rna4380, rna4380 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4380
Unique Name	rna4380
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3028
Alignment location	CM002463.1:431846..433211 +

Link to JBrowse

Properties


Property Name	Value
Product	ubiquinone biosynthesis protein coq7
Orig transcript id	gnl\|cribi\|Naga_100093g8.5097.mrna
Orig protein id	gnl\|cribi\|Naga_100093g8.5097
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:431846..433211 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100093g8	gene4224	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4380	rna4380-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26300.1	cds4370	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:431846..433211+
coding sequence from alignment at CM002463.1:431846..433211+

mRNA sequence

>rna4380 ID=rna4380|Name=rna4380|organism=Nannochloropsis gaditana|type=mRNA|length=3028bp
AACACGCGAAGGCGAAATTTGAACACCTTATTTTCCTATCAGACCACAGA
TTTTAGGACTACGACATGGGGCCCTTCGCATTTCCGTCGCTGCCTTTGGC
AAAGCGCGGACCGAACGGGTTGCCTACGACTACGTCGAAGGACGCTTTGC
TGCTTGCCACCGGGGTCGTGGGAACAGCGTTCGTAGCTTCGCACGTGTAT
TTTTTCCTTCGGAGCCGAAGCAAGCGAGTCAATGCATCGAAGAGTAGCAC
CTTGTGTGCATTTTTACGTTTGCTAGGGCTGAGCAACAAAGCAGAGGTCC
ACTACGATAAGGCCACCGGGAGACTTTGTTATCCTTCTACAGCCAGAGTC
CCAGTCGTTGATACCTTGCATGGGACGGCAGTACCTGACCCCTACCGCTG
GCTAGAAGATCCTGACGCCAAAGATGTGCAGAAGTGGGTGAATGCGCAAA
ATAAAGTTACTGACGCGTACTTCAAGGCCTGCTTGCAAGAGGACAAGCTC
AAATTTCAGTCTCGGATGAGCGAGTTATTTCACTATGATAAATTTAGCTG
TGTCTGGCAAAAGGGCAGCCGATATTTTTTTTACAAGAAGACCGGCTTAC
AAAACCAAGCCGTCTTGTACACCCAAGACACTTTAAGCTCGCCACCTCGC
ATGCTTATTGACCCAAACACTCTCCGTGCGGACGGGACTGCCGCCTTATC
CTCCGTGCACGTCACTGAGGATGGAAACACTCTGGCCTACATGATCTCCT
TAAGCGGCTCAGACTGGCAGACTATTTACACCATGGACGTGGTCACAGGT
AAGGCCTTGCCGGACGAGGTCCACTGGTGCAAGTACTCGAGTGTGACGTG
GACCCGGGATGGACAGGGCTTTTTTTACAACAAGTACTTGGCACCTACTT
CCAAGGGGAAGGAGGATGGCGCCGGCACAGAGACCGACGCCGCTGCCAGT
CAAATGGTTTACTACCATCGTCTGGGCACGGATGAGAAGGAGGATGTCCT
GTTCTGGCACGACCCATCGCAGCCGAAGTGGATGTACGGCGTGGAGATAG
CGGATGACGGGGAGACCCTGCTCCTAACGAGCAACGACAGCTGCGACCCT
GTCAATCGATTGTACTACTTTGACCTCCGGGGCTTCGACGGCAGGGACAT
GAAAAGTATCGGTCGTTGCGTGCGCTTGGTGGACACCCTGGCGCACAGGT
ACGACTACGTCACCAACGAGGGCCGGAAATTTTATTTCTTGACCAACTCT
GGTGGGGCTGGAAACTACAAAATAGTACGGGCGGAGCTTCCCGCACCGGG
CGACGTCCTGGAGGAGGACAAAGATGCCTTGGCCAAGTCCGTGACTTTCG
TGGACGTGGTGCCAGAGGATAGCAAGGGCGGGGTCCTGACCCGGGTCCAG
CCCGTGGCGGGCCGCTTCTTGCTGCTTTCCTACCTGCGAAATGTGACCGA
CGAGCTCGAGCTTTGTTTTCTCGACAGAGAACCCGTGGTGGAAGCCAAGG
GCGGACAAGGGAAGGCAGAGGGGCCGGGCGCCATCTCTCGGGGGCCAGCC
CGCTTACCTGTGTCCTTGCCAGGGACAGGCACGGTAGATAGCCTCTGCGC
CCGAAAGGAGACGGCGGAGTTTTTCTTCAAATTCAGTAGTTTCAGCGACC
CGGGAACAGTTTACCGAGCCGAAATTCGATTTCCAGAAGCCAGCGCCGAT
GCGGCTGGGAAGGGAAGTGGTGGAGGGGAAGGTCAACAAGCCACGAGAGG
ACAGGAGGGCACCAAAGCAGGCGGAAGCAGGTCACCGGAATCTTCGAAGG
CGAAGGGAAAGAAAAAGAAAGGGGGCAAGAAGGAGAAAGCGAGCACGCAG
TCGGACAAGAGGGAGGGTAAGGACAGCGAGGCGTCAGACTTGCTGGCTCT
GGTGGAGGTCCCGAAGGCCGTGCTGTTCCGTGCCGTGATCCCGGGCTTGA
ATCCCGAGGAGTTCACGACCACCCAAGTGTTTTATCAGAGCAAGGACGGA
ACGAAGGTGCCCATGTTCTTGGTGCGTGGGGCGGAGGGGTCTAAGATGAA
TGGCGGGCCTGAGCGCGCGCGGCCGACCTTTTTGTATGGCTACGGTGGGT
TCAACATCAGCATTCGACCCTCCTTCAGCCTGTCCCGCTTACTCTTCATC
CAGCACTATGGTGGGTTGGTGGCAGTCGCGAACATCCGGGGGGGCGGGGA
GTATGGAGAAAATTGGCACACCGGGGGCACCAAGGGGCGCAAGCAGAATG
TGTTTGACGACTTTGTGGCGGCGGCCGAGTATCTGATCAAGGAAGGGCTC
TCCACACCAGCCCAGCTTGCGATCAATGGAGGTTCCAACGGAGGGTTGCT
CGTTGCTGCCTGCATCAACCAACGACCGGATTTGTTCGGCGCGGCGGTCG
CTCAAGTCGGCGTCTTGGACATGTTGCGCTTCCACAAATTCACGATTGGA
TACGCCTGGTGCTCCGACTACGGAAACGCGGACGAGGACGAAGCGGACTT
CAAAAATTTGCTCGGCTACTCTCCGATCCACAATGTGAACAAAGAAGAAG
GTGTGACATACCCGGCCACCCTCATTACTACTGGAGATCATGACGATCGT
GTGGTCCCTCTGCACAGCTACAAGTACATTGCAGCCCTTCAGCACGCGCA
TGGGGATAATCCAGCTCAGACCCGGCCTTTGATAATCAGAATCGATACTA
AAGCTGGCCATGGCGCGGGGAAGCCGACTTCCAAAGTGATTGAAGAGCAG
AGCGATGTGATGGCTTTCATCGCAAAGAACACAGGAGCGACCTGGCAGGA
TTAAGAGTGCAGGCAGGAGAATGTGCGAAAAGGAAAGTGGATAGGAAGTA
ACGAAGAAGCGACAAAAATAAGATTGGGAATGATGGTGGCGATGTGGGTG
AGTGTACGCCTTTAATACATTAAAGAAAATATAGAGGCACTATTTCTCTT
GGAATAGCAAATAACAAATAACAACTGTGTCGATAAAATTAAAAAGCAAT
GTCGACATCGCATCTGCGATAATGCGCA

protein sequence of rna4380

>rna4380-protein ID=rna4380-protein|Name=rna4380|organism=Nannochloropsis gaditana|type=polypeptide|length=315bp
MLYRAISSWRRESMSLFTAGAKRRRRTIVPVGGIWSQTCNAGCVSTIMPA
SPQTGGSCVRSASFRRGYLPLSSRSALLGALGCSYPQPQVRLLGTAASLN
ARPSSPPQPPFDWIGLEEEKKIWGDFESNGEAVLVQDLRSDHAGETGAVY
IYAGAQAAMKWGGGGRFSAESRAFVQTHHATESEHLAYFERLLDPGMKSK
LLPFWRISGWCLGFFPTLLGGESALFLTVEAVETFVEAHYQEQIYPLQCS
GRFPELLKLLRHCCDEEVHHKEDAQARWLQGRGFGEVEDRPRLARLWAWV
VGTGSRAAVAVCRKI

mRNA from alignment at CM002463.1:431846..433211+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4380 ID=rna4380|Name=rna4380|organism=Nannochloropsis gaditana|type=mRNA|length=1366bp|location=Sequence derived from alignment at CM002463.1:431846..433211+ (Nannochloropsis gaditana)
TGCTGTGATTTTTTAACCATTAGCTCAGGCTGCCTCAGGTTATTCCTGAA
GCCGGAGGTAGTTATGAAGGTGCTTTGTCATATTCAAAGGTCTTTGCAGC
GGTACACCGTGTTAAAAACTAGACACTTCATCCGTAGTCGCCCAGTGATG
TACCAtttcatttcctttctcctcagaCTAGGTGTTGCTTGCCTTGTCAG
CATCTGCGCTCCACTTTGCGGGTAGCCGGTGCAACACGTCATCGCTCTCA
TTTGACATCGGTGGGGACCACAAAGGATGCTGTACCGTGCCATAAGCAGC
TGGCGGAGGGAGTCAATGAGCCTTTTCACTGCTGGCGccaagaggcggag
gagaacaATTGTACCGGTCGGGGGCATTTGGTCTCAAACCTGCAACGCAG
GGTGTGTGTCGACTATCATGCCTGCCAGTCCGCAAACGGGAGGATCTTGC
GTTCGATCGGCATCATTTCGCCGTGGATACTTGCCCCTGTCTTCCCGGTC
CGCTCTCCTCGGCGCCTTGGGCTGTTCCTACCCCCAACCTCAAGTGCGGC
TCCTTGGGACGGCGGCGAGCCTGAATGCACGACCGTCTTCACCTCCGCAA
CCCCCCTTCGATTGGATaggcttggaggaagagaaaaaaatatgGGGCGA
TTTCGAAAGCAATGGCGAAGCTGTTTTGGTGCAAGATCTGCGAAGTGACC
ATGCGGGAGAGACCGGTGCGGTGTACATCTACGCAGGAGCCCAAGTACGT
GAATTGGGAGGCCGTCAGACACCACCATTCGTGTGTGATATTTAACGTGT
AATCTATATTTTTGGTCACTATATTGTACAGGCGGCCATGAAatggggag
gtgggggccgCTTCTCGGCGGAATCCCGGGCCTTCGTTCAGACGCACCAT
GCCACAGAGTCCGAGCACTTGGCTTACTTTGAAAGACTCCTGGACCCAGG
CATGAAATCCaagctcctccctttctggcGAATCAGTGGCTGGTGCTTGG
GATTCTTTCCGACATTGTTGGGTGGGGAATCGGCACTGTTTTTGACCGTG
GAGGCGGTCGAGACCTTCGTGGAAGCACACTACCAGGAGCAGATCTACCC
TTTGCAGTGCAGTGGGCGTTTTCCTGAGCTTCTCAAACTCTTGAGGCATT
GCTGCGATGAAGAAGTACACCACAAAGAAGACGCACAGGCCCGTTGGCTG
CAAGGGCGGGGCTttggggaggttgaggacAGGCCCCGCCTTGCGCGCTT
GTGGGCATGGGTGGTGGGAACGGGGAGTAGGGCGGCTGTGGCCGTGTGCC
GCAAGATATGAGGATACTGACATTTGAAATATAGAAAAATAAGGCAGGTG
AAATAGTTCTGGGCAA

Coding sequence (CDS) from alignment at CM002463.1:431846..433211+

>rna4380 ID=rna4380|Name=rna4380|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at CM002463.1:431846..433211+ (Nannochloropsis gaditana)
ATGCTGTACCGTGCCATAAGCAGCTGGCGGAGGGAGTCAATGAGCCTTTT
CACTGCTGGCGccaagaggcggaggagaacaATTGTACCGGTCGGGGGCA
TTTGGTCTCAAACCTGCAACGCAGGGTGTGTGTCGACTATCATGCCTGCC
AGTCCGCAAACGGGAGGATCTTGCGTTCGATCGGCATCATTTCGCCGTGG
ATACTTGCCCCTGTCTTCCCGGTCCGCTCTCCTCGGCGCCTTGGGCTGTT
CCTACCCCCAACCTCAAGTGCGGCTCCTTGGGACGGCGGCGAGCCTGAAT
GCACGACCGTCTTCACCTCCGCAACCCCCCTTCGATTGGATaggcttgga
ggaagagaaaaaaatatgGGGCGATTTCGAAAGCAATGGCGAAGCTGTTT
TGGTGCAAGATCTGCGAAGTGACCATGCGGGAGAGACCGGTGCGGTGTAC
ATCTACGCAGGAGCCCAAGCGGCCATGAAatggggaggtgggggccgCTT
CTCGGCGGAATCCCGGGCCTTCGTTCAGACGCACCATGCCACAGAGTCCG
AGCACTTGGCTTACTTTGAAAGACTCCTGGACCCAGGCATGAAATCCaag
ctcctccctttctggcGAATCAGTGGCTGGTGCTTGGGATTCTTTCCGAC
ATTGTTGGGTGGGGAATCGGCACTGTTTTTGACCGTGGAGGCGGTCGAGA
CCTTCGTGGAAGCACACTACCAGGAGCAGATCTACCCTTTGCAGTGCAGT
GGGCGTTTTCCTGAGCTTCTCAAACTCTTGAGGCATTGCTGCGATGAAGA
AGTACACCACAAAGAAGACGCACAGGCCCGTTGGCTGCAAGGGCGGGGCT
ttggggaggttgaggacAGGCCCCGCCTTGCGCGCTTGTGGGCATGGGTG
GTGGGAACGGGGAGTAGGGCGGCTGTGGCCGTGTGCCGCAAGATATGAAT
GCTGTACCGTGCCATAAGCAGCTGGCGGAGGGAGTCAATGAGCCTTTTCA
CTGCTGGCGccaagaggcggaggagaacaATTGTACCGGTCGGGGGCATT
TGGTCTCAAACCTGCAACGCAGGGTGTGTGTCGACTATCATGCCTGCCAG
TCCGCAAACGGGAGGATCTTGCGTTCGATCGGCATCATTTCGCCGTGGAT
ACTTGCCCCTGTCTTCCCGGTCCGCTCTCCTCGGCGCCTTGGGCTGTTCC
TACCCCCAACCTCAAGTGCGGCTCCTTGGGACGGCGGCGAGCCTGAATGC
ACGACCGTCTTCACCTCCGCAACCCCCCTTCGATTGGATaggcttggagg
aagagaaaaaaatatgGGGCGATTTCGAAAGCAATGGCGAAGCTGTTTTG
GTGCAAGATCTGCGAAGTGACCATGCGGGAGAGACCGGTGCGGTGTACAT
CTACGCAGGAGCCCAAGCGGCCATGAAatggggaggtgggggccgCTTCT
CGGCGGAATCCCGGGCCTTCGTTCAGACGCACCATGCCACAGAGTCCGAG
CACTTGGCTTACTTTGAAAGACTCCTGGACCCAGGCATGAAATCCaagct
cctccctttctggcGAATCAGTGGCTGGTGCTTGGGATTCTTTCCGACAT
TGTTGGGTGGGGAATCGGCACTGTTTTTGACCGTGGAGGCGGTCGAGACC
TTCGTGGAAGCACACTACCAGGAGCAGATCTACCCTTTGCAGTGCAGTGG
GCGTTTTCCTGAGCTTCTCAAACTCTTGAGGCATTGCTGCGATGAAGAAG
TACACCACAAAGAAGACGCACAGGCCCGTTGGCTGCAAGGGCGGGGCTtt
ggggaggttgaggacAGGCCCCGCCTTGCGCGCTTGTGGGCATGGGTGGT
GGGAACGGGGAGTAGGGCGGCTGTGGCCGTGTGCCGCAAGATATGA

Synonyms

Publications