rna4316, rna4316 (mRNA) Nannochloropsis gaditana

Overview
Namerna4316
Unique Namerna4316
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1866
Alignment locationCM002463.1:273607..274971 -

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Properties
Property NameValue
Productprip interacting pimt
Orig transcript idgnl|cribi|Naga_100031g18.2248.mrna
Orig protein idgnl|cribi|Naga_100031g18.2248
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:273607..274971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100031g18gene4159Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26365.1cds4306Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4316rna4316-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4316 ID=rna4316|Name=rna4316|organism=Nannochloropsis gaditana|type=mRNA|length=1866bp
ATGGCATATACTGGTAGCACACAGGCGGAGAAGGGAGGGGAAGGAGGGAT
TGACAAGAGGGGAGGGGGGCTTCCGTGGCAACCTCCTCCCCGTTTTCCGG
GCCCACTAGGTCTCCTCGGCTCTCGTCACCCCGCTACCAGTGATCAGGAT
AGTGCTGGGCGCACGTACAGAGACTTAGACAAACAAGAGCGCCAGCAGAC
ACAGGAGCCGCTCAACCCGCCCTCAGGGACAGGCTCCAATGCGGTAAATG
TCAACCTCCTGCCTTACTTCAAGCAACCGCGAGGCGCCTGGCACCAGATG
TGCGAGGATTATGGCCTACCCGTCTCAGGCGTAGTCAATGCTCAAGACCT
TCGAGCAGTGCTCGGGTGTACATGTGCGGAAGTGGCACTTGGATGGCAGG
ACGAGGCCTTGCGCGTGGGGAAAAAAATGGCGGGCGTGCTAGCCGCCTTG
AATTATACAAGCGATGGCAGCGTGAGTGTGACATTTGCCGACCCGACTGG
GCGAGTGCAGGGGTACCTACACCCCGATGTAATCGATGAATACGGCCCGG
ACCTTTGCGTTGGCTCCGTCATGGTGTTGAGTGGCGCGGCGATCTTGGTG
AGCGGGCCCGGCGTGCAACGCTGGTTGAATGTCGTCCCAGAGAACGTCCG
AGGCTTCTACAAAGCAGTCGGAATCGAGAAAAGTGAAATGAAGAAGAAAA
ATGGAGGGGAAAGGGTAGAGATAGGGGGAATCATGGCGGTGGACGGCGAG
GAGCCCGGCCGGCCGAGCGGGGTGAGGTACGGGGAGGAAGAGGAGGGGCT
CGTGGCGATGGGAGTGGAGGACACCGAGAGAGGTGGAGGTGTGGGAGTTG
ATGAGTCCGTCAGACCACAATCCGTGTCTGCCCATACACCGAACCCTCCT
GCGTCTTCTTGGCACGGAGGAGGACAAGCTGGGGAGGTGCATTCGGGCAT
GCGTCTGAGCATGGGGTGGGCGACGGAGGACTCGCGGATGCAGGCCTTGG
CCATGCTGGGCCCCGGGGTCGATGGGGTAGGGGGGGAAGAAGGAGGGGAG
GAAGGGATGGAGGAAGGGGCGGAGGACGTGTGGGAGGGAGAGGAGAAGGG
GATGGATCTCCAGGAGGGGACGTCGTGGGCGAGGGAGGGAGCGGGGGAGG
GCCTGGGTGGGGGGCCAGAGGGGATGCCCCGGAGAGAAGCCCGGTTTCAG
CATCCGGGAAAATTCTTCTCCATGGACCATGACTGCGGTCGTCCGCTTCG
AGGGAGGGCGGGGGCTCACTCTGCTGGGCGGGGGCAGGAGCCGGTCGAGA
AAATCGGATCGGACGCGGCTTCCCCTTCGGCGTATTTCCTGGGGTTGATG
GGTGGAAGGAGGAGGGGGGAAGGTAGGGGGGAAGGGGGAATAAGCCGGTT
TGAGGGGCCGTCCTCATTGGATTCAACGGTCGCGCAGCCGGGGGACGATG
TCGTGGAGAGGAGGAAGGAGAAGGAGGGCATGGGCGGCAGGAAGAGCGCA
GAAGAGGAGGCGTGCGAGGCGCTCTTGCAGGAATGGGTAGGGAGGAGAAA
GGCAGGGGCAGAGGGAGAGGAGGGGATGGAGTTTGAGCAGGGCGGACGAC
GGGAGGGATGGAGCCTTTCGAGGGGGGGAGTAGGGGAGGGCGGGAGGGGG
AGTGGGGCGGGCGGGGCCGGCAGGGAGGCTATCGAGAGTGGAATAATACC
TCCGCCACCACCACTGAGCGTGGGGCCCTGCGTGATCGAGGGAGGGAAGG
ACAGGGAGAGGGAGATGTTGGTCGGGGTGGGGGGAGGAGAAGGGGGGGAG
GGAGGGAGGGAGGAAGTGGACGTGTTGGATGAGGCGCTGGAGGAGGATGA
GGCGCTCTGGGCGTAG
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protein sequence of rna4316

>rna4316-protein ID=rna4316-protein|Name=rna4316|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MYLARQSASFLAWHILTLYLCNRVGRVCGILAMEQKEALKETKEEDSQSS
SVAAPTGSPAPAPTQSAETCSPPSNLRDGANPLPSSSPTPQGPAAAHSRI
IYGKDVPSENDEIQYKWGAIFYNYTPDQRALLALDEVSMYSITDTRSANN
TSRILQQLVGERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLE
HNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDL
SFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCA
RKQLLVILDTTGKIHSNLREGGRGGRGRGGGRGGHNRGQGDRPWSLKRKS
T
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mRNA from alignment at CM002463.1:273607..274971-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4316 ID=rna4316|Name=rna4316|organism=Nannochloropsis gaditana|type=mRNA|length=1365bp|location=Sequence derived from alignment at CM002463.1:273607..274971- (Nannochloropsis gaditana)
GAAGGGCACTTCTAGCACAGGACATGTATTTGGCAAGGCAAAGTGCAAGC
TTCCTAGCTTGGCATATTCTGACACTCTACTTATGCAACAGGGTGGGACG
GGTCTGCGGAATTCTCGCGATGGAACAAAAAGAGGCTTTAAAGGAAACAA
AGGAAGAAGACTCTCAATCGTCATCAGTTGCTGCCCCTACAGGCTCCCCG
GCGCCGGCACCTACACAATCTGCAGAGACGTGCAGCCCTCCTAGTAATTT
GAGAGATGGCGCCAACCCGCTGCCAAGCTCCTCCCCTACGCCCCAAGGCC
CGGCTGCGGCCCACTCTCGTATCATCTATGGGAAGGATGTGCCCAGTGAA
AACGACGAAATCCAATACAAATGGGGTGCCATCTTCTATAATTATACCCC
GGATCAACGAGCCCTACTGGCTCTAGATGAGGTATCCATGTATAGTATTA
CAGACACACGGTCGGCGAACAACACTTCACGCATTTTGCAGCAGCTTGTT
GGTGAACGGGCCGTTGTGACAGATGGCTGTGCGGCAGCAGGGGGGAATGT
TTTATCTTTCGCACAGCATTTTCGGCGGGTTCAAGCCGTGGAGCTCGATC
CTCAGCGTTTCAGCCTTCTCGAACACAACGTGAAAGCATTGGGGCTGGAA
GACACGGTAACAACGTTCAAGGGAGATTTCTTAGAGAAAATGCACAGCCT
GCAGCAGGACGTAGTGTTCCTCGACCCACCTTGGGGAGGCAAGTCCTACG
TCGAGAACGACATGGTGGACCTGTCGTTCGGCGGGGTGCCCTTAGCCGAG
CTCTGCGAGCGTCTGAAGCCTCACGCTCATTACATTGCCTTGAAACTGCC
CTTGAATTTCAATTTGGAGGGTCTGACGGCCCATGTAACCTCCTCGGTGG
TGCGTGCGGACAGCCGATGCGCCCGGAAGCAGCTGTTAGTCATCCTGGAT
ACGACGGGGAAAATTCACTCTAATCTGCGAGAGGGGGGGAGGGGAGGGAG
GGGCAGAGGAGGAGGGAGAGGGGGGCACAATCGCGGGCAGGGCGACAGAC
CTTGGTCGCTAAAGCGCAAATCAACATAAAATGCAGCTTAAATTACGTAA
AAAGCGCTCCACCCGCGTTTGAATGCAGATACCCTTGTAGACATGGACGA
TATAAGACATTGTTTACCCGATTTTCCGGCTTATTGTAACATATGCTTAC
ATCACCACCCCCGGCTCCCCTCCCGTCTTGAGGCGCCTTGAAAGACACGC
TGAGACGCCAACCCTAACACACAGTACTATTCCTGTAAGCGTCGAAAGAC
TTCACGAGGAGACAGACATGTGTGGTACAGGTGGCAATCTACGTCCGAGG
GCATGCACAAGAAGC
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Coding sequence (CDS) from alignment at CM002463.1:273607..274971-

>rna4316 ID=rna4316|Name=rna4316|organism=Nannochloropsis gaditana|type=CDS|length=1056bp|location=Sequence derived from alignment at CM002463.1:273607..274971- (Nannochloropsis gaditana)
ATGTATTTGGCAAGGCAAAGTGCAAGCTTCCTAGCTTGGCATATTCTGAC
ACTCTACTTATGCAACAGGGTGGGACGGGTCTGCGGAATTCTCGCGATGG
AACAAAAAGAGGCTTTAAAGGAAACAAAGGAAGAAGACTCTCAATCGTCA
TCAGTTGCTGCCCCTACAGGCTCCCCGGCGCCGGCACCTACACAATCTGC
AGAGACGTGCAGCCCTCCTAGTAATTTGAGAGATGGCGCCAACCCGCTGC
CAAGCTCCTCCCCTACGCCCCAAGGCCCGGCTGCGGCCCACTCTCGTATC
ATCTATGGGAAGGATGTGCCCAGTGAAAACGACGAAATCCAATACAAATG
GGGTGCCATCTTCTATAATTATACCCCGGATCAACGAGCCCTACTGGCTC
TAGATGAGGTATCCATGTATAGTATTACAGACACACGGTCGGCGAACAAC
ACTTCACGCATTTTGCAGCAGCTTGTTGGTGAACGGGCCGTTGTGACAGA
TGGCTGTGCGGCAGCAGGGGGGAATGTTTTATCTTTCGCACAGCATTTTC
GGCGGGTTCAAGCCGTGGAGCTCGATCCTCAGCGTTTCAGCCTTCTCGAA
CACAACGTGAAAGCATTGGGGCTGGAAGACACGGTAACAACGTTCAAGGG
AGATTTCTTAGAGAAAATGCACAGCCTGCAGCAGGACGTAGTGTTCCTCG
ACCCACCTTGGGGAGGCAAGTCCTACGTCGAGAACGACATGGTGGACCTG
TCGTTCGGCGGGGTGCCCTTAGCCGAGCTCTGCGAGCGTCTGAAGCCTCA
CGCTCATTACATTGCCTTGAAACTGCCCTTGAATTTCAATTTGGAGGGTC
TGACGGCCCATGTAACCTCCTCGGTGGTGCGTGCGGACAGCCGATGCGCC
CGGAAGCAGCTGTTAGTCATCCTGGATACGACGGGGAAAATTCACTCTAA
TCTGCGAGAGGGGGGGAGGGGAGGGAGGGGCAGAGGAGGAGGGAGAGGGG
GGCACAATCGCGGGCAGGGCGACAGACCTTGGTCGCTAAAGCGCAAATCA
ACATAA
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Synonyms
Publications