rna4198, rna4198 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4198
Unique Name	rna4198
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2703
Alignment location	CM002462.1:1096827..1099832 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100045g23.1669.mrna
Orig protein id	gnl\|cribi\|Naga_100045g23.1669
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:1096827..1099832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100045g23	gene4042	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4198	rna4198-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26477.1	cds4188	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:1096827..1099832+
coding sequence from alignment at CM002462.1:1096827..1099832+

mRNA sequence

>rna4198 ID=rna4198|Name=rna4198|organism=Nannochloropsis gaditana|type=mRNA|length=2703bp
ATGGTCCCAGGTTTGTCATCGAAGCTATCAACCTCATCCACGCGTGTTTT
CTTCTACCACCAGACCAACAAACCAAAATTTACACAGGTTACACGCGAGA
ACATGGATGAATCCACGGGTAAAGCTGGCGATGGCGTTCCCACCCCTGTG
GCAGACGGGGGTGCCGGCGGCATAGTCCCCATGGCTGAGGGCAGCAAAAA
ACGCAGTCCCAACCGCTTGATTGTTGACGAGGCCACCAACGACGACAACA
GTGTTATCGGCCTCTCTGCCGCAAAGATGGAGGAGTTAAACCTCTTCCGT
GGAGACACGGTGGTGGTCAAGGGCAAGAAGGGACGCTCGACGGTATGCAT
CGTACTGACTGAAGAAGCCACGGATGATAGCAACGTACGCATGAACAAGG
TCGTGCGCAAGAATCTGCGAGTCCGTCTAGGAGACCTGGTGACCCTCTCC
CCCTGCTCGGACGTGCCTTACGGGAAGCGCGTGCACATCCTCCCTTTAGA
CGACACCATCGAGGGTGTCACGGGAAACCTTTTCGACGTCTATCTCAAGC
CCTATTTTTTGGAGGCCTACCGTCCTGTCACAAAGGGGGATCTCTTTCTC
GTCCGACAGGCCATGCACCCCGTTGAATTCAAGGTAGTGGAAACAGAGCC
GGCGCCGTACTGTATCGTAGCCCCCGACACGGTCATCTTTTGCGAGGGGG
AGCCGGTCAAGCGCGAGGACGAAGAGCGCCTGGACGATGTGGTATGCTGG
GAGGGCGTCGTGGATGCCGGGGGGTGCTTTGCCCGCCGGGTGACGCGGAG
AAGGAGTCGCATGAGCCTATTTTCTCGTACTGACGACGTCACGTCCCTTC
CCCTCCGCCTTCCTCCCCTCCTTCTATTCAAGGGCTACGACGACATCGGT
GGCTGCCGGCGGCAGATGGCGCAGATCCGCGAGATGATTGAGTTGCCCCT
GCGACACCCGACCCTGTTCAAAACGCTGGGAGTGAAACCCCCCCGCGGCG
TCTTACTCTATGGGCCGCCGGGATCAGGAAAGACCTTGATTGCTCGCGCC
GTCGCCAATGAGACCGGGGCCTTCTTCTTTCTCATCAACGGGCCTGAAAT
CATGTCCAAGATGGCGGGTGAGTCTGAGAGCAACTTGCGCAAGGCCTTCG
AGGAAGCAGAGAAGAATGCCCCAGCCATCATTTTCATCGACGAGATCGAC
TCCATCGCACCCAAGCGCGAAAAGACCAACGGGGAGGTGGAGCGTCGCAT
CGTCTCGCAGCTACTGACCTTGATGGATGGCATGAAGAAGCGCGCCTCTG
TGGTTGTGATTGGCGCCACAAACAGACCCAACTCCATCGATCCCGCCCTC
CGTCGTTTCGGCCGCTTCGACCGGGAAATCGACATTGGCGTGCCTGATGA
GAATGGACGTCTGGAGATCTTCCGCATCCACACTCGCAATATGAAGTTGG
ACGAAGACGTGGACCCGGAGGCGATTGCCCGCGACACGCATGGCTTTGTC
GGGGCGGACATGGCCGCACTCTGCACAGAGGCTGCTATGCAATGTATCCG
TGAGAAGATGGACGTCATTGATATCGAGGATGAGAGCATCGACGCCGAGG
TTCTGAATTCTATGGCTGTCTCTCAAGAGCACTTCAAATACGCGCTGGGT
GTGTCCAATCCCTCCTCTCTCCGAGAGACGGTCGTCGAGGTGCCAAACAT
CAATTGGGACGACATCGGTGGCCTGGAAGGCGTCAAGCGCGAGCTCCAGG
AGCTTGTCCAATACCCTGTGGAGCACCCAGAGAAGTTTGAGAAATTTGGC
ATGTCTCCTTCCCGGGGAGTCCTTTTCTACGGCCCGCCCGGGTGCGGCAA
GACTCTTATGGCCAAAGCTGTCGCAAACGAATGCCAAGCCAACTTCATCT
CGGTCAAGGGACCAGAGCTTTTGACTATGTGGTTCGGCGAGTCCGAAGCC
AACGTCCGAGAGGTTTTCGAAAAAGCTCGAGCCGCCGCGCCCTGTGTCCT
TTTCTTTGACGAACTGGATTCCATTGCGCAGTCTCGAGGGGGAAACAGCG
GAGACGGCGGTGGTGCTTCGGACCGCGTCATGAACCAGCTCTTGACAGAA
ATGGACGGCGTTGGAGCGAAGAAGAATGTCTTCATCATTGGTGCCACTAA
CCGTCCTGATATCATCGATCCTGCCCTAATGCGCCCTGGCCGCCTCGATC
AACTTATCTATATTCCCATGCCTGATTACGAGAGTCGACTGGGCGTTTTG
AAAGCGACACTTCGCAAATCTCCCGTCTCGAAGGACGTCAATCTCGAGTA
TTTGGCCGCCCAGACGGACAAGTTTACTGGCGCCGATCTGACTGAGATAT
GCCAGCGGGCCGCAAAACTTGCTATTCGTGAGGAGATCCAGCGAGACATG
GAACGGGAAAAACTGAGGGCGGAGGCTGGCGAGGTGGATATGGAAGAGGA
GCCGATGGAAGAGGTTACCGAAGCAGAGATTCTTCCTCGGCACTTCGAAG
ATGCCGTCCGCAACGCTCGCCGCTCAGTATCGGATCGAGACCTCCAGCAA
TACTCTTCCTTCGCACAGACATTGCAGCAGGCTCGCAGCCAAATTACTGG
CCCAGGAGGATCCCTAGCGGCCTTCCGCTTCCCGGAGGGAGGTGAGGCAG
CTGCTGGAGGGGCAGGGGCGGCAGCAGAGGAGGAAGATGATTTGTACTCT
TAA

protein sequence of rna4198

>rna4198-protein ID=rna4198-protein|Name=rna4198|organism=Nannochloropsis gaditana|type=polypeptide|length=754bp
MSETGSNVQEDTDDLSPGRRTSAEARLKSEHSDPHVYEDTQGSSDSFLDA
APTSQGTPTSSHEKEVAAELRQVLSTGSFAGLLMQLAGSSGSSCGSSKGS
ADSTSKVSASTEVAVDEGKREKRRRQLSPGLVDQRHLEGQAHSMEGTENP
QKIEAPPPLIAFAPRPRTLETPALGVRMAATDHTTSSMQPVVSRGQSGTS
DSAGSLNFANMSPFSSIEFPIGPTLLSSPSFPSSSSEMPEPVTSLGLLEG
QASMSTDWQEGVPLDSPSEIFMSQGGDGGSGMVMGAPSTFSAPAPTAGDA
VDERLVGLASPATSTATSTTSTMHTTTTMMDLQSGQAEGSGVGYLPVLNA
DTHFPFSASTPDETLSLPSPSVAAASLGPPADRTRDWQGRKGLRSETKTG
SPLGAEHPRVITTPTLATLSSGGARGQGQPRQIPPPPLPLPAASPMATAT
MMMGHLGFNIYYAPPPVPSSLPAASKASKSPAGAANRAAAATLTSGSRGS
RTRRRSASLSTSSTPSALPVAAIPRAAAATRPTIDTAAEVAESSTGLLRG
SYRCGRCGGMKKNHVCPYLYEEHLERRDAGTEVDLVLTRGDQDKGGRPNM
PSGMSFHFLTIRARENVKAGFQTLLASTPELDIRMETGIPSTHTSSSSAP
LLPLPVPMSVHGQAMAHSALYDNMNMSRSIQEQEPQGQRRQLQQQQDVYP
SPDQAPAIDSQVPTDMEEDQAVTLVRQCYYVRVHSDSYKDEGEGGKAWLY
MEKE

mRNA from alignment at CM002462.1:1096827..1099832+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4198 ID=rna4198|Name=rna4198|organism=Nannochloropsis gaditana|type=mRNA|length=3006bp|location=Sequence derived from alignment at CM002462.1:1096827..1099832+ (Nannochloropsis gaditana)
CCTTGAGATTTTTCAGCCCAAGGTAACGCCCAGTGATAATTGAGATGTGC
CTCTTCGCACGCAACGTGAAATGGCGATGCCTTGAAAAATGTTCATGCCC
gcgctccctcttgcttgCATAGCAGTAGCACTTGGGAAATTGGAAAAGCT
GTAGATGGGTTGGCAGTTTTCTAATGTGCTTTGTCTGCCCCATTTTTTCC
AAAGGTGTAGCTTGAGATAGACTCAACTGTGACGTGCGAAGTCTAGTGCA
TGGCAACGCTGTACTGTCTCCTTGTtgctttttctctctttccatcAAGC
TTTGCTTCTGCCATTTTCTCTGAGCTATTTACTCACATGACTCCTTCTTA
TCACTAAAAGAGGCATGTCAGAAACAGGAAGCAACGTACAAGAAGACACA
GATGACCTGAGTCCTGGGAGACGGACAAGTGCAGAAGCGAGGCTAAAAAG
TGAACATTCGGATCCACACGTGTACGAGGATACTCAGGGCTCATCAGATT
CATTTCTGGATGCGGCGCCCACATCGCAGGGGACACCGACGTCATCTCAT
GAAAAAGAAGTAGCCGCAGAGCTCCGACAGGTCCTTTCAACGGGCTCTTT
CGCTGGTTTGTTGATGCAATTGGCGGGCAGCAGTGGTAGTAGCTGCGGCA
GCAGTAAAGGTAGTGCTGATAGCACGTCCAAGGTGTCGGCTTCCACTGAG
GTAGCTGTAGACGAAGGCAAGCGAGAAAAAAGGCGGCGGCAACTATCGCC
AGGGCTTGTCGACCAGCGCCACCTGGAGGGGCAAGCACACAGTATGGAGG
GGACGGAGAACCCACAAAAAATAGAAGCTCCGCCACCTCTGATCGCCTTC
GCCCCGCGTCCAAGAACTCTCGAGACCCCTGCTTTGGGAGTACGTATGGC
CGCGACGGACCATACAACGTCGTCCATGCAGCCCGTGGTATCGAGGGGCC
AAAGCGGGACGAGCGACAGTGCGGGCAGCCTGAATTTTGCGAACAtgtct
ccattttcctcgaTAGAATTTCCCATTGGACCTACGCTGttgtcctctcc
ttcgtttccttcctcctcctctgagaTGCCGGAGCCTGTCACATCATTAG
GATTGCTCGAAGGTCAAGCATCCATGTCCACGGATTGGCAAGAGGGAGTG
CCACTGGATTCGCCGTCTGAAATTTTCATGAGCCAAGGTggtgacggagg
gagcggaatGGTGATGGGGGCACCCTCGACTTTCTCGGCGCCCGCACCTA
CTGCCGGAGACGCCGTTGACGAAAGACTGGTAGGACTCGCCTCACCTGCC
acatccaccgccacctccacaaCGTCTACCATGCACACCACCACGACCAT
GATGGACCTCCAGTCGGGACAGGCGGAAGGGTCTGGAGTAGGCTATCTAC
CTGTACTGAACGCCGACAcgcattttcccttctctgcGTCGACCCCCGAC
GagaccctttccctcccctctccctcggtggcggcggcttccCTCGGACC
TCCTGCTGACAGGACAAGGGActggcaaggaaggaaagggttgaGAAGCG
AAACGAAGACGGGATCGCCCCTCGGTGCAGAGCATCCTAGAGTGATTACT
ACTCCGACTCTTGCAACCCTTTCTTCCGGCGGGGCGCGTGGGCAGGGGCA
GCCTCGACAgattcctccacccccgttGCCGCTGCCGGCAGCCTCTCCCA
TGGCCACGGCTACGATGATGATGGGTCACCTAGGCTTTAACATCTACTAT
GCACCACcacccgtcccctcctccctacccgctGCCTCCAAGGCGTCAAA
ATCACCGGCCGGTGCTGCCAATAGGGCAGCCGCTGCGACTTTGACGAGCG
GAAGTCGGGGCTCACGAACCAGGAGACGGTCTGCGAGCCTGTCGACCTCG
TCTACACCATCAGCGCTTCCCGTCGCAGCCATTCCCAGGGCAGCTGCCGC
CACAAGACCCACAATAGACACTGCTGCTGAGGTAGCAGAGTCAAGTACAG
GACTTCTTCGTGGAAGCTACAGGTGCGGGCGCTGtggagggatgaaaaag
aATCACGTATGCCCCTATCTGTACGAGGAGCATCTGGAGAGGCGGGACGC
CGGCACAGAGGTGGACTTGGTGTTAACACGGGGAGACCAGGACAAAGGAG
GGCGTCCAAATATGCCCTCTGGCATGTCCTTTCATTTTCTGACGATTCGA
GCCCGTGAAAATGTGAAGGCGGGTTTTCAGACATTACTAGCATCGACACC
AGAGCTGGACATCAGGATGGAGACAGGCATTCCGTCGACTCAtacttcct
cgtcttcggcgCCACTGCTGCCCCTGCCAGTACCCATGAGCGTTCATGGA
CAAGCCATGGCACATTCAGCTTTATATGATAACATGAATATGTCTCGGTC
GATACAGGAGCAAGAGCCTCAGGGACAGCGGCgccagctgcagcagcaac
aagaCGTGTACCCTTCACCAGATCAAGCCCCCGCCATCGACTCACAGGTT
CCAACAgatatggaggaggatcaaGCAGTTACACTTGTGAGACAATGTTA
TTACGTGCGGGTCCATAGCGACTCGTacaaggacgaaggagaaggaggaa
aagcatgGTTGTATATGGAAAAAGAGTAGGATTATTGAAAACTGTGTGAC
TTACATTTGCGTCGGAAATATCTGGAATACCCTTCTGGAAACAGATGGGA
AGCGTACCTTTACGATGACAGTAATGAGTGAAAGGGACGGTTGGAAATGT
GTCATCTTTCTCTGACATAATCAAGGAGTGACGATAAATGTAATCTCTGT
GGAGATGCTGGATTGCTGGCTTGTAATAGTGTAGATTACATGCTTTCATG
TGTAATTTTGATGCGTAATGTAGACGCGCCGTATCGCTCTACATGTGTGC
TACATATCTTTTGCCCAAAGTACAAACATCTTTATTCTTTCATGTAGGAA
AGAAATGTGTAATTTAGATCATGTTTTTGGTCATAGAAGCAAAAAATATT
TTTGGA

Coding sequence (CDS) from alignment at CM002462.1:1096827..1099832+

>rna4198 ID=rna4198|Name=rna4198|organism=Nannochloropsis gaditana|type=CDS|length=2265bp|location=Sequence derived from alignment at CM002462.1:1096827..1099832+ (Nannochloropsis gaditana)
ATGTCAGAAACAGGAAGCAACGTACAAGAAGACACAGATGACCTGAGTCC
TGGGAGACGGACAAGTGCAGAAGCGAGGCTAAAAAGTGAACATTCGGATC
CACACGTGTACGAGGATACTCAGGGCTCATCAGATTCATTTCTGGATGCG
GCGCCCACATCGCAGGGGACACCGACGTCATCTCATGAAAAAGAAGTAGC
CGCAGAGCTCCGACAGGTCCTTTCAACGGGCTCTTTCGCTGGTTTGTTGA
TGCAATTGGCGGGCAGCAGTGGTAGTAGCTGCGGCAGCAGTAAAGGTAGT
GCTGATAGCACGTCCAAGGTGTCGGCTTCCACTGAGGTAGCTGTAGACGA
AGGCAAGCGAGAAAAAAGGCGGCGGCAACTATCGCCAGGGCTTGTCGACC
AGCGCCACCTGGAGGGGCAAGCACACAGTATGGAGGGGACGGAGAACCCA
CAAAAAATAGAAGCTCCGCCACCTCTGATCGCCTTCGCCCCGCGTCCAAG
AACTCTCGAGACCCCTGCTTTGGGAGTACGTATGGCCGCGACGGACCATA
CAACGTCGTCCATGCAGCCCGTGGTATCGAGGGGCCAAAGCGGGACGAGC
GACAGTGCGGGCAGCCTGAATTTTGCGAACAtgtctccattttcctcgaT
AGAATTTCCCATTGGACCTACGCTGttgtcctctccttcgtttccttcct
cctcctctgagaTGCCGGAGCCTGTCACATCATTAGGATTGCTCGAAGGT
CAAGCATCCATGTCCACGGATTGGCAAGAGGGAGTGCCACTGGATTCGCC
GTCTGAAATTTTCATGAGCCAAGGTggtgacggagggagcggaatGGTGA
TGGGGGCACCCTCGACTTTCTCGGCGCCCGCACCTACTGCCGGAGACGCC
GTTGACGAAAGACTGGTAGGACTCGCCTCACCTGCCacatccaccgccac
ctccacaaCGTCTACCATGCACACCACCACGACCATGATGGACCTCCAGT
CGGGACAGGCGGAAGGGTCTGGAGTAGGCTATCTACCTGTACTGAACGCC
GACAcgcattttcccttctctgcGTCGACCCCCGACGagaccctttccct
cccctctccctcggtggcggcggcttccCTCGGACCTCCTGCTGACAGGA
CAAGGGActggcaaggaaggaaagggttgaGAAGCGAAACGAAGACGGGA
TCGCCCCTCGGTGCAGAGCATCCTAGAGTGATTACTACTCCGACTCTTGC
AACCCTTTCTTCCGGCGGGGCGCGTGGGCAGGGGCAGCCTCGACAgattc
ctccacccccgttGCCGCTGCCGGCAGCCTCTCCCATGGCCACGGCTACG
ATGATGATGGGTCACCTAGGCTTTAACATCTACTATGCACCACcacccgt
cccctcctccctacccgctGCCTCCAAGGCGTCAAAATCACCGGCCGGTG
CTGCCAATAGGGCAGCCGCTGCGACTTTGACGAGCGGAAGTCGGGGCTCA
CGAACCAGGAGACGGTCTGCGAGCCTGTCGACCTCGTCTACACCATCAGC
GCTTCCCGTCGCAGCCATTCCCAGGGCAGCTGCCGCCACAAGACCCACAA
TAGACACTGCTGCTGAGGTAGCAGAGTCAAGTACAGGACTTCTTCGTGGA
AGCTACAGGTGCGGGCGCTGtggagggatgaaaaagaATCACGTATGCCC
CTATCTGTACGAGGAGCATCTGGAGAGGCGGGACGCCGGCACAGAGGTGG
ACTTGGTGTTAACACGGGGAGACCAGGACAAAGGAGGGCGTCCAAATATG
CCCTCTGGCATGTCCTTTCATTTTCTGACGATTCGAGCCCGTGAAAATGT
GAAGGCGGGTTTTCAGACATTACTAGCATCGACACCAGAGCTGGACATCA
GGATGGAGACAGGCATTCCGTCGACTCAtacttcctcgtcttcggcgCCA
CTGCTGCCCCTGCCAGTACCCATGAGCGTTCATGGACAAGCCATGGCACA
TTCAGCTTTATATGATAACATGAATATGTCTCGGTCGATACAGGAGCAAG
AGCCTCAGGGACAGCGGCgccagctgcagcagcaacaagaCGTGTACCCT
TCACCAGATCAAGCCCCCGCCATCGACTCACAGGTTCCAACAgatatgga
ggaggatcaaGCAGTTACACTTGTGAGACAATGTTATTACGTGCGGGTCC
ATAGCGACTCGTacaaggacgaaggagaaggaggaaaagcatgGTTGTAT
ATGGAAAAAGAGTAG

Synonyms

Publications