EWM26450.1, cds4220 (CDS) Nannochloropsis gaditana

Overview
NameEWM26450.1
Unique Namecds4220
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:26083..26100 +
Alignment locationCM002463.1:26312..26712 +
Alignment locationCM002463.1:26908..27034 +
Alignment locationCM002463.1:27102..27188 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26450.1
Product60s acidic ribosomal protein p2
Orig transcript idgnl|cribi|Naga_100144g9.5971.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:26083..26100 +
CM002463.1supercontigCM002463.1:26312..26712 +
CM002463.1supercontigCM002463.1:26908..27034 +
CM002463.1supercontigCM002463.1:27102..27188 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
Homology
BLAST of EWM26450.1 vs. NCBI_GenBank
Match: gi|585108497|gb|EWM26450.1| (60s acidic ribosomal protein p2 [Nannochloropsis gaditana])

HSP 1 Score: 416.387 bits (1069), Expect = 5.473e-147
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0
Query:    1 MGTLDLKKKPLSLNYSFSSMRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATFGGGGGGGGGAAAAAAPGAADAGAEKEKKKEEKEEEEADLGGAMDMFGVSLRRECQVAAMATKKHLFQRPANLWLPLHLYPSLPEGLVYSPFSRLVFFGPLYRAGDAERSSGKVLDGKSGNSDGLSF 210
            MGTLDLKKKPLSLNYSFSSMRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATFGGGGGGGGGAAAAAAPGAADAGAEKEKKKEEKEEEEADLGGAMDMFGVSLRRECQVAAMATKKHLFQRPANLWLPLHLYPSLPEGLVYSPFSRLVFFGPLYRAGDAERSSGKVLDGKSGNSDGLSF
Sbjct:    1 MGTLDLKKKPLSLNYSFSSMRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATFGGGGGGGGGAAAAAAPGAADAGAEKEKKKEEKEEEEADLGGAMDMFGVSLRRECQVAAMATKKHLFQRPANLWLPLHLYPSLPEGLVYSPFSRLVFFGPLYRAGDAERSSGKVLDGKSGNSDGLSF 210          
BLAST of EWM26450.1 vs. NCBI_GenBank
Match: gi|553188278|ref|XP_005854766.1| (s-adenosylmethionine mitochondrial carrier protein [Nannochloropsis gaditana CCMP526] >gi|553191617|ref|XP_005855414.1| s-adenosylmethionine mitochondrial carrier protein [Nannochloropsis gaditana CCMP526] >gi|422293645|gb|EKU20945.1| s-adenosylmethionine mitochondrial carrier protein [Nannochloropsis gaditana CCMP526] >gi|422294293|gb|EKU21593.1| s-adenosylmethionine mitochondrial carrier protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 211.46 bits (537), Expect = 5.370e-63
Identity = 114/119 (95.80%), Postives = 114/119 (95.80%), Query Frame = 0
Query:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATFGGGGGGGGGAAAAAAPGAADAGAEKEKKKEEKEEEEADLGGAMDMFG--VSLRR 136
            MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEG LSTLLKDLEGKDVETLIEEGSKLLATFGGGGGGGGGAAAAAAPGAADAGAEKEKKKEEKEEEEADLGGAMDMFG    LRR
Sbjct:    1 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGLLSTLLKDLEGKDVETLIEEGSKLLATFGGGGGGGGGAAAAAAPGAADAGAEKEKKKEEKEEEEADLGGAMDMFGALTQLRR 119          
BLAST of EWM26450.1 vs. NCBI_GenBank
Match: gi|1024075057|gb|KZV68042.1| (ribosomal protein 60S [Peniophora sp. CONT])

HSP 1 Score: 86.6557 bits (213), Expect = 1.732e-18
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 0
Query:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATF 84
            MRHLA YLLL++GGN +PSA+DV   LSAVG+EADE RLSTL+ +LEGKDV  LI EG+  LA+ 
Sbjct:    1 MRHLAAYLLLQVGGNASPSAADVKKVLSAVGIEADEDRLSTLISELEGKDVAALINEGAGKLASV 65          
BLAST of EWM26450.1 vs. NCBI_GenBank
Match: gi|1069189232|ref|XP_018065456.1| (ribosomal protein 60S [Phialocephala scopiformis] >gi|972534467|gb|KUJ11101.1| ribosomal protein 60S [Phialocephala scopiformis])

HSP 1 Score: 86.2705 bits (212), Expect = 2.586e-18
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 0
Query:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATF 84
            M+HLA YLLL LGGN +PSA D+T  L +VG+EADE RL+TLLK+LEGKD+  LI EGS  LA+ 
Sbjct:    1 MKHLAAYLLLTLGGNSSPSAKDITAVLESVGIEADEERLTTLLKELEGKDINELIAEGSSKLASV 65          
BLAST of EWM26450.1 vs. NCBI_GenBank
Match: gi|1089722433|ref|XP_018707197.1| (Ribosomal protein 60S [Isaria fumosorosea ARSEF 2679] >gi|1025684019|gb|OAA71316.1| Ribosomal protein 60S [Isaria fumosorosea ARSEF 2679])

HSP 1 Score: 84.7297 bits (208), Expect = 1.014e-17
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 0
Query:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATF 84
            M+HLA YLLL LGGNE+PSA D+T  LSAVG+EADE R+ TLL +L+GKD+  LI EGS  LA+ 
Sbjct:    1 MKHLAAYLLLTLGGNESPSAKDITGVLSAVGIEADEERVKTLLSELKGKDINELIAEGSSKLASV 65          
BLAST of EWM26450.1 vs. NCBI_GenBank
Match: gi|1025692789|gb|OAA80071.1| (60S acidic ribosomal protein P2 [Cordyceps confragosa RCEF 1005])

HSP 1 Score: 84.3445 bits (207), Expect = 1.159e-17
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 0
Query:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLAT 83
            M+HLA YLLL LGGNE+PSA D+++ LSAVG+EADE R  TLL +L+GKD+  LI EGS  LA+
Sbjct:    1 MKHLAAYLLLTLGGNESPSAKDISSVLSAVGIEADEERTKTLLSELKGKDINELISEGSSKLAS 64          
BLAST of EWM26450.1 vs. NCBI_GenBank
Match: gi|452848075|gb|EME50007.1| (hypothetical protein DOTSEDRAFT_68758 [Dothistroma septosporum NZE10])

HSP 1 Score: 83.9593 bits (206), Expect = 1.623e-17
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 0
Query:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATF 84
            M+HLA YLLL+LGGN +PSA D+   LSAVG+EA+E RLSTLL +LEGKD+  LI EGS  LA+ 
Sbjct:    1 MKHLAAYLLLQLGGNTSPSAGDIKEVLSAVGIEAEEERLSTLLSELEGKDINELISEGSAKLASV 65          
BLAST of EWM26450.1 vs. NCBI_GenBank
Match: gi|1032906914|gb|OAR02099.1| (hypothetical protein LLEC1_08068 [Cordyceps confragosa])

HSP 1 Score: 83.9593 bits (206), Expect = 1.758e-17
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 0
Query:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATF 84
            M+HLA YLLL LGGNE+PSA D+T  LSAVG+EADE R+ TLL +L+GKD+  LI EG+  LA+ 
Sbjct:    1 MKHLAAYLLLTLGGNESPSAKDITGVLSAVGIEADEERVKTLLSELKGKDINELISEGASKLASV 65          
BLAST of EWM26450.1 vs. NCBI_GenBank
Match: gi|219127329|ref|XP_002183890.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404613|gb|EEC44559.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 82.8037 bits (203), Expect = 6.025e-17
Identity = 62/112 (55.36%), Postives = 76/112 (67.86%), Query Frame = 0
Query:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATFGGGGGGGGGAAAAAAPGAADAGAEKEKKKEEKEEEEADLGGAMDMFG 131
            M+HLA YLLL+LGGN +P+  D+T ALSAVGVE D   L  +L DLEG+D+E L+E G+ LLATFGGG           A  A    A +EK +E++EEEE DLGG MDMFG
Sbjct:    1 MKHLAAYLLLQLGGNASPTKDDITQALSAVGVEVDGADLDRMLADLEGQDLEALLESGNALLATFGGG------GGGGGAAAAGGEAAVEEKVEEKEEEEEMDLGGGMDMFG 106          
BLAST of EWM26450.1 vs. NCBI_GenBank
Match: gi|449548096|gb|EMD39063.1| (hypothetical protein CERSUDRAFT_112755 [Gelatoporia subvermispora B])

HSP 1 Score: 82.4185 bits (202), Expect = 6.322e-17
Identity = 40/65 (61.54%), Postives = 51/65 (78.46%), Query Frame = 0
Query:   20 MRHLATYLLLKLGGNENPSASDVTTALSAVGVEADEGRLSTLLKDLEGKDVETLIEEGSKLLATF 84
            MR++A YLLL++GGN +PSA D+ T L AVG+EADE RLS L+ +LEGKDV TLI EGS  L++ 
Sbjct:    1 MRYIAAYLLLQIGGNASPSAEDIKTVLGAVGIEADEERLSKLVSELEGKDVNTLIAEGSAKLSSV 65          
The following BLAST results are available for this feature:
BLAST of EWM26450.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108497|gb|EWM26450.1|5.473e-147100.0060s acidic ribosomal protein p2 [Nannochloropsis g... [more]
gi|553188278|ref|XP_005854766.1|5.370e-6395.80s-adenosylmethionine mitochondrial carrier protein... [more]
gi|1024075057|gb|KZV68042.1|1.732e-1866.15ribosomal protein 60S [Peniophora sp. CONT][more]
gi|1069189232|ref|XP_018065456.1|2.586e-1864.62ribosomal protein 60S [Phialocephala scopiformis] ... [more]
gi|1089722433|ref|XP_018707197.1|1.014e-1764.62Ribosomal protein 60S [Isaria fumosorosea ARSEF 26... [more]
gi|1025692789|gb|OAA80071.1|1.159e-1764.0660S acidic ribosomal protein P2 [Cordyceps confrag... [more]
gi|452848075|gb|EME50007.1|1.623e-1764.62hypothetical protein DOTSEDRAFT_68758 [Dothistroma... [more]
gi|1032906914|gb|OAR02099.1|1.758e-1763.08hypothetical protein LLEC1_08068 [Cordyceps confra... [more]
gi|219127329|ref|XP_002183890.1|6.025e-1755.36predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|449548096|gb|EMD39063.1|6.322e-1761.54hypothetical protein CERSUDRAFT_112755 [Gelatopori... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4230rna4230Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications