EWM26313.1, cds4360 (CDS) Nannochloropsis gaditana

Overview
NameEWM26313.1
Unique Namecds4360
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:405827..406495 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26313.1
Productphosphopantothenoylcysteine decarboxylase
Orig transcript idgnl|cribi|Naga_100093g19.5110.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:405827..406495 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR003382Flavoprotein
Homology
BLAST of EWM26313.1 vs. NCBI_GenBank
Match: gi|553182564|ref|XP_005853750.1| (phosphopantothenoylcysteine decarboxylase [Nannochloropsis gaditana CCMP526] >gi|422295311|gb|EKU22610.1| phosphopantothenoylcysteine decarboxylase [Nannochloropsis gaditana CCMP526] >gi|585108319|gb|EWM26313.1| phosphopantothenoylcysteine decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 450.669 bits (1158), Expect = 3.461e-160
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
Query:    1 MSAARHRSQRRPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELGGRVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRAVQDQLQAYLGRDASGDGREGST 222
            MSAARHRSQRRPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELGGRVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRAVQDQLQAYLGRDASGDGREGST
Sbjct:    1 MSAARHRSQRRPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELGGRVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRAVQDQLQAYLGRDASGDGREGST 222          
BLAST of EWM26313.1 vs. NCBI_GenBank
Match: gi|669151490|ref|XP_008611307.1| (phosphopantothenoylcysteine decarboxylase [Saprolegnia diclina VS20] >gi|530736781|gb|EQC35023.1| phosphopantothenoylcysteine decarboxylase [Saprolegnia diclina VS20])

HSP 1 Score: 235.728 bits (600), Expect = 1.613e-75
Identity = 112/195 (57.44%), Postives = 151/195 (77.44%), Query Frame = 0
Query:    8 SQRRPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELGGRVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRAVQ 202
            +  RPRVL+AA+GSVAT+K+PEL ++L+    AEV+V LTK+A  F   A  YNP  +A+F+ LG  V +  D++EW+AW  +GDP+LHIQLRDWAD+ ++APLSAN++ KLA+GLCDNL++ +VRAW  + KP+L+APAMNT MW HP TA+ +++LQ D  Y VIPPVSK+LACG+ G G LAAIDD+V  V+
Sbjct:   11 TSTRPRVLVAASGSVATIKVPELVVKLA--EYAEVQVVLTKSADFFLPKAAAYNPTMFAAFEALG--VTIHRDEDEWNAWNVIGDPILHIQLRDWADVCVVAPLSANSMAKLANGLCDNLLSCVVRAWS-QSKPLLVAPAMNTQMWTHPCTAKHVQILQDDFGYRVIPPVSKMLACGETGNGALAAIDDIVTHVR 200          
BLAST of EWM26313.1 vs. NCBI_GenBank
Match: gi|1173956046|gb|OQS02927.1| (phosphopantothenoylcysteine decarboxylase [Thraustotheca clavata])

HSP 1 Score: 232.646 bits (592), Expect = 2.399e-74
Identity = 110/211 (52.13%), Postives = 151/211 (71.56%), Query Frame = 0
Query:    1 MSAARHRSQRRPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELGGRVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRAVQDQL---QAY 208
            M+       RRPRVL+ A+GSVATVK+PE+ L LS    A+V++ LTK+A  F E A+ YNP  +A+FQ LG  V++  D NEWD W A+GD +LHIQLR+WA++ ++APLSANT+ KL +G+CDNL+T + RAW    KP+L+APAMNT MW HP T +QL++L+ D  Y +IPP+SK+LACG+ G G LAA+  +   VQ+ +   Q+Y
Sbjct:    1 MNFVPMNMSRRPRVLVGASGSVATVKVPEIVLELS--KYADVQIVLTKSANFFLEKAEKYNPEVYAAFQTLG--VKIYLDDNEWDTWNAIGDDILHIQLREWAEVFVVAPLSANTMAKLTNGICDNLLTCVARAWA-SSKPLLIAPAMNTQMWNHPCTKKQLQILENDYGYEIIPPMSKMLACGETGNGALAAVKTICTLVQNHITETQSY 206          
BLAST of EWM26313.1 vs. NCBI_GenBank
Match: gi|813130422|ref|XP_012197644.1| (hypothetical protein SPRG_03684 [Saprolegnia parasitica CBS 223.65] >gi|641537920|gb|KDO31764.1| hypothetical protein SPRG_03684 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 231.876 bits (590), Expect = 4.460e-74
Identity = 111/195 (56.92%), Postives = 148/195 (75.90%), Query Frame = 0
Query:    8 SQRRPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELGGRVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRAVQ 202
            + RRPRVL+AA+GSVAT+K+PEL ++L+    AEV+V LTK+A  F   A  YNP  +A+F+ L   V +  D++EW+AW  +GDP+LHIQLRDWAD+ ++APLSAN++ KLA+GLCDNL+T + RAW  + KP+L+APAMNT MW HP T + + +LQ D  Y VIPPVSK+LACG+ G G LAAIDD+V  V+
Sbjct:    3 TPRRPRVLVAASGSVATIKVPELVVKLA--EYAEVQVVLTKSANFFLPKAAAYNPTMFAAFEALN--VTIHRDEDEWNAWNVIGDPILHIQLRDWADVCVVAPLSANSMAKLANGLCDNLLTCVARAWS-QSKPLLVAPAMNTQMWAHPCTGKHVTILQDDFGYRVIPPVSKMLACGETGNGALAAIDDIVAHVR 192          
BLAST of EWM26313.1 vs. NCBI_GenBank
Match: gi|325190586|emb|CCA25083.1| (phosphopantothenoylcysteine decarboxylase putative [Albugo laibachii Nc14])

HSP 1 Score: 228.794 bits (582), Expect = 2.622e-70
Identity = 113/206 (54.85%), Postives = 147/206 (71.36%), Query Frame = 0
Query:   10 RRPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELGG----------RVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRAVQDQL 205
            RRPR+LLAA+GSVATVKIPE+ +RL     A+V V LT++ + F+  AK YNP+ W    EL             V + +D+NEW++W  +GDPVLHI+L+DWADL+L+APLSANTL K+AHG+ DNL+T I RAW +  KP L+APAMNT MW+HPFT++QLR+L  +LH  +I PV K LACG  G GGLAA D+L+ A +  L
Sbjct:  178 RRPRILLAASGSVATVKIPEIIVRLH--GFADVTVVLTQSTKFFFHRAKNYNPSIWMQLLELTKFSTDVLTDKPAVTIHQDENEWESWNEVGDPVLHIELKDWADLILLAPLSANTLAKVAHGMADNLLTCITRAWPV-TKPFLIAPAMNTDMWDHPFTSRQLRVLTEELHCVLISPVRKKLACGVFGNGGLAAADELISATKKHL 380          
BLAST of EWM26313.1 vs. NCBI_GenBank
Match: gi|301117678|ref|XP_002906567.1| (phosphopantothenoylcysteine decarboxylase, putative [Phytophthora infestans T30-4] >gi|262107916|gb|EEY65968.1| phosphopantothenoylcysteine decarboxylase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 217.238 bits (552), Expect = 2.696e-68
Identity = 114/203 (56.16%), Postives = 145/203 (71.43%), Query Frame = 0
Query:   11 RPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASF----QELG---GRVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRAVQDQLQ 206
            RPRVLL A+GSVATVK+PE+A+RLS    AEV V LTKAA  F + AK YNP AW  F    Q  G   GR+ V+ D++EW AW  +GD V HI+L+DWAD++L+ P+SANTL KLA+GL DNL+T + RAW +  KP + APAMNT MW HP TA+QLR+L+ +  Y +IPPV K LACG  G+GGLA +D +V    D+L+
Sbjct:    2 RPRVLLCASGSVATVKVPEIAVRLS--ETAEVCVVLTKAADFFLQRAKNYNPLAWEKFCAATQLPGDDQGRIVVVRDEDEWAAWNVVGDSVRHIELKDWADVMLLVPMSANTLAKLANGLADNLLTCVARAW-ITSKPFIFAPAMNTDMWNHPITAKQLRVLE-EFGYKMIPPVEKKLACGVVGKGGLATVDSIVDFTLDRLR 200          
BLAST of EWM26313.1 vs. NCBI_GenBank
Match: gi|635372403|emb|CCI39624.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 223.402 bits (568), Expect = 5.624e-68
Identity = 111/226 (49.12%), Postives = 149/226 (65.93%), Query Frame = 0
Query:    8 SQRRPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELGG----------RVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACG------------------DRGQGGLAAIDDLVRAVQDQL 205
            + RRPR+LL A+GSVATVKIPE+ +RL     A+V + LTK+A+ F++ AK YNP++W    EL             + + +D++EW++WT +G PVLHIQL+DWADL+L+APLSANTL K+AHGL DNL+T I RAW    KP ++APAMNT MW+HPFT+Q LR+L  +LHY +IPPV K LACG                    G GGLA +D+++   +  L
Sbjct:  176 ASRRPRILLGASGSVATVKIPEIVVRLY--GFADVTIVLTKSAKFFFQRAKNYNPSSWMHLLELTKFSADLLTDKPAITIYQDQDEWESWTEVGHPVLHIQLKDWADLILLAPLSANTLAKVAHGLADNLLTCITRAWP-ATKPSVIAPAMNTDMWDHPFTSQHLRVLTEELHYVLIPPVRKKLACGVVGKCMNLRNVVDPSIFVSVGNGGLATVDEIITVTKQHL 398          
BLAST of EWM26313.1 vs. NCBI_GenBank
Match: gi|675201149|ref|XP_008909459.1| (hypothetical protein PPTG_14712 [Phytophthora parasitica INRA-310] >gi|566017730|gb|ETI40641.1| hypothetical protein F443_14008 [Phytophthora parasitica P1569] >gi|567955107|gb|ETK80740.1| hypothetical protein L915_13652 [Phytophthora parasitica] >gi|567983770|gb|ETL34155.1| hypothetical protein L916_13551 [Phytophthora parasitica] >gi|568013264|gb|ETL87441.1| hypothetical protein L917_13358 [Phytophthora parasitica] >gi|568043381|gb|ETM40671.1| hypothetical protein L914_13446 [Phytophthora parasitica] >gi|568090154|gb|ETN04989.1| hypothetical protein PPTG_14712 [Phytophthora parasitica INRA-310] >gi|570321380|gb|ETO69328.1| hypothetical protein F444_14040 [Phytophthora parasitica P1976] >gi|570945141|gb|ETP10398.1| hypothetical protein F441_13936 [Phytophthora parasitica CJ01A1] >gi|570976831|gb|ETP38572.1| hypothetical protein F442_13849 [Phytophthora parasitica P10297] >gi|970646119|gb|KUF86388.1| Phosphopantothenoylcysteine decarboxylase [Phytophthora nicotianae] >gi|970651562|gb|KUF90367.1| Phosphopantothenoylcysteine decarboxylase [Phytophthora nicotianae])

HSP 1 Score: 212.616 bits (540), Expect = 1.860e-66
Identity = 109/203 (53.69%), Postives = 140/203 (68.97%), Query Frame = 0
Query:   11 RPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELG-------GRVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRAVQDQLQ 206
            RP VLL A+GSVATVK+PE+A+RLS    AEV V LTK+A  F + AK YN AAW  F           GR+ V+ D++EW+ W  +GD V HI+L+DWAD++L+AP+SANTL KLA+GL DNL+T + RAW +  KP + APAMNT MW HP TAQQ+R+L  +  Y ++PP+ K LACG  G GGLA +D +V    DQL 
Sbjct:    2 RPCVLLCASGSVATVKVPEIAVRLS--ETAEVCVVLTKSADFFLQRAKDYNEAAWEEFHAATQLSGGGKGRIVVVRDEDEWEGWNVVGDSVRHIELKDWADVMLLAPMSANTLAKLANGLADNLLTCVARAW-IMTKPFIYAPAMNTDMWNHPITAQQIRVLD-EFGYKMVPPIEKKLACGVVGNGGLATVDSIVAFTLDQLH 200          
BLAST of EWM26313.1 vs. NCBI_GenBank
Match: gi|673042233|ref|XP_008875077.1| (hypothetical protein H310_10456 [Aphanomyces invadans] >gi|574469270|gb|ETV96285.1| hypothetical protein H310_10456 [Aphanomyces invadans])

HSP 1 Score: 213.772 bits (543), Expect = 5.497e-65
Identity = 115/212 (54.25%), Postives = 151/212 (71.23%), Query Frame = 0
Query:   11 RPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELGGRVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDRGQGGLAAIDDLVRAVQDQLQAYLGRDASGDGREGST 222
            RPRVLLAA+GSVA VKIP LA+   L A A+V++ +TKAA  F + A  Y+P A A+F  L   + +L D +EW AW+++GDPVLHIQLRDWAD+L IAPLSANT+ KLAHGLCDNL+T + RAW    KPV++APAMNT M++H  T+ QL +L++   Y V+PPVSK LACG+ G G LAA+D +V AV   +++ +      D   G+T
Sbjct:  134 RPRVLLAASGSVAAVKIPALAV--QLAAVADVRILVTKAATFFLDMAAAYDPVAHAAFDALA--LPILHDDDEWSAWSSLGDPVLHIQLRDWADVLCIAPLSANTMAKLAHGLCDNLLTCVARAWS-PTKPVIVAPAMNTQMYQHRVTSSQLALLRS-FGYTVVPPVSKTLACGEVGNGALAAVDTIVAAV---VRSIVSTHTPTDSFHGAT 336          
BLAST of EWM26313.1 vs. NCBI_GenBank
Match: gi|1173941637|gb|OQR90760.1| (phosphopantothenoylcysteine decarboxylase [Achlya hypogyna])

HSP 1 Score: 207.223 bits (526), Expect = 3.116e-64
Identity = 105/207 (50.72%), Postives = 146/207 (70.53%), Query Frame = 0
Query:    9 QRRPRVLLAATGSVATVKIPELALRLSLGAGAEVKVALTKAARHFWECAKVYNPAAWASFQELGGRVEVLEDKNEWDAWTAMGDPVLHIQLRDWADLLLIAPLSANTLGKLAHGLCDNLVTSIVRAWDLKQKPVLLAPAMNTHMWEHPFTAQQLRMLQTDLHYAVIPPVSKLLACGDR--------------GQGGLAAIDDLVRAV 201
            ++RPRVL+AA+GSVATVKIPE+ ++L+    AEV++ LTKAA  F E A  YNP+ +A+++ L   + +  D++EW +W A+GDP+LHIQLRDWAD+ ++APLSAN++ KLA+GL DNL+T + RAW    KP+L+APAMNT MW HP T + LR+L+ +  Y +I PVSK+LACG+               G G LA +DD+V  V
Sbjct:    8 KQRPRVLVAASGSVATVKIPEIVVKLA--EHAEVQLVLTKAAAFFLEKAASYNPSMFAAYEALN--ITIHRDEDEWSSWNAIGDPILHIQLRDWADVFVVAPLSANSMAKLANGLSDNLLTCVARAWS-SAKPLLVAPAMNTQMWLHPCTDKHLRVLEGEYVYRIIRPVSKMLACGETGARTSCWLRITTFVGYGALAHVDDIVACV 209          
The following BLAST results are available for this feature:
BLAST of EWM26313.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553182564|ref|XP_005853750.1|3.461e-160100.00phosphopantothenoylcysteine decarboxylase [Nannoch... [more]
gi|669151490|ref|XP_008611307.1|1.613e-7557.44phosphopantothenoylcysteine decarboxylase [Saprole... [more]
gi|1173956046|gb|OQS02927.1|2.399e-7452.13phosphopantothenoylcysteine decarboxylase [Thraust... [more]
gi|813130422|ref|XP_012197644.1|4.460e-7456.92hypothetical protein SPRG_03684 [Saprolegnia paras... [more]
gi|325190586|emb|CCA25083.1|2.622e-7054.85phosphopantothenoylcysteine decarboxylase putative... [more]
gi|301117678|ref|XP_002906567.1|2.696e-6856.16phosphopantothenoylcysteine decarboxylase, putativ... [more]
gi|635372403|emb|CCI39624.1|5.624e-6849.12unnamed protein product [Albugo candida][more]
gi|675201149|ref|XP_008909459.1|1.860e-6653.69hypothetical protein PPTG_14712 [Phytophthora para... [more]
gi|673042233|ref|XP_008875077.1|5.497e-6554.25hypothetical protein H310_10456 [Aphanomyces invad... [more]
gi|1173941637|gb|OQR90760.1|3.116e-6450.72phosphopantothenoylcysteine decarboxylase [Achlya ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4370rna4370Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications