rna4370, rna4370 (mRNA) Nannochloropsis gaditana

Overview
Namerna4370
Unique Namerna4370
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1059
Alignment locationCM002463.1:405827..406620 +

Link to JBrowse

Properties
Property NameValue
Productphosphopantothenoylcysteine decarboxylase
Orig transcript idgnl|cribi|Naga_100093g19.5110.mrna
Orig protein idgnl|cribi|Naga_100093g19.5110
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:405827..406620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100093g19gene4214Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4370rna4370-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26313.1cds4360Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4370 ID=rna4370|Name=rna4370|organism=Nannochloropsis gaditana|type=mRNA|length=1059bp
ATGCTTCTATGTTGGCTGAGACAGGGACTAGGGGACCAGAGGGCATTATT
TCTGGGTGTGAGAGCGGTTGCCACCCTCACCACAGGAACATCAGCCGTTC
CAGCACCACCAGCAAGAACTACAAAAAGGACACTACCAGAATGTGTGGCA
TCAAAAAGAAGCTTTAGAACATCCGCAATAAGGACATCTGAAGCCGATAC
AGCCCCATCCTCCCCAACTCCACCTTCATCGTCTGACAAAGGAAAAAAAG
GAGGCCTCAAACCCAAAAAAAAGAAAGGGAAACGGCCTTCATCAACGGCA
GCATACTTGCAGTCGCGCGCGGCGCAGTTGTCAAGGCACGAAGCTGCTGC
TAAAGAAGCCAATTTGCCGTGGCGCATCGTGGCTGCAAGTATTGTGGAAC
GTCATCCCATCATCATGAAAGAACCCGAGGACTGGGAGGCTGCGTACATG
GAAATGCAAGAGGAGATCGCAAAGCATGGCAAGGTCTTTCCCCCGGAGCT
GAATCTGATGGGCCAAGCCGCTGAGCTCGATCGATCCGACGACGAAGTCC
TGCCCGAGCTCCCTTTCAAGCTCGCCCCCAGGGTGACGAAGGCGGACCGT
CTCAACGACCGGACGACGCTAAATCGTGCCTTGGCAGAACGTCTGTTCCT
CCTGATCCGAGGACCCGTGACGCGGGGAAGGTGGGACTTGCCCATGGCCG
TCTTGGAGGGCGGGGGAAAGGGCGGGGACATGAAGGGGCTATCCATGAGA
AAGACGCACGAGGCAACGGTCAGAAGATTTTTGGGGGATAAATTCGAGGC
TTATGTGCCGTCCAACGCCCCCGTGGGCATGCACTGGCGGGTTCCTTCCG
AGCCGAGCACTGGGAAGACAGGAGGGGAGCAGACTTACGGCGACAAGGTC
TTCTTTTACAGGGCACAGCACCTGAAAGGGCGGGGCAAAGTCGTGGGAGA
GGGAGTGGAGGAATTCGTGTGGGTAACGAGGGAGGAGATGGGCGAGTACT
TGCCCCAGGCGTCGGTGGAAGAGAAGGAATATGCCGAGTTGCTGACGAAC
ATATTGTAG
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protein sequence of rna4370

>rna4370-protein ID=rna4370-protein|Name=rna4370|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MSAARHRSQRRPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAA
RHFWECAKVYNPAAWASFQELGGRVEVLEDKNEWDAWTAMGDPVLHIQLR
DWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNT
HMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRA
VQDQLQAYLGRDASGDGREGST
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mRNA from alignment at CM002463.1:405827..406620+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4370 ID=rna4370|Name=rna4370|organism=Nannochloropsis gaditana|type=mRNA|length=794bp|location=Sequence derived from alignment at CM002463.1:405827..406620+ (Nannochloropsis gaditana)
ATGTCTGCGGCACGGCATCGTTCTCAGAGGCGACCAAGAGTCCTTCTTGC
CGCCACGGGAAGTGTCGCGACGGTCAAAATTCCGGAATTGGCGCTGCGCC
TATCCCTTGGCGCTGGCGCCGAGGTGAAGGTCGCTCTCACGAAGGCAGCA
CGGCACTTCTGGGAGTGTGCGAAGGTGTACAACCCCGCAGCATGGGCCTC
TTTCCAGGaactgggaggaagggtggaagtACTGGAGGACAAGAATGAGT
GGGACGCCTGGACTGCAATGGGGGACCCGGTCTTACACATCCAGCTTCGG
GACTGGGCTGACCTTCTCCTGATCGCCCCCTTATCGGCCAATACACTGGG
GAAACTGGCTCACGGCCTCTGCGATAACCTCGTTACGAGCATTGTTCGGG
CTTGGGATTTAAAGCAGAAGCCTGTGCTATTGGCTCCCGCCATGAACACG
CACATGTGGGAGCATCCTTTCACAGCACAGCAACTTCGGATGCTGCAAAC
CGACCTGCACTACGCTGTCATTCCGCCCGTCTCCAAACTACTGGCCTGTG
GAGATCGAGGACAAGGTGGGTTGGCGGCCATCGACGACCTGGTGAGGGCA
GTGCAGGATCAACTACAGGCTTAtctggggagggacgcgagCGGAGATGG
TCGGGAGGGATCAACGTGAAGGCTTcgaaaagcaagaaagtAACGTCTGC
TAGCCCCCACCTGGCTTAAATTTTCTATTGTTACATCAAGCCGCGGGGAC
TtctcgcccacgccctcttcctccatgtttCTCACGCACAcgcg
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Coding sequence (CDS) from alignment at CM002463.1:405827..406620+

>rna4370 ID=rna4370|Name=rna4370|organism=Nannochloropsis gaditana|type=CDS|length=669bp|location=Sequence derived from alignment at CM002463.1:405827..406620+ (Nannochloropsis gaditana)
ATGTCTGCGGCACGGCATCGTTCTCAGAGGCGACCAAGAGTCCTTCTTGC
CGCCACGGGAAGTGTCGCGACGGTCAAAATTCCGGAATTGGCGCTGCGCC
TATCCCTTGGCGCTGGCGCCGAGGTGAAGGTCGCTCTCACGAAGGCAGCA
CGGCACTTCTGGGAGTGTGCGAAGGTGTACAACCCCGCAGCATGGGCCTC
TTTCCAGGaactgggaggaagggtggaagtACTGGAGGACAAGAATGAGT
GGGACGCCTGGACTGCAATGGGGGACCCGGTCTTACACATCCAGCTTCGG
GACTGGGCTGACCTTCTCCTGATCGCCCCCTTATCGGCCAATACACTGGG
GAAACTGGCTCACGGCCTCTGCGATAACCTCGTTACGAGCATTGTTCGGG
CTTGGGATTTAAAGCAGAAGCCTGTGCTATTGGCTCCCGCCATGAACACG
CACATGTGGGAGCATCCTTTCACAGCACAGCAACTTCGGATGCTGCAAAC
CGACCTGCACTACGCTGTCATTCCGCCCGTCTCCAAACTACTGGCCTGTG
GAGATCGAGGACAAGGTGGGTTGGCGGCCATCGACGACCTGGTGAGGGCA
GTGCAGGATCAACTACAGGCTTAtctggggagggacgcgagCGGAGATGG
TCGGGAGGGATCAACGTGA
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Synonyms
Publications