EWM26300.1, cds4370 (CDS) Nannochloropsis gaditana

Overview
NameEWM26300.1
Unique Namecds4370
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:432122..432589 +
Alignment locationCM002463.1:432677..433156 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26300.1
Productubiquinone biosynthesis protein coq7
Orig transcript idgnl|cribi|Naga_100093g8.5097.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:432122..432589 +
CM002463.1supercontigCM002463.1:432677..433156 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0055114oxidation-reduction process
GO:0006744ubiquinone biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR009078Ferritin-like_SF
IPR011566Ubq_synth_Coq7
Homology
BLAST of EWM26300.1 vs. NCBI_GenBank
Match: gi|585108306|gb|EWM26300.1| (ubiquinone biosynthesis protein coq7 [Nannochloropsis gaditana])

HSP 1 Score: 644.81 bits (1662), Expect = 0.000e+0
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0
Query:    1 MLYRAISSWRRESMSLFTAGAKRRRRTIVPVGGIWSQTCNAGCVSTIMPASPQTGGSCVRSASFRRGYLPLSSRSALLGALGCSYPQPQVRLLGTAASLNARPSSPPQPPFDWIGLEEEKKIWGDFESNGEAVLVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI 315
            MLYRAISSWRRESMSLFTAGAKRRRRTIVPVGGIWSQTCNAGCVSTIMPASPQTGGSCVRSASFRRGYLPLSSRSALLGALGCSYPQPQVRLLGTAASLNARPSSPPQPPFDWIGLEEEKKIWGDFESNGEAVLVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI
Sbjct:    1 MLYRAISSWRRESMSLFTAGAKRRRRTIVPVGGIWSQTCNAGCVSTIMPASPQTGGSCVRSASFRRGYLPLSSRSALLGALGCSYPQPQVRLLGTAASLNARPSSPPQPPFDWIGLEEEKKIWGDFESNGEAVLVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI 315          
BLAST of EWM26300.1 vs. NCBI_GenBank
Match: gi|1057674329|ref|WP_068949275.1| (demethoxyubiquinone hydroxylase family protein [Polynucleobacter wuianus] >gi|1035437495|gb|ANJ00272.1| hypothetical protein A8O14_09410 [Polynucleobacter wuianus])

HSP 1 Score: 142.895 bits (359), Expect = 3.922e-38
Identity = 85/189 (44.97%), Postives = 114/189 (60.32%), Query Frame = 0
Query:  128 SNGEAV-LVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI 315
            SN  +V L ++LRSDHAGETGA+YIY G  A +K     R   E  +F + H ATE+EHL   E + +   +S LL  WRI+GW  G  P L G   A++ T++AVETFVE HYQ+QI  LQ +G   +LLKLL  C  +E++HK +A+++         V  RP   RLW  +VG GS  AV + R+I
Sbjct:    8 SNAYSVYLERELRSDHAGETGAIYIYKGIIAIVKL----RKDQELISFAKHHGATEAEHLQLIESIFEAKHRSCLLGPWRIAGWLTGAIPALFG-RKAVYATIDAVETFVEQHYQQQIEYLQKNGSHDDLLKLLIRCQADEINHKNEARSKV--------VSPRPLTLRLWCALVGGGSAVAVLLARQI 183          
BLAST of EWM26300.1 vs. NCBI_GenBank
Match: gi|1211928517|ref|WP_088527749.1| (ubiquinone biosynthesis protein COQ7 [Polynucleobacter sp. MWH-K35W1] >gi|1209840945|gb|OWS71341.1| hypothetical protein CBI30_07860 [Polynucleobacter sp. MWH-K35W1])

HSP 1 Score: 142.51 bits (358), Expect = 4.950e-38
Identity = 81/182 (44.51%), Postives = 110/182 (60.44%), Query Frame = 0
Query:  134 LVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI 315
            L ++LRSDHAGETGA+YIY G  A  K     R   E  +F + H ATE+EHL   E + +   +S+LL  WRI+GW  G  P L G   A++ T++AVETFVE HYQ+QI  LQ +G   +LLKLL  C  +E++HK +A+++         V  RP   RLW  +V +GS  AV + R+I
Sbjct:   16 LERELRSDHAGETGAIYIYKGIIAIAKL----RKDQELISFAKHHGATEAEHLQLIESIFEAKHRSRLLVPWRIAGWLTGAIPALFG-RKAVYATIDAVETFVEQHYQQQIEYLQKNGSHDDLLKLLMRCQADEINHKNEARSKV--------VSPRPLTLRLWCALVRSGSAVAVLLARQI 184          
BLAST of EWM26300.1 vs. NCBI_GenBank
Match: gi|1180043462|ref|WP_083564306.1| (hypothetical protein [Polynucleobacter sp. MWH-Adler-W8])

HSP 1 Score: 142.51 bits (358), Expect = 5.644e-38
Identity = 84/189 (44.44%), Postives = 113/189 (59.79%), Query Frame = 0
Query:  128 SNGEAV-LVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI 315
            SN  +V L ++LRSDHAGETGA+YIY G  A  K     R   E  +F + H ATE+EHL   E + +   +S+LL  WRI+GW  G  P L G   A++ T++AVETFVE HYQ+QI  LQ +G   +LLKLL  C  +E++HK +A+++         V   P   RLW  +VG GS  AV + R+I
Sbjct:    8 SNAYSVYLERELRSDHAGETGAIYIYKGIIAIAKL----RKDQELISFAKHHGATEAEHLQLIESIFEAKHRSRLLGPWRIAGWLTGAIPALFG-RKAVYATIDAVETFVEQHYQQQIEYLQKNGSHDDLLKLLMRCQADEINHKNEARSKV--------VSPMPLTLRLWCALVGGGSVVAVLLARQI 183          
BLAST of EWM26300.1 vs. NCBI_GenBank
Match: gi|1111350450|gb|OJI04027.1| (hypothetical protein AOC28_11000 [Polynucleobacter sp. MWH-Adler-W8])

HSP 1 Score: 139.043 bits (349), Expect = 6.159e-37
Identity = 79/178 (44.38%), Postives = 106/178 (59.55%), Query Frame = 0
Query:  138 LRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI 315
            +RSDHAGETGA+YIY G  A  K     R   E  +F + H ATE+EHL   E + +   +S+LL  WRI+GW  G  P L G   A++ T++AVETFVE HYQ+QI  LQ +G   +LLKLL  C  +E++HK +A+++         V   P   RLW  +VG GS  AV + R+I
Sbjct:    1 MRSDHAGETGAIYIYKGIIAIAKL----RKDQELISFAKHHGATEAEHLQLIESIFEAKHRSRLLGPWRIAGWLTGAIPALFG-RKAVYATIDAVETFVEQHYQQQIEYLQKNGSHDDLLKLLMRCQADEINHKNEARSKV--------VSPMPLTLRLWCALVGGGSVVAVLLARQI 165          
BLAST of EWM26300.1 vs. NCBI_GenBank
Match: gi|653033905|ref|WP_027285646.1| (ubiquinone biosynthesis protein COQ7 [Rubritepida flocculans])

HSP 1 Score: 138.658 bits (348), Expect = 1.042e-36
Identity = 80/182 (43.96%), Postives = 107/182 (58.79%), Query Frame = 0
Query:  134 LVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI 315
            L+ +LRSDHAGETGAV IY G  A  +        AE R F + H ATE  HL   E +L P  +S+LLP WR++GW  G  P L G   A++ T+++VE+FV+ HYQ+Q+  L     FPEL  +L  C +EEVHH+++A+ R   G   G V       R W  +VG GS AAVA  R++
Sbjct:    8 LIAELRSDHAGETGAVMIYRGILALCR-------DAELRRFAERHMATEQGHLRLLEEVLPPARRSRLLPLWRVAGWLTGAIPALFG-PRAVYATIDSVESFVDHHYQQQLDRLDAEAIFPELRAMLAKCQEEEVHHRDEARER--HGGVVGAV------LRGWGALVGWGSEAAVAAARRL 173          
BLAST of EWM26300.1 vs. NCBI_GenBank
Match: gi|1099598006|emb|SFK50512.1| (ubiquinone biosynthesis monooxygenase Coq7 [Roseomonas stagni DSM 19981])

HSP 1 Score: 135.191 bits (339), Expect = 4.623e-35
Identity = 81/182 (44.51%), Postives = 102/182 (56.04%), Query Frame = 0
Query:  134 LVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI 315
            LV +LRSDHAGETGAV IY G  A  +  G   F+       + H ATE  HL     LL     S+LLP WR++GW  G  P+L G   A++ T++AVETFV+ HYQ+QI  L   G   E+  LL HC  EEVHH+++A+       G         L R WAW+VG GS AAV   R+I
Sbjct:   25 LVGELRSDHAGETGAVMIYRGILAVCRDPGVVDFA-------RRHMATEQGHLDLLNVLLPAHQHSRLLPIWRVAGWLTGALPSLFG-PRAVYATIDAVETFVDHHYQQQIDRLDAEGIHAEIRALLAHCQAEEVHHRDEARDAATAPAGA--------LLRAWAWLVGNGSAAAVHAARRI 190          
BLAST of EWM26300.1 vs. NCBI_GenBank
Match: gi|167535702|ref|XP_001749524.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163771916|gb|EDQ85575.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 134.806 bits (338), Expect = 3.338e-34
Identity = 83/188 (44.15%), Postives = 107/188 (56.91%), Query Frame = 0
Query:  134 LVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSG---RFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPR---LARLWAWVVGTGSRAAVAVCRKI 315
            LVQ LRSDHAGE  AVYIY GA+ A +             FV  H  TE  HL YFE LL+   +S L P W ++G+ LGF PT L G  AL+ T+ AVET+VE HY   I PL   G    +P+L   L+  C +EV H  DA  R+    GF ++ED  +   LAR W+++V  GS  AVA+ ++I
Sbjct:   76 LVQALRSDHAGELAAVYIYRGARDAARLRP---LPEGVHHFVNQHLETERGHLHYFETLLERRERSWLSPVWLVAGYALGFLPT-LAGPHALYTTIHAVETYVEEHYNHHITPLLARGPKNAYPKLTAALQEFCSDEVEHAVDAGDRY----GFRQLEDDLQGITLARAWSFIVRHGSATAVAIAKQI 255          
BLAST of EWM26300.1 vs. NCBI_GenBank
Match: gi|941917963|gb|ALK87756.1| (2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Limnohabitans sp. 63ED37-2])

HSP 1 Score: 131.339 bits (329), Expect = 5.744e-34
Identity = 82/182 (45.05%), Postives = 107/182 (58.79%), Query Frame = 0
Query:  134 LVQDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCSGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI 315
            +V+++RSDHAGETGAVYIY G  A  +W    R  A+  AF + H  TE+EHL   E  L     S+LL  W I+GW  G  P L G   A++ T+ AVETFV+ HYQ+QI  LQ  G    LL LL+ C  +E HH+++A A  L G        +  L RLW  VVG+GS AAV + R++
Sbjct:    1 MVREMRSDHAGETGAVYIYKGITAVARW----RQDAQLLAFAKEHGDTEAEHLRLLEAWLPAYQPSRLLVPWCIAGWLTGALPALFG-RRAVYGTIAAVETFVDVHYQQQIDHLQVHGGPEGLLPLLQRCQADEQHHRDEAAA--LAG------PKKSWLLRLWCAVVGSGSAAAVVLARRV 169          
BLAST of EWM26300.1 vs. NCBI_GenBank
Match: gi|929666410|gb|KPF49366.1| (hypothetical protein IP80_07055 [beta proteobacterium AAP65] >gi|929712300|gb|KPF94155.1| hypothetical protein IP87_19620 [beta proteobacterium AAP121])

HSP 1 Score: 131.724 bits (330), Expect = 7.406e-34
Identity = 81/188 (43.09%), Postives = 105/188 (55.85%), Query Frame = 0
Query:  136 QDLRSDHAGETGAVYIYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSKLLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQC--------SGRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWVVGTGSRAAVAVCRKI 315
            Q+LR+DHAGE GAV IY G  A  +        A+ RAF Q H  TE +HLA  E ++    +S+LLP WR +GW  G  P L  G  A++ T+EAVETFV+ HY  Q+  +          + + P L  LL  C  +EV H++DA+ R    RG   V     +ARLWA VVG+GS AAV V R I
Sbjct:   14 QELRTDHAGEAGAVMIYRGVLALAR-------DADLRAFAQHHLQTEQQHLALIEGVVPRAQRSRLLPLWRAAGWLTGALPALF-GPRAVYATIEAVETFVDTHYAAQVVMIDALPPGEVPSAAQVPALRDLLETCRLDEVAHRDDARTR----RGAAPVG---VVARLWAAVVGSGSAAAVRVSRHI 186          
The following BLAST results are available for this feature:
BLAST of EWM26300.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108306|gb|EWM26300.1|0.000e+0100.00ubiquinone biosynthesis protein coq7 [Nannochlorop... [more]
gi|1057674329|ref|WP_068949275.1|3.922e-3844.97demethoxyubiquinone hydroxylase family protein [Po... [more]
gi|1211928517|ref|WP_088527749.1|4.950e-3844.51ubiquinone biosynthesis protein COQ7 [Polynucleoba... [more]
gi|1180043462|ref|WP_083564306.1|5.644e-3844.44hypothetical protein [Polynucleobacter sp. MWH-Adl... [more]
gi|1111350450|gb|OJI04027.1|6.159e-3744.38hypothetical protein AOC28_11000 [Polynucleobacter... [more]
gi|653033905|ref|WP_027285646.1|1.042e-3643.96ubiquinone biosynthesis protein COQ7 [Rubritepida ... [more]
gi|1099598006|emb|SFK50512.1|4.623e-3544.51ubiquinone biosynthesis monooxygenase Coq7 [Roseom... [more]
gi|167535702|ref|XP_001749524.1|3.338e-3444.15hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|941917963|gb|ALK87756.1|5.744e-3445.052-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy... [more]
gi|929666410|gb|KPF49366.1|7.406e-3443.09hypothetical protein IP80_07055 [beta proteobacter... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4380rna4380Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications