIRVAAPTEAEIVAVLDDVAARERLD-LPPALAARIAKASKRNLRRAILSLEECKVQQYPFDAAQAVPLPDWEQYVVAIASDIAREQSPQRLLATRDKLYELLSKCIPADVILKTLARELLKNLDDEMKAEVLKWAAFYEHRITQGNKEIFHLEAFVAKFMCLYKKFMMEMFA 353          
BLAST of EWM26298.1 vs. NCBI_GenBank
Match: gi|298714917|emb|CBJ27673.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 471.47 bits (1212), Expect = 5.415e-164
Identity = 221/361 (61.22%), Postives = 287/361 (79.50%), Query Frame = 0
Query:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSEDGEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRTIELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGR------AYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAEQEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTF 355
            MLWVDKHRP +L  +D H +LT RL A+SEDGE+PHLLFYGP G+GKKTR++ALL++++G G E+ RLEH++FKTP+ R +ELT +AS +H E++  +AG  DR+VVQ++IKEIAQ+ + +A+MG  G         +KVV+L  VDRL++QAQA LRRTME+YT++CRLIL C+S S+VIEPVRSRCLG+RV APS   +C++L  V +KES   LP ALA R+A+ S RNLRRA+LM+EACRVQQ+PFS +QEV++ DWE YI +LA  +  EQSP+RL+ AR+ LYELLTNCIP+D+ILKTL REL+  LD +L  EV  WAAFYEHR+ +GSKEI HLEAFVAKFM++YKA++I  F
Sbjct:    1 MLWVDKHRPKSLDSLDVHPELTTRLAAMSEDGEIPHLLFYGPAGSGKKTRVLALLKRIYGPGAERVRLEHRSFKTPSNRVVELTTVASNYHIEMSPGDAGIYDRYVVQDIIKEIAQNRSISASMGGGGSDDKKSKIGHKVVVLVGVDRLTKQAQAGLRRTMERYTSSCRLILLCHSPSKVIEPVRSRCLGVRVPAPSESEVCSVLTSVCRKESL-TLPPALAARVAKVSKRNLRRAVLMIEACRVQQYPFSEDQEVQMTDWENYITQLAREVVLEQSPRRLLEAREKLYELLTNCIPADIILKTLTRELVKNLDCKLWGEVFKWAAFYEHRLHMGSKEILHLEAFVAKFMSIYKAYIIAEF 360          
BLAST of EWM26298.1 vs. NCBI_GenBank
Match: gi|223998512|ref|XP_002288929.1| (replication factor C 37 KD subunit [Thalassiosira pseudonana CCMP1335] >gi|220976037|gb|EED94365.1| replication factor C 37 KD subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 462.996 bits (1190), Expect = 1.164e-160
Identity = 223/362 (61.60%), Postives = 283/362 (78.18%), Query Frame = 0
Query:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSED-GEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRTIELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGRAYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAE-----QEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTFG 356
            MLWVDKHRPT L ++ YH  LTARLE+LS D G +PHLLFYGPPG+GKKTRI ALLR VFG G E+ RL+ +TF TPT RT+E+ +++S +H E++  +AG  DRFV+Q+VIKE+A S N  A +G A    YKVV+L EVD+L+RQAQAALRRTMEKY+++CRLILCCN+ S+VI+PVRSRCLGIRVAAPSH+ I  +L  V++KES   LP+ LA+ +A++S RNLRRALLMLE+C V     S +     Q +   DWE YI++LA  +T EQSP+RL++AR+ LYELL NCIP+  ILKTL+ ELLP LDD +K EVV WAAFYEHR+ +GSKEIFHLEAF+AKFM++YK ++ + FG
Sbjct:    1 MLWVDKHRPTRLTQLTYHGTLTARLESLSADPGGLPHLLFYGPPGSGKKTRIAALLRSVFGHGSERLRLDKRTFTTPTNRTVEINMISSNYHIEMSPGDAGLNDRFVIQDVIKEMASSKN-IATVGTANNE-YKVVVLVEVDKLTRQAQAALRRTMEKYSSSCRLILCCNNPSKVIDPVRSRCLGIRVAAPSHDEIATVLKTVARKESI-TLPDELAISLARSSNRNLRRALLMLESCHVTTRDDSPKELKPNQPIPHTDWERYISQLASEITREQSPKRLIMAREKLYELLINCIPAQTILKTLVMELLPTLDDSIKGEVVTWAAFYEHRIALGSKEIFHLEAFIAKFMSIYKRYINDMFG 359          
BLAST of EWM26298.1 vs. NCBI_GenBank
Match: gi|675181949|ref|XP_008899859.1| (hypothetical protein PPTG_07433 [Phytophthora parasitica INRA-310] >gi|566031696|gb|ETI54607.1| hypothetical protein F443_02615 [Phytophthora parasitica P1569] >gi|568026984|gb|ETM00954.1| hypothetical protein L917_02398 [Phytophthora parasitica] >gi|568057464|gb|ETM54129.1| hypothetical protein L914_02492 [Phytophthora parasitica] >gi|568100584|gb|ETN15283.1| hypothetical protein PPTG_07433 [Phytophthora parasitica INRA-310] >gi|570335413|gb|ETO83361.1| hypothetical protein F444_02615 [Phytophthora parasitica P1976] >gi|570995574|gb|ETP52395.1| hypothetical protein F442_02591 [Phytophthora parasitica P10297] >gi|970635055|gb|KUF80072.1| Replication factor C subunit 3 [Phytophthora nicotianae] >gi|970659033|gb|KUF96724.1| Replication factor C subunit 3 [Phytophthora nicotianae])

HSP 1 Score: 445.662 bits (1145), Expect = 7.479e-154
Identity = 212/356 (59.55%), Postives = 273/356 (76.69%), Query Frame = 0
Query:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSEDGEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRT-IELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGRAYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAEQEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTF 355
            MLWVDK+RPT+L+ +D+H ++T RL  LS+  ++PHLL YGP GAGKKTRIMALLR ++G G  K RLEHK+FK P + T +E+T +AS FH E+N ++ G+ DR VVQEV+KEIAQ Y+ A    Q   R +KVV+L EVDRLS+ AQ ALRRTMEKYTA CRLILCCN+ S+VI+P+RSRCLG+RV AP+ + IC IL  V KKE        L   IA  S RNLRRALLMLE CRVQ +PFS +Q++++P WEEYI  LA ++ +EQSP  L+ AR+M+YEL++NC+PS+VILK L REL+ +LDD LKHE+V WA++YEHR++ GSK+IFH EAF+AKFM LYK F++  +
Sbjct:    1 MLWVDKYRPTSLSSLDFHPEVTKRLSNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYGDGALKVRLEHKSFKAPNRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQEVLKEIAQ-YHLADTNSQ---RPFKVVLLMEVDRLSKNAQHALRRTMEKYTATCRLILCCNNPSKVIDPLRSRCLGVRVGAPTMDDICTILQGVCKKEGLDYC-APLGKEIALKSERNLRRALLMLETCRVQSYPFSPDQQIQLPAWEEYICSLAKVVLQEQSPAGLLKAREMIYELISNCVPSEVILKVLCRELMSRLDDDLKHELVQWASYYEHRMQRGSKDIFHFEAFLAKFMTLYKKFLLELY 351          
BLAST of EWM26298.1 vs. NCBI_GenBank
Match: gi|567969375|gb|ETK94467.1| (hypothetical protein L915_02498 [Phytophthora parasitica] >gi|567997765|gb|ETL47844.1| hypothetical protein L916_02469 [Phytophthora parasitica] >gi|570959462|gb|ETP24441.1| hypothetical protein F441_02573 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 442.965 bits (1138), Expect = 7.113e-153
Identity = 211/356 (59.27%), Postives = 273/356 (76.69%), Query Frame = 0
Query:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSEDGEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRT-IELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGRAYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAEQEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTF 355
            MLWVDK+RPT+L+ +D+H ++T RL  LS+  ++PHLL YGP GAGKKTRIMALLR ++G G  K RLEHK+FK P + T +E+T +AS FH E+N ++ G+ DR VVQEV+KEIAQ Y+ A    Q   R +KVV+L EVDRLS+ AQ ALRRTMEKYTA CRLILCCN+ S+VI+P+RSRCLG+RV AP+ + IC IL  V KKE        L   IA  S RNLRRALLMLE CRVQ +PFS +Q++++P WEE+I  LA ++ +EQSP  L+ AR+M+YEL++NC+PS+VILK L REL+ +LDD LKHE+V WA++YEHR++ GSK+IFH EAF+AKFM LYK F++  +
Sbjct:    1 MLWVDKYRPTSLSSLDFHPEVTKRLSNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYGDGALKVRLEHKSFKAPNRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQEVLKEIAQ-YHLADTNSQ---RPFKVVLLMEVDRLSKNAQHALRRTMEKYTATCRLILCCNNPSKVIDPLRSRCLGVRVGAPTMDDICTILQGVCKKEGLDYC-APLGKEIALKSERNLRRALLMLETCRVQSYPFSPDQQIQLPAWEEHICSLAKVVLQEQSPAGLLKAREMIYELISNCVPSEVILKVLCRELMSRLDDDLKHELVQWASYYEHRMQRGSKDIFHFEAFLAKFMTLYKKFLLELY 351          
BLAST of EWM26298.1 vs. NCBI_GenBank
Match: gi|397643532|gb|EJK75924.1| (hypothetical protein THAOC_02338 [Thalassiosira oceanica])

HSP 1 Score: 442.965 bits (1138), Expect = 1.649e-152
Identity = 218/377 (57.82%), Postives = 282/377 (74.80%), Query Frame = 0
Query:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSED-GEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRTIELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGR---------------AYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRV---QQHPFSAEQEVKVP--DWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTFG 356
            ML+VDKHRP+ L++++YH+ LT RL +L+ D G +PHLL YGP GAGKKTR+MALLR+VFG G E+ RLE +TF TPTKR +E+ ++ S +H E+   +AG  DR+V+Q+VIKE+A + N A+ +    G                +YKVV+L EVD+L+RQAQAALRRTMEKY+++CRLILCCN+ S+VI+PVRSRCLGIRVAAPS + I ++L  VS+KE+   L + LA+ IA+ S RNLRRALLMLE+C V    + P   + +  VP  DWE YIA LA  + +EQSP+ L+ AR+ LYELL NCIP+ +ILKTLL ELLP LDD +K EVVHWAAFYEHR+ +GSKEIFHLEAF+AKFMALYK ++ + FG
Sbjct:    1 MLFVDKHRPSRLSQLNYHDTLTQRLTSLAADPGGLPHLLLYGPSGAGKKTRVMALLREVFGCGAERLRLEKRTFTTPTKRQVEINMIQSNYHIEMAPGDAGLNDRYVIQDVIKEMAANKNIASVVTSKDGNDGEDDGHAKKKAAKASYKVVVLVEVDKLTRQAQAALRRTMEKYSSSCRLILCCNNPSKVIDPVRSRCLGIRVAAPSDDEIASVLKTVSRKENIK-LADELAINIARLSSRNLRRALLMLESCYVTTRDESPRELKADTPVPRTDWERYIAMLATGIVKEQSPKSLMAAREKLYELLINCIPAQIILKTLLMELLPVLDDTIKAEVVHWAAFYEHRIALGSKEIFHLEAFIAKFMALYKKYLNDLFG 376          
BLAST of EWM26298.1 vs. NCBI_GenBank
Match: gi|301092501|ref|XP_002997106.1| (replication factor C subunit 3 [Phytophthora infestans T30-4] >gi|262111642|gb|EEY69694.1| replication factor C subunit 3 [Phytophthora infestans T30-4])

HSP 1 Score: 441.81 bits (1135), Expect = 2.556e-152
Identity = 210/356 (58.99%), Postives = 271/356 (76.12%), Query Frame = 0
Query:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSEDGEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRT-IELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGRAYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAEQEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTF 355
            MLWVDK+RPT+L+ +D+H ++T RL  LS+  ++PHLL YGP GAGKKTRIMALLR ++G G  K RLEHK+FK P + T +E+T +AS FH E+N ++ G+ DR VVQEV+KEIAQ Y+ A        R +KVV+L EVDRLS+ AQ ALRRTMEKYTA CRLILCCN+ S+VI+P+RSRCLG+RV AP+ + IC IL  V  KE        L   IA  S RNLRRALLMLE CRVQ +PFS +Q++++P WEEYI  LA ++ +EQSP  L+ AR+M+YEL++NC+PS+VILK L REL+ +LDD LKHE+V WA++YEHR++ GSK+IFH EAF+AKFM LYK F++  +
Sbjct:    1 MLWVDKYRPTSLSSLDFHPEVTKRLSNLSQSSDLPHLLVYGPSGAGKKTRIMALLRALYGDGALKVRLEHKSFKAPNRSTKVEITTVASNFHIEMNPSDVGNNDRLVVQEVLKEIAQ-YHLADTNAH---RPFKVVLLMEVDRLSKNAQHALRRTMEKYTATCRLILCCNNPSKVIDPLRSRCLGVRVGAPTTDDICTILQGVCSKEGLDYC-APLGKEIALKSERNLRRALLMLETCRVQNYPFSPDQQIQLPAWEEYICSLAKVVLQEQSPAGLLKAREMIYELISNCVPSEVILKVLCRELMSRLDDDLKHELVQWASYYEHRMQRGSKDIFHFEAFLAKFMTLYKKFLLELY 351          
BLAST of EWM26298.1 vs. NCBI_GenBank
Match: gi|813157861|ref|XP_012202279.1| (hypothetical protein SPRG_07604 [Saprolegnia parasitica CBS 223.65] >gi|641532883|gb|KDO26890.1| hypothetical protein SPRG_07604 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 440.269 bits (1131), Expect = 1.014e-151
Identity = 212/356 (59.55%), Postives = 274/356 (76.97%), Query Frame = 0
Query:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSEDGEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTK-RTIELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGRAYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAEQEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTF 355
            MLWVD HRPT+L ++D+H  ++ RL+ L+   E+PHLL YGP GAGKKTR+MALL++++G    KTRLEHKTFK PT+ + +E+T +AS +H E+N ++ G+ DR VVQEVIKEIA  Y  A    Q   + +KVV+L EVD+LS+ AQ ALRRTMEKYT +CRLILCCNS S+VI+P+RSRCLGIR+ AP+H+ I ++L KV  KE+       LAM IA+ S RNLRRALLMLE CRVQ +PF A+Q + +P+WEEYIA LA  + +EQSP  L+ ARD LYELL+NCIPSD+ILK LLREL  +LDD LKHE+ H+AA+YEHR++ G K IFHLEAF+AKFM +YK F+++ +
Sbjct:    1 MLWVDAHRPTSLDRLDFHAPISDRLKRLAASEELPHLLIYGPSGAGKKTRVMALLKELYGPNALKTRLEHKTFKHPTQSKKVEITTVASNYHIEMNPSDVGNDDRLVVQEVIKEIAM-YRLADTNAQ---KQFKVVVLVEVDQLSKAAQHALRRTMEKYTGSCRLILCCNSPSKVIDPLRSRCLGIRIGAPTHDEIVSVLQKVCVKENLSFC-APLAMEIAKKSERNLRRALLMLETCRVQNYPFMADQPIPLPEWEEYIAGLAKDVLQEQSPGSLLKARDKLYELLSNCIPSDIILKVLLRELTCRLDDDLKHELAHYAAYYEHRLQCGQKAIFHLEAFLAKFMTIYKKFLLDFY 351          
BLAST of EWM26298.1 vs. NCBI_GenBank
Match: gi|953491834|emb|CEG45843.1| (replication factor c subunit 3 [Plasmopara halstedii])

HSP 1 Score: 439.113 bits (1128), Expect = 2.276e-151
Identity = 209/356 (58.71%), Postives = 272/356 (76.40%), Query Frame = 0
Query:    1 MLWVDKHRPTTLAKMDYHEDLTARLEALSEDGEVPHLLFYGPPGAGKKTRIMALLRQVFGAGVEKTRLEHKTFKTPTKRT-IELTILASAFHQEINAAEAGSGDRFVVQEVIKEIAQSYNPAAAMGQAGGRAYKVVILTEVDRLSRQAQAALRRTMEKYTAACRLILCCNSASRVIEPVRSRCLGIRVAAPSHESICAILNKVSKKESCGVLPEALAMRIAQTSGRNLRRALLMLEACRVQQHPFSAEQEVKVPDWEEYIAKLAVLLTEEQSPQRLVLARDMLYELLTNCIPSDVILKTLLRELLPKLDDQLKHEVVHWAAFYEHRVRIGSKEIFHLEAFVAKFMALYKAFVINTF 355
            MLWVDK+RPT+L+++DYH ++  RL  LS   ++PHLL YGP GAGKKTRIMALLR ++G G  K RLEHK+FK P + T +E+T +AS FH E+N ++ G+ DR VVQEV+KEIAQ Y+ A    Q   R +K+V+L EVDRLS+ AQ ALRRTMEKYTA CRLILCC + S+VI+P+RSRCLG+RV AP+ + IC IL+ V  KE        L   IA  S RNLRRALLMLE CRVQ +PFS +Q++++P WEEYI  LA ++ +EQSP  L+ AR+M+YEL++NC+PS+VILK L REL+ +LDD LKHE+V WA++YEHR++ GSK+IFH EAF+AKFM LYK F+++ +
Sbjct:    1 MLWVDKYRPTSLSELDYHPEVAKRLSNLSRCSDLPHLLVYGPSGAGKKTRIMALLRALYGDGALKVRLEHKSFKVPNRSTKVEITTVASNFHIEMNPSDVGNSDRLVVQEVLKEIAQ-YHLADTNAQ---RPFKIVLLMEVDRLSKNAQHALRRTMEKYTATCRLILCCTNPSKVIDPLRSRCLGVRVGAPTTDDICNILHNVCTKEGLDYC-APLGKEIALKSERNLRRALLMLETCRVQNYPFSPDQQIQLPAWEEYICSLAKVVLQEQSPAGLLKAREMIYELISNCVPSEVILKVLCRELMSRLDDDLKHELVQWASYYEHRMQRGSKDIFHFEAFLAKFMTLYKKFLLDLY 351          
The following BLAST results are available for this feature:
BLAST of EWM26298.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108304|gb|EWM26298.1|0.000e+0100.00replication factor c subunit 3 [Nannochloropsis ga... [more]
gi|676378035|ref|XP_009032296.1|1.521e-16664.33hypothetical protein AURANDRAFT_69595 [Aureococcus... [more]
gi|298714917|emb|CBJ27673.1|5.415e-16461.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|223998512|ref|XP_002288929.1|1.164e-16061.60replication factor C 37 KD subunit [Thalassiosira ... [more]
gi|675181949|ref|XP_008899859.1|7.479e-15459.55hypothetical protein PPTG_07433 [Phytophthora para... [more]
gi|567969375|gb|ETK94467.1|7.113e-15359.27hypothetical protein L915_02498 [Phytophthora para... [more]
gi|397643532|gb|EJK75924.1|1.649e-15257.82hypothetical protein THAOC_02338 [Thalassiosira oc... [more]
gi|301092501|ref|XP_002997106.1|2.556e-15258.99replication factor C subunit 3 [Phytophthora infes... [more]
gi|813157861|ref|XP_012202279.1|1.014e-15159.55hypothetical protein SPRG_07604 [Saprolegnia paras... [more]
gi|953491834|emb|CEG45843.1|2.276e-15158.71replication factor c subunit 3 [Plasmopara halsted... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4381rna4381Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications