rna4300, rna4300 (mRNA) Nannochloropsis gaditana

Overview
Namerna4300
Unique Namerna4300
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2428
Alignment locationCM002463.1:216556..217846 -

Link to JBrowse

Properties
Property NameValue
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_100031g35.2271.mrna
Orig protein idgnl|cribi|Naga_100031g35.2271
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:216556..217846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100031g35gene4144Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26388.1cds4290Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4300rna4300-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4300 ID=rna4300|Name=rna4300|organism=Nannochloropsis gaditana|type=mRNA|length=2428bp
CCTGCATTACTTGACACGTGATGCTCCTATCAATTTCATCAAATCCCCGC
CATATCAGGAACAGTTCCTTTTATGCTTTTTATTGATGCCGCGTCCGTAT
CTGGAGTGGGTTGGGCAGCCTTGGCCGTCACTGCGTGCGCGATCTGGATA
AGTTGGCGCTATAATTTGCACGGAAGCTTTCATCCTTACGTTTATGACAA
GCGCCATACTCGTCTCCCAGGCCCCGTCAATGCATGGCCGTTCGGGTTCG
TGTGGACCGTGCGCGCCTGGCGGCAGCAGAATATATGGTGGATCAAGTCC
AAGGAACTTTTCGAGACGCATGGCTCAACTATTGGTTTCCGTGTATTTTC
GTCCTACTCCATTTTGACCCAAGATCCTGAATGCGTGCGGGCTATCGTTA
CGGGCTCTGCCGATCTTTTCCCGAAAGGTCATTTATACAAGCACCTGGGG
CTACTGCCTGGAGGAATCTTTACAACAAACGGTCCTCGGTGGCGAAGGGA
TCGACGATTGCTGACGCCGCATTTTAATTTCTCGGCGGTTTCCACTTTCG
TGCCCAGTTTCAACGCCCACGTCGAAGAGTTCTTGAACGCCTTGCGGCAA
CGCTGTCTCACACCCAGAGGTACACAAGACAAGAGCAATGATGACCGATT
TGAATCCGAAGCGAGCCAAGAGAAGGCGCCAGGAGTAGTACTGGATATGG
TCCAAGCCTTCAACCGCTTGACCCTGGACATTATTTTTGACGCCGGCTTC
GGCCATGACTTGCACGCCGTCCGCCAAGTCCCTTGTCGCGCTGCTCCCTT
GTCGGACACAGCTTTGCCATGTGCGTCTGCTGCCGCGTACAAGACTTCCC
TCGATGAAATTACCGGCGACCCATCCGAAAAAGTGGAGCCCCTCCTGCAT
GAATCAGGGGACAAGGAGAGCGACGAAATCGCCGAAGCCCTACGAATTGC
TTTCACTGAGGTCGCGCAACGCTTGACAGATCCTTTGCCCGTCCTTAAGT
ATTTGCCTCGGCGCTATTATCGAGCGAAGAAAGCTACGCAAGTCTTCAGA
CGGGTGATCGATAAGGCGGTGATGGAAAGGAGGAAACGAGGGGAGGAACA
AGCGAATGAGAAGGAGCCAGGGGTCGGGGATCGGCAAGGGAATCTTTTGG
ATTTGATGATTGCCGTGCACGAGGAAGGCACCTGGTGCACGGATGAAATG
CTCGCGCAGAGTATGACGTTCCTGATCGCTGGCCATGAAACGACCAGTGC
GATGTTAACCTGGACGTTGATGGAACTGGGGGAGCGACCTGACCTGTGGC
TGAAGCTGCGGGCCGAAGTGGATCGCGTCTGTGGGGTCTCTGCCCCCTCA
TCGCCCTGGCCTTCTCCTTCCCCTCGGTCTTCCTCCCGTATTGACGCGTC
GCACGTGGACCGCATGCCCTTCCTCCGCTGCGTGCTCAAGGAATCCTTGC
GCATGCACCCTCCTGTGACAATCATCTCCCGGCGGATCCTGAAAGATTTG
GAGGTGGCCGGGTACTTGATCCCTAAGGGCTGGCACGTAGGTGTGTCCAT
TTACACACTCCACCGCTCTCCTGCCTTGTGGGAACGTCCGGATGAATTCT
GGCCGGAGCGGTGGGAAGAAGGGCCTGGAGCCAGGGGAAAGGACACAGTG
CGAAGGTGTTCTGTGGGAGATGGCATGGCTCACTTGGACCAAAAACATTT
CGATAACGGTACCGTGCCCTCCCTACCTCACGTGCCTGTGTCTGGCGGAA
AACAGGGTGGTGTGACGCTTCCCTCGTTCGACGGAAACCAAGCTCCGCCG
ACCCAGGATCAACGGATTTCGGAGATTGCTGAGGAAAGTCGCGAAGAGGC
TGCGACGAATCCAGCAACGGGAACCAGCCGTGGGCCCCTCAAGTCTCCAT
TCCAATACATGCCCTTTTCCCTAGGCCCGCGGAACTGCATCGGCCAGCGC
TTTGCCATGACGGAGGCAAGCATCATCCTGGCCCGTCTAGTGCGAGACTG
GGATGTGACTCTTGTGGACCGGGCGGCGACCGTGCAACGTGTGGAGCTCT
TGACCGTCCGGCCGGATCGACTCCTCTGCAAATTGCAACCTCGTCAGGTG
TATCCACTGTCTCCGGTACGGTGTGGCGCACGGGAGTCGGCTGCCGCCTG
CTCTCCGTGAGCTGGGAACAGAAGGCGCGGTGAGGAACGAAAGGATTTTT
TTAAATGATACGTATAAGAAGAGAGGTGTGAATGATATTGGAGAGAAATT
TGGATATTTTGTAGACATGTATACATGTAAAGAATTTATATCGAGCGAGG
GAACAACCCCAAAAGGCGCATTCCAGGAACGCAAAAATCAGCCTTATGGG
AATGATATTGTGCTTGCGCACTGAAGCTTTGATACTTTCAACGGGGTGAT
GCCACCCTTTTTTTCGTATACATTTAGA
back to top

protein sequence of rna4300

>rna4300-protein ID=rna4300-protein|Name=rna4300|organism=Nannochloropsis gaditana|type=polypeptide|length=280bp
MLSGKRCLVVGLANHRSLAWACAQAWRAAGAEVMVSSLPRFESSVQKLLA
SSWPEAGGQESEKYSVTCDIMDQESLKTMMAKVSERFGGKLDVVLHAVAQ
ASPPAMQNAFTETTAEAFAQAHLVSAHSLVTLAREALPLLAHRHSHTAGT
QGASTRGTRNSSILTLSYLGAQRAIPPYKVMGPAKASLEASVRLLAAELG
PPPHQIRVNALSVGPVATLSARGIPGFNDMCRAAAASAPLRRNADLEDVG
GAAVFLASDAAKSVTGQVIFVDGGLSIMAP
back to top

mRNA from alignment at CM002463.1:216556..217846-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4300 ID=rna4300|Name=rna4300|organism=Nannochloropsis gaditana|type=mRNA|length=1291bp|location=Sequence derived from alignment at CM002463.1:216556..217846- (Nannochloropsis gaditana)
TTCGCTGTTGAACTTTCTTGCTGACGCAACATAGGAAAATAAAATACCTT
CTCTTCCTTGTCCACCACCACCTGTCTCCCTTCGCTTACCACTCACAGCA
GCTTTCATTGAAGGCGGATGCGACAGCTGCCAAGGCACGTCTAGAGTCAT
TTTATATTCGACATGCTCGGGGCAACAGCTGTGGCAGCAGACGGCTGAGA
GGGGGATGACTGGGAGATACTAGCTTCTCGCAGGGCCCTTTCACAAGTAT
GCTCTCCGGCAAACGTTGTCTTGTCGTTGGTCTCGCCAATCATCGTTCCT
TGGCGTGGGCTTGCGCACAGGCATGGCGTGCAGCGGGGGCTGAGGTCATG
GTCAGCTCCCTTCCTCGATTTGAGTCCTCCGTTCAGAAGCTTCTTGCATC
ATCGTGGCCAGAAGCAGGAGGTCAGGAAAGTGAAAAATATAGCGTGACAT
GCGACATCATGGACCAGGAAAGCCTGAAAACGATGATGGCCAAAGTTTCC
GAGCGCTTTGGAGGCAAACTTGATGTTGTGCTCCATGCTGTAGCTCAAGC
GTCTCCACCAGCCATGCAAAATGCTTTCACAGAGACGACGGCCGAGGCCT
TCGCGCAAGCACACCTTGTCAGCGCTCACTCTTTGGTGACACTTGCTCGG
GAAGCTCTCCCGCTCCTTGCTCATCGGCACAGCCACACTGCAGGCACGCA
GGGTGCGTCTACGAGAGGAACAAGGAACAGCAGCATCCTCACCCTTTCCT
ATCTAGGGGCACAACGTGCCATACCCCCCTACAAGGTGATGGGCCCCGCC
AAAGCCTCTCTGGAAGCTTCGGTGCGTCTCTTGGCGGCTGAATTAGGTCC
TCCTCCCCACCAGATTCGTGTGAACGCTTTGAGTGTGGGTCCTGTGGCCA
CCCTCTCCGCCCGGGGCATTCCAGGTTTCAACGACATGTGCAGAGCTGCA
GCAGCCAGTGCACCTTTGAGACGAAATGCGGACTTGGAAGATGTGGGAGG
GGCGGCGGTTTTCCTCGCGAGCGATGCCGCCAAGAGTGTCACGGGGCAAG
TCATATTTGTGGATGGCGGGTTGAGCATCATGGCACCATGACGATCGCGA
GAAAAAGAGGGTGCTGTTTGACAACGATGTGGGGAGATAGTCCTGCTATA
CTGACCGTGGTTTGTCAGTAATTAGTGCTTGTGATCTTTTTTTCTCAAGA
GAGGCGTGTATTTTCTAAATGTATACGAAAAAAAGGGTGGCATCACCCCG
TTGAAAGTATCAAAGCTTCAGTGCGCAAGCACAATATCATT
back to top

Coding sequence (CDS) from alignment at CM002463.1:216556..217846-

>rna4300 ID=rna4300|Name=rna4300|organism=Nannochloropsis gaditana|type=CDS|length=843bp|location=Sequence derived from alignment at CM002463.1:216556..217846- (Nannochloropsis gaditana)
ATGCTCTCCGGCAAACGTTGTCTTGTCGTTGGTCTCGCCAATCATCGTTC
CTTGGCGTGGGCTTGCGCACAGGCATGGCGTGCAGCGGGGGCTGAGGTCA
TGGTCAGCTCCCTTCCTCGATTTGAGTCCTCCGTTCAGAAGCTTCTTGCA
TCATCGTGGCCAGAAGCAGGAGGTCAGGAAAGTGAAAAATATAGCGTGAC
ATGCGACATCATGGACCAGGAAAGCCTGAAAACGATGATGGCCAAAGTTT
CCGAGCGCTTTGGAGGCAAACTTGATGTTGTGCTCCATGCTGTAGCTCAA
GCGTCTCCACCAGCCATGCAAAATGCTTTCACAGAGACGACGGCCGAGGC
CTTCGCGCAAGCACACCTTGTCAGCGCTCACTCTTTGGTGACACTTGCTC
GGGAAGCTCTCCCGCTCCTTGCTCATCGGCACAGCCACACTGCAGGCACG
CAGGGTGCGTCTACGAGAGGAACAAGGAACAGCAGCATCCTCACCCTTTC
CTATCTAGGGGCACAACGTGCCATACCCCCCTACAAGGTGATGGGCCCCG
CCAAAGCCTCTCTGGAAGCTTCGGTGCGTCTCTTGGCGGCTGAATTAGGT
CCTCCTCCCCACCAGATTCGTGTGAACGCTTTGAGTGTGGGTCCTGTGGC
CACCCTCTCCGCCCGGGGCATTCCAGGTTTCAACGACATGTGCAGAGCTG
CAGCAGCCAGTGCACCTTTGAGACGAAATGCGGACTTGGAAGATGTGGGA
GGGGCGGCGGTTTTCCTCGCGAGCGATGCCGCCAAGAGTGTCACGGGGCA
AGTCATATTTGTGGATGGCGGGTTGAGCATCATGGCACCATGA
back to top
Synonyms
Publications