rna4230, rna4230 (mRNA) Nannochloropsis gaditana

Overview
Namerna4230
Unique Namerna4230
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1347
Alignment locationCM002463.1:26083..27188 +

Link to JBrowse

Properties
Property NameValue
Product60s acidic ribosomal protein p2
Orig transcript idgnl|cribi|Naga_100144g9.5971.mrna
Orig protein idgnl|cribi|Naga_100144g9.5971
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:26083..27188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100144g9gene4073Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4230rna4230-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26450.1cds4220Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4230 ID=rna4230|Name=rna4230|organism=Nannochloropsis gaditana|type=mRNA|length=1347bp
ATGATGCGAGAAGTAGCCCTCCTGGCGGTCGCCCTCTGCGCCACCTCCTC
CCTGGCTTTCCTGACCCCGCCCCCCCGGCCTGTGCGCTCGAGATGCGGCG
TCCGCGACCGGGTATTGCAGATGTCAGGAGTTGAACGCAATCCCAATTTC
GGCAAATTGATGGGCGGTTATCTCTTCCCGGAAATTGCCCGCCGACGAAG
TGCATTCCTTGAGGCCAACCCTGAAGCGAAAATTATCTCTCTGGGCATCG
GCGACACCACTCAGCCTATCCCTCCCCACATCCTCTCCGGCCTCGTGCAC
GGGGCGTCCAAGCTCGGCACCCCGCCGGGCTATTCTGGGTACGGACCCGA
CCAGGGCGTGAAGGACCTGCGGGAGAAGATCGCGAGCACGCTGTATGGGA
ACCGGATCGATCCTGACGACGTCTTCGTCTCAGACGGCGCTAAGTGCGAC
ATAGGGCGGCTGCAGGTCATGTTCGGCAAGAACGTGGTCACGGCTGTCCA
GGACCCGTCCTACCCCGTGTACGTGGACACGGCGGTGATCATGGGGCAGA
CGGGCCTGATCAACGAGCAGAGTCGCCAGTTCGACGGCATCGTCTACATG
CCCTGCAACCCCGGCAACGACTTCTTCCCCGACCTGGCCGCCCTCCCCCA
GCGCCCGGACGTCATCTACTTCTGCTCCCCCAACAACCCGACCGGCGTGG
CGGCGACCAGGCCCCAGCTGGAAGCCCTCGTCTCCTACGCCCGGGAGCAA
GGCAGCGTCATCGTCTTCGACGCCGCCTACGCGCCCTTCATCCGGGACCC
GAGCCTGCCTAAGTCCATCTTCGAGATCGAGGGGGCGCTCGAGTGCGCCA
TTGAGGTCAACTCCTTCTCCAAGTACGCAGGCTTCACGGGCGTGCGACTG
GGCTGGACCGTAGTGCCGAAGCAGCTTAAATTTCGGGATGGGAGTTCGAT
GCACGCGGACTTCAACCGGATGATGAGCACCACCTTCAACGGGGCCTCCA
ACATCGTGCAGGACGGAGGTCTCGCCATCCTGGACAAGGAGGGGCTGGCG
GAGATTCAGACACTCATCAGCTATTACCTGGCGAATGCGGCGAAGCTTCG
GGCCACAGTAGAGGCGATGGGTTACAAGGCGTACGGCGGGGACAATGGCC
CCTACGTCTACGTGGACCTGGGTGGAAAGAGCAGCTGGGATGTCTTCAGT
GAGATTTTAGAGAAGGCCCAGATTGTCACAACTCCTGGTGCTGGGTTTGG
GCCTGGAGGGGAAGGATTTTTGCGGTTGAGTGCATTTGCGTCCAAAGAGA
ACGTGGATGAGGCGTGCGAACGGCTCCAAAAGGTTATGGTGAAGTAA
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protein sequence of rna4230

>rna4230-protein ID=rna4230-protein|Name=rna4230|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MGTLDLKKKPLSLNYSFSSMRHLATYLLLKLGGNENPSASDVTTALSAVG
VEADEGRLSTLLKDLEGKDVETLIEEGSKLLATFGGGGGGGGGAAAAAAP
GAADAGAEKEKKKEEKEEEEADLGGAMDMFGVSLRRECQVAAMATKKHLF
QRPANLWLPLHLYPSLPEGLVYSPFSRLVFFGPLYRAGDAERSSGKVLDG
KSGNSDGLSF
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mRNA from alignment at CM002463.1:26083..27188+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4230 ID=rna4230|Name=rna4230|organism=Nannochloropsis gaditana|type=mRNA|length=1106bp|location=Sequence derived from alignment at CM002463.1:26083..27188+ (Nannochloropsis gaditana)
atggggaCACTGGATTTAGTGGGGTCGAAAGCCCCCTGTAGCAATTTAGT
GGCTGAGCTTTGCACAGTCCTGTCTGGGAATCGGCCGTGTTTATGTGTGC
GGTCTTTGTTAGATATTGAACATTTATCTACCTTGAGCGAAGAGGCTTGG
ACGTTCATGCAGGCGACgtctttccatccttctcaTCTTGTTCTGCCCTG
CTCCATCGTAATTTCTGATTTGTTTGCAGAAAAAaaagcctctttctctc
aaCTACTCCTTCTCAAGTATGCGTCACCTTGCAACATATCTTCTCCTCAA
ACTGGGCGGGAATGAGAATCCGTCGGCCAGCGACGTGACGACCGCTTTGT
CTGCcgtgggcgtggaggcggacgaaGGCCGTCTGAGCACTTTGCTCAAG
GACCTGGAAGGCAAAGACGTTGAGACGCTCATCGAGGAAGGCTCAAAACT
CCTTGCCACatttggaggcggcggaggtgggggaggaggcgctgcggccg
cggcggcgccTGGGGCCGCCGATGCGGGtgctgagaaggagaagaagaag
gaagagaaggaggaggaggaggcagatttGGGAGGGGCCATGGACATGTT
CGGGGTAAGTCTTAGACGGGAATGTCAAGTGTAGACTGGTTAGACGTGGG
GggtagaaggagggacacGCCTCTGGGTAGTTTGACACATATCGCGAGGA
TGCAATGCGCCTTCGCGAAATTACAGCAAAAGCGAGGTGGCTGTCATTGA
TTTAAATTGTTCCTGACGTTTTAAAGGATGGGATgcctcattttttcttc
gatCACCTCACTGATCATCAAACAGGGCGGCGATGGCTACTAAAAAGCAT
CTTTTTCAACGACCCGCGAATTTGTGGCTTCCTCTGCATTTGTACCCGTC
ACTCCCGGAAGGTCTAGTCTACTCCCCCTTCTCGCGGCTTGTTTTTTTTG
GCGTAAGTAAGTCTTGTTTGCAAAGACATGTCATGTTGAGGTTTTGAATG
CTCGATTCTGCTTTCGAAGCCTTTATATCGCGCGGGGGACGCCGAAAGGT
CAAGTGGAAAAGTGTTAGACGGGAAATCTGGTAACAGTGATGGTCTCTCT
TTTTGA
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Coding sequence (CDS) from alignment at CM002463.1:26083..27188+

>rna4230 ID=rna4230|Name=rna4230|organism=Nannochloropsis gaditana|type=CDS|length=2532bp|location=Sequence derived from alignment at CM002463.1:26083..27188+ (Nannochloropsis gaditana)
atggggaCACTGGATTTAAAAAAaaagcctctttctctcaaCTACTCCTT
CTCAAGTATGCGTCACCTTGCAACATATCTTCTCCTCAAACTGGGCGGGA
ATGAGAATCCGTCGGCCAGCGACGTGACGACCGCTTTGTCTGCcgtgggc
gtggaggcggacgaaGGCCGTCTGAGCACTTTGCTCAAGGACCTGGAAGG
CAAAGACGTTGAGACGCTCATCGAGGAAGGCTCAAAACTCCTTGCCACat
ttggaggcggcggaggtgggggaggaggcgctgcggccgcggcggcgccT
GGGGCCGCCGATGCGGGtgctgagaaggagaagaagaaggaagagaagga
ggaggaggaggcagatttGGGAGGGGCCATGGACATGTTCGGGGTAAGTC
TTAGACGGGAATGTCAAGTGGCGGCGATGGCTACTAAAAAGCATCTTTTT
CAACGACCCGCGAATTTGTGGCTTCCTCTGCATTTGTACCCGTCACTCCC
GGAAGGTCTAGTCTACTCCCCCTTCTCGCGGCTTGTTTTTTTTGGCCCTT
TATATCGCGCGGGGGACGCCGAAAGGTCAAGTGGAAAAGTGTTAGACGGG
AAATCTGGTAACAGTGATGGTCTCTCTTTTTGAatggggaCACTGGATTT
AAAAAAaaagcctctttctctcaaCTACTCCTTCTCAAGTATGCGTCACC
TTGCAACATATCTTCTCCTCAAACTGGGCGGGAATGAGAATCCGTCGGCC
AGCGACGTGACGACCGCTTTGTCTGCcgtgggcgtggaggcggacgaaGG
CCGTCTGAGCACTTTGCTCAAGGACCTGGAAGGCAAAGACGTTGAGACGC
TCATCGAGGAAGGCTCAAAACTCCTTGCCACatttggaggcggcggaggt
gggggaggaggcgctgcggccgcggcggcgccTGGGGCCGCCGATGCGGG
tgctgagaaggagaagaagaaggaagagaaggaggaggaggaggcagatt
tGGGAGGGGCCATGGACATGTTCGGGGTAAGTCTTAGACGGGAATGTCAA
GTGGCGGCGATGGCTACTAAAAAGCATCTTTTTCAACGACCCGCGAATTT
GTGGCTTCCTCTGCATTTGTACCCGTCACTCCCGGAAGGTCTAGTCTACT
CCCCCTTCTCGCGGCTTGTTTTTTTTGGCCCTTTATATCGCGCGGGGGAC
GCCGAAAGGTCAAGTGGAAAAGTGTTAGACGGGAAATCTGGTAACAGTGA
TGGTCTCTCTTTTTGAatggggaCACTGGATTTAAAAAAaaagcctcttt
ctctcaaCTACTCCTTCTCAAGTATGCGTCACCTTGCAACATATCTTCTC
CTCAAACTGGGCGGGAATGAGAATCCGTCGGCCAGCGACGTGACGACCGC
TTTGTCTGCcgtgggcgtggaggcggacgaaGGCCGTCTGAGCACTTTGC
TCAAGGACCTGGAAGGCAAAGACGTTGAGACGCTCATCGAGGAAGGCTCA
AAACTCCTTGCCACatttggaggcggcggaggtgggggaggaggcgctgc
ggccgcggcggcgccTGGGGCCGCCGATGCGGGtgctgagaaggagaaga
agaaggaagagaaggaggaggaggaggcagatttGGGAGGGGCCATGGAC
ATGTTCGGGGTAAGTCTTAGACGGGAATGTCAAGTGGCGGCGATGGCTAC
TAAAAAGCATCTTTTTCAACGACCCGCGAATTTGTGGCTTCCTCTGCATT
TGTACCCGTCACTCCCGGAAGGTCTAGTCTACTCCCCCTTCTCGCGGCTT
GTTTTTTTTGGCCCTTTATATCGCGCGGGGGACGCCGAAAGGTCAAGTGG
AAAAGTGTTAGACGGGAAATCTGGTAACAGTGATGGTCTCTCTTTTTGAa
tggggaCACTGGATTTAAAAAAaaagcctctttctctcaaCTACTCCTTC
TCAAGTATGCGTCACCTTGCAACATATCTTCTCCTCAAACTGGGCGGGAA
TGAGAATCCGTCGGCCAGCGACGTGACGACCGCTTTGTCTGCcgtgggcg
tggaggcggacgaaGGCCGTCTGAGCACTTTGCTCAAGGACCTGGAAGGC
AAAGACGTTGAGACGCTCATCGAGGAAGGCTCAAAACTCCTTGCCACatt
tggaggcggcggaggtgggggaggaggcgctgcggccgcggcggcgccTG
GGGCCGCCGATGCGGGtgctgagaaggagaagaagaaggaagagaaggag
gaggaggaggcagatttGGGAGGGGCCATGGACATGTTCGGGGTAAGTCT
TAGACGGGAATGTCAAGTGGCGGCGATGGCTACTAAAAAGCATCTTTTTC
AACGACCCGCGAATTTGTGGCTTCCTCTGCATTTGTACCCGTCACTCCCG
GAAGGTCTAGTCTACTCCCCCTTCTCGCGGCTTGTTTTTTTTGGCCCTTT
ATATCGCGCGGGGGACGCCGAAAGGTCAAGTGGAAAAGTGTTAGACGGGA
AATCTGGTAACAGTGATGGTCTCTCTTTTTGA
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Synonyms
Publications