EWM26365.1, cds4306 (CDS) Nannochloropsis gaditana

Overview
NameEWM26365.1
Unique Namecds4306
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:273893..274948 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26365.1
Productprip interacting pimt
Orig transcript idgnl|cribi|Naga_100031g18.2248.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:273893..274948 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0032259methylation
GO:00094527-methylguanosine RNA capping
GO:0001510RNA methylation
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003676nucleic acid binding
GO:0008168methyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR002052DNA_methylase_N6_adenine_CS
IPR019012RNA_cap_Gua-N2-MeTrfase
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM26365.1 vs. NCBI_GenBank
Match: gi|585108375|gb|EWM26365.1| (prip interacting pimt [Nannochloropsis gaditana])

HSP 1 Score: 729.554 bits (1882), Expect = 0.000e+0
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0
Query:    1 MYLARQSASFLAWHILTLYLCNRVGRVCGILAMEQKEALKETKEEDSQSSSVAAPTGSPAPAPTQSAETCSPPSNLRDGANPLPSSSPTPQGPAAAHSRIIYGKDVPSENDEIQYKWGAIFYNYTPDQRALLALDEVSMYSITDTRSANNTSRILQQLVGERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILDTTGKIHSNLREGGRGGRGRGGGRGGHNRGQGDRPWSLKRKST 351
            MYLARQSASFLAWHILTLYLCNRVGRVCGILAMEQKEALKETKEEDSQSSSVAAPTGSPAPAPTQSAETCSPPSNLRDGANPLPSSSPTPQGPAAAHSRIIYGKDVPSENDEIQYKWGAIFYNYTPDQRALLALDEVSMYSITDTRSANNTSRILQQLVGERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILDTTGKIHSNLREGGRGGRGRGGGRGGHNRGQGDRPWSLKRKST
Sbjct:    1 MYLARQSASFLAWHILTLYLCNRVGRVCGILAMEQKEALKETKEEDSQSSSVAAPTGSPAPAPTQSAETCSPPSNLRDGANPLPSSSPTPQGPAAAHSRIIYGKDVPSENDEIQYKWGAIFYNYTPDQRALLALDEVSMYSITDTRSANNTSRILQQLVGERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILDTTGKIHSNLREGGRGGRGRGGGRGGHNRGQGDRPWSLKRKST 351          
BLAST of EWM26365.1 vs. NCBI_GenBank
Match: gi|698799508|ref|XP_009832783.1| (hypothetical protein H257_08563 [Aphanomyces astaci] >gi|574112180|gb|ETV77673.1| hypothetical protein H257_08563 [Aphanomyces astaci])

HSP 1 Score: 154.066 bits (388), Expect = 1.342e-39
Identity = 85/212 (40.09%), Postives = 119/212 (56.13%), Query Frame = 0
Query:  110 NDEIQYKWGAIFYNYTPDQRALLALDEVSMYSITDTRSANNTSRILQQLVG--ERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILDT--TGKIHSN 317
            ND+  + +G +     P+ R  L LD+V+ YS+TD ++A   S  L  L G    +VVTD  A  GGN  SF   FR VQAVE+D  RF +L HN+ A+        F  ++++ +    QDVVF+DPPWGG  Y     VDL  G  PLA++CERL     Y+ +K+P NF+L+ LT HV+ +V    S   RK  LV++D      +HS+
Sbjct:  187 NDKRDFLFGGL----APELRVQLQLDDVAQYSVTDMKTAARISHFLMTLPGLSPDSVVTDATACVGGNTASFCTFFRYVQAVEIDATRFQMLVHNLHAVMSYVNAQCFCANYVDVVECFGQDVVFVDPPWGGPEYRSRSTVDLFLGDTPLADVCERLVGRTQYVVIKVPENFDLDKLTRHVSGTVGYVAS--FRKMGLVVVDYRFVSPVHSD 392          
BLAST of EWM26365.1 vs. NCBI_GenBank
Match: gi|673035986|ref|XP_008871954.1| (hypothetical protein H310_08102 [Aphanomyces invadans] >gi|574472393|gb|ETV99398.1| hypothetical protein H310_08102 [Aphanomyces invadans])

HSP 1 Score: 150.984 bits (380), Expect = 1.006e-38
Identity = 83/223 (37.22%), Postives = 122/223 (54.71%), Query Frame = 0
Query:   89 TPQGPAAAHSRIIYGKDVPSENDEIQYKWGAIFYNYTPDQRALLALDEVSMYSITDTRSANNTSRILQQLVG--ERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILD 309
            TP   + + S +   K     ND+  + +G +     P+ R  + LD+V+ YS+TD ++A   S  +  L G    ++VTD  A  GGN  SF   FR VQAVE+D  RF +L HN+ A+     V  +  ++++ +    QDVVF+DPPWGG  Y     VDL  G  PLA++CERL     Y+ +K+P NF+L+  TA+V+  V    S   RK  LV++D
Sbjct:  138 TPTSRSVSKSLLKKNKTTNDPNDKRDFLFGGL----PPELRIQMQLDDVAQYSVTDMKTAARISHFISALPGLSPDSIVTDSTACVGGNTASFCTFFRYVQAVEIDATRFQMLVHNLHAVMSLVNVQCYCANYVDVVECFSQDVVFVDPPWGGPEYRSRCTVDLFLGNTPLADVCERLVGRTQYVVVKVPENFDLDKFTANVSGVVGYISS--FRKMGLVVVD 354          
BLAST of EWM26365.1 vs. NCBI_GenBank
Match: gi|635364794|emb|CCI46782.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 150.214 bits (378), Expect = 1.131e-38
Identity = 79/209 (37.80%), Postives = 120/209 (57.42%), Query Frame = 0
Query:  111 DEIQYKWGAIFYNYTPDQRALLALDEVSMYSIT-DTRSANNTSRILQQLVGE---------RAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILD 309
            D+  Y +G+I Y     QR  L +DEV+MYS+T DT +   T  I ++L             A +TD  A  GGNV SF++ F  V AVE DP R  +L HN+  L  +  VT +  ++LE M +LQQDVVF+DPPWGG+ Y E + +DL    +PL  +C++L+ H   + +K P+NF+L  L   V S  ++   +  +K +++++D
Sbjct:  142 DKRDYFFGSIPYR----QRQCLQMDEVAMYSVTRDTVAIEITRLITEELYSNVPVDSNGRLMATITDATACVGGNVWSFSETFAYVHAVECDPTRHGMLCHNLGILRCDHNVTCWNRNYLELMSTLQQDVVFIDPPWGGQQYREVEKLDLYLDDIPLCVICDQLRWHTKLVFVKAPINFDLVKLRMFVQSGTIKVFDQVDKKMMIIMID 346          
BLAST of EWM26365.1 vs. NCBI_GenBank
Match: gi|325182170|emb|CCA16623.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 148.673 bits (374), Expect = 3.996e-38
Identity = 80/209 (38.28%), Postives = 118/209 (56.46%), Query Frame = 0
Query:  111 DEIQYKWGAIFYNYTPDQRALLALDEVSMYSIT-DTRSANNTSRILQQLVGE---------RAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILD 309
            D+  Y +G+I +     QR  L LDEV+MYS+T DT +   T  I ++L             A +TD  A  GGNV SF+  F  V AVE D  R+ +L HN+  L  +  VT +  ++LE M SL QDVVF+DPPWGG+ Y E + +DL    +PL  +C++L+ HA  + +K P NF+LE L   V S  ++      +K +++++D
Sbjct:  137 DKRDYFFGSIPFQ----QRQCLQLDEVAMYSVTKDTVATEITRLITEELCSNVPIDSNGRLMATITDATACVGGNVWSFSDKFAHVHAVECDTTRYGMLCHNLTILRSDHNVTCWNENYLELMWSLHQDVVFIDPPWGGQQYREIEKLDLYLVDIPLCVICDQLRWHAKLVFVKAPTNFDLEKLKKFVQSGTIKVFDHLHKKMIIIMID 341          
BLAST of EWM26365.1 vs. NCBI_GenBank
Match: gi|813199478|ref|XP_012209310.1| (hypothetical protein SPRG_14587 [Saprolegnia parasitica CBS 223.65] >gi|641525561|gb|KDO20007.1| hypothetical protein SPRG_14587 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 145.976 bits (367), Expect = 8.232e-37
Identity = 73/183 (39.89%), Postives = 104/183 (56.83%), Query Frame = 0
Query:  129 RALLALDEVSMYSITDTRSANNTSRILQQLVG--ERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILD 309
            R+ L LD+V+ YS+TD ++A   S  +  L G    +V+TD  A  GGN  SF   FR VQAVE+DP RF +L HN+  +     +  +  ++++      QDVVF+DPPWGG  Y     VDL  G  PLA+LCERL     Y+ +K+P NF++E  T  V+ +V        RK  +V++D
Sbjct:  177 RSQLQLDDVAQYSVTDMKTAARISHFIMTLPGLTPNSVITDATACVGGNTASFCTFFRYVQAVEIDPTRFRMLVHNMHGVLTFVNIQCYCANYVDVAQQFLQDVVFIDPPWGGPEYRTRSTVDLHLGETPLADLCERLVGRTQYVVIKVPQNFDIERFTFRVSGTVSYITH--FRKMAMVVVD 357          
BLAST of EWM26365.1 vs. NCBI_GenBank
Match: gi|669148530|ref|XP_008609827.1| (hypothetical protein SDRG_05863 [Saprolegnia diclina VS20] >gi|530738164|gb|EQC36406.1| hypothetical protein SDRG_05863 [Saprolegnia diclina VS20])

HSP 1 Score: 146.362 bits (368), Expect = 8.592e-37
Identity = 74/183 (40.44%), Postives = 103/183 (56.28%), Query Frame = 0
Query:  129 RALLALDEVSMYSITDTRSANNTSRILQQLVG--ERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILD 309
            R+ L LD+V+ YS+TD ++A   S  +  L G    +V+TD  A  GGN  SF   FR VQAVE+DP RF +L HN+  +     +  +   +++      QDVVF+DPPWGG  Y     VDL  G  PLA+LCERL     Y+ +K+P NF++E  T  V+ +V        RK  +V+LD
Sbjct:  170 RSQLQLDDVAQYSVTDMKTAARISHFIMTLPGLTPNSVITDATACVGGNTASFCTFFRYVQAVEIDPTRFRMLVHNMHGVLTFVNIQCYCASYVDVAEQFLQDVVFIDPPWGGPEYRSRSTVDLHLGETPLADLCERLVGRTQYVVIKVPQNFDIERFTYRVSGTVSYITH--FRKMAMVVLD 350          
BLAST of EWM26365.1 vs. NCBI_GenBank
Match: gi|813205485|ref|XP_012210029.1| (hypothetical protein SPRG_15036 [Saprolegnia parasitica CBS 223.65] >gi|641524709|gb|KDO19255.1| hypothetical protein SPRG_15036 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 145.591 bits (366), Expect = 1.341e-36
Identity = 73/183 (39.89%), Postives = 104/183 (56.83%), Query Frame = 0
Query:  129 RALLALDEVSMYSITDTRSANNTSRILQQLVG--ERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILD 309
            R+ L LD+V+ YS+TD ++A   S  +  L G    +V+TD  A  GGN  SF   FR VQAVE+DP RF +L HN+  +     +  +  ++++      QDVVF+DPPWGG  Y     VDL  G  PLA+LCERL     Y+ +K+P NF++E  T  V+ +V        RK  +V++D
Sbjct:  176 RSQLQLDDVAQYSVTDMKTAARISHFIMTLPGLTPNSVITDATACVGGNTASFCTFFRYVQAVEIDPTRFRMLVHNMHGVLTFVNIQCYCANYVDVAQQFLQDVVFIDPPWGGPEYRTRSTVDLHLGETPLADLCERLVGRTQYVVIKVPQNFDIERFTFRVSGTVSYITH--FRKMAMVVVD 356          
BLAST of EWM26365.1 vs. NCBI_GenBank
Match: gi|1173954219|gb|OQS01699.1| (hypothetical protein ACHHYP_00304 [Achlya hypogyna])

HSP 1 Score: 143.28 bits (360), Expect = 6.541e-36
Identity = 75/196 (38.27%), Postives = 108/196 (55.10%), Query Frame = 0
Query:  116 KWGAIFYNYTPDQRALLALDEVSMYSITDTRSANNTSRILQQLVG--ERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILD 309
            K   +F    P  R+ L LD+V+ YS+TD ++A   S  +  L G    +V+TD  A  GGN  SF   FR VQAVE+DP RF +L HN+  +     +  +  ++++      QDVVF+DPPWGG  Y +   VDL  G   LAELCE+L     Y+ +K+P NF++E  T  V+ +V        RK  +V++D
Sbjct:  147 KRDFLFGGLPPAVRSQLQLDDVAQYSVTDMKTAARISHFIMSLPGLTPNSVITDATACVGGNTASFCTFFRYVQAVEIDPTRFQMLVHNMHGVLTFVNIQCYCANYVDVATQFLQDVVFIDPPWGGPEYRQRSTVDLFLGDTGLAELCEQLVHRTQYVVIKVPQNFDIERFTYLVSGTVSYITH--FRKMAMVVVD 340          
BLAST of EWM26365.1 vs. NCBI_GenBank
Match: gi|1173961009|gb|OQS07084.1| (hypothetical protein THRCLA_00909 [Thraustotheca clavata])

HSP 1 Score: 137.887 bits (346), Expect = 5.280e-34
Identity = 77/202 (38.12%), Postives = 110/202 (54.46%), Query Frame = 0
Query:  110 NDEIQYKWGAIFYNYTPDQRALLALDEVSMYSITDTRSANNTSRILQQLVG--ERAVVTDGCAAAGGNVLSFAQHFRRVQAVELDPQRFSLLEHNVKALGLEDTVTTFKGDFLEKMHSLQQDVVFLDPPWGGKSYVENDMVDLSFGGVPLAELCERLKPHAHYIALKLPLNFNLEGLTAHVTSSVVRADSRCARKQLLVILD 309
            ND +  K   +F     + R  L LDEV+ YS+TD ++A   S  +  L G    +V+TD  A  GGN  SF   FR VQAVE+D  RF +L HN+ ++     +  +  ++++      QDVVF+DPPWGG  Y     VDL+ G   LAE+CE L     Y+ +K+P NF++E  T H  S VV   +   RK  +V++D
Sbjct:  140 NDPVD-KRSFLFSGLPSNVREQLQLDEVAQYSVTDMKTAARISHFIMTLPGLTPNSVITDATACVGGNTASFCTFFRYVQAVEIDATRFRMLVHNMHSVLSFVNLQCYCANYVQVAQQFLQDVVFIDPPWGGPEYRSRSTVDLNLGDASLAEVCELLVGRTQYVVIKVPQNFDIERFT-HRVSGVVSYITH-FRKMAMVVVD 338          
The following BLAST results are available for this feature:
BLAST of EWM26365.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108375|gb|EWM26365.1|0.000e+0100.00prip interacting pimt [Nannochloropsis gaditana][more]
gi|698799508|ref|XP_009832783.1|1.342e-3940.09hypothetical protein H257_08563 [Aphanomyces astac... [more]
gi|673035986|ref|XP_008871954.1|1.006e-3837.22hypothetical protein H310_08102 [Aphanomyces invad... [more]
gi|635364794|emb|CCI46782.1|1.131e-3837.80unnamed protein product [Albugo candida][more]
gi|325182170|emb|CCA16623.1|3.996e-3838.28conserved hypothetical protein [Albugo laibachii N... [more]
gi|813199478|ref|XP_012209310.1|8.232e-3739.89hypothetical protein SPRG_14587 [Saprolegnia paras... [more]
gi|669148530|ref|XP_008609827.1|8.592e-3740.44hypothetical protein SDRG_05863 [Saprolegnia dicli... [more]
gi|813205485|ref|XP_012210029.1|1.341e-3639.89hypothetical protein SPRG_15036 [Saprolegnia paras... [more]
gi|1173954219|gb|OQS01699.1|6.541e-3638.27hypothetical protein ACHHYP_00304 [Achlya hypogyna... [more]
gi|1173961009|gb|OQS07084.1|5.280e-3438.12hypothetical protein THRCLA_00909 [Thraustotheca c... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4316rna4316Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications