rna4175, rna4175 (mRNA) Nannochloropsis gaditana

Overview
Namerna4175
Unique Namerna4175
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length689
Alignment locationCM002462.1:1040803..1042108 +

Link to JBrowse

Properties
Property NameValue
Productl-ascorbate peroxidase
Orig transcript idgnl|cribi|Naga_101473g1.2501.mrna
Orig protein idgnl|cribi|Naga_101473g1.2501
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1040803..1042108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101473g1gene4018Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4175rna4175-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26509.1cds4165Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4175 ID=rna4175|Name=rna4175|organism=Nannochloropsis gaditana|type=mRNA|length=689bp
GCACAGCTACTCCAGACTATGATGTATCTCATCTGCGATTGATGCCACAT
AATCGCCATTGATCCAGTCCTGCAAGACCAGTGCGTCCAATCCGTGGTAC
ATTTCTAGGCCATCGCACAAGCGCTTGTCGCCATGGGCGCGGGGATGGAG
CTTCCTGTGGATAATCAAAGCCGCCTGGCTGTAGGCTCGATTGGGATGGG
ATTCTCTGTCCTCTTATGCATTACAGCTTCTGTCCGCCTCTCCAGATTTT
GTCTGGCGTATGAATGGCGTTTCCGTGAGATTGTGAGCGACTCATTTGGA
CGCAAGCGCTTGGCAATTCATCTTGTCCTCGTTGCAGGAACGTGGTTCGT
CATTCCGCTCTACGCGCTCCTCCTTCACGCCCGCCCCCCCCACCCCTCCA
CCCTCTCCTCTCTCCTCTCCTCCTTTCACTTCCTCTTCTCCTCCTCCTTG
CCCTCCTCCTCCTTCCCCTCCCTCTCGCTCTTTGAGCCGGCACCCTCTTC
CTCTCCTACCTTCTGCATGGGCCTGCTGGCCCTCATCCGTTTCCAACTTC
TGTGCACATTGGCCAGCCTGGGCTTGGTCCTCAGCGATTGGCGCATCGAC
GTGTACGAAGCCCCCTTGCACCGCGCCCGTCGCGTGTGGATGTATGAGCT
GCGAGACGCCGTGACGGCCGGCTTGTTATGCTTGGCCTT
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protein sequence of rna4175

>rna4175-protein ID=rna4175-protein|Name=rna4175|organism=Nannochloropsis gaditana|type=polypeptide|length=214bp
MARMKQHQLRHHHVLRAACLLLLVSITGIAAFKLPYSHSNFVQNHMQGRK
GRVFMNQASDDCDRRSLLSAGAVLSSFFALSLSSTPPARASVAFDPDRYG
DKELKIATVNKLKQKLRNAIAGDLSLAVSFVRLAINDGIGYDAATNEGGP
DGSIAFEMDRDQNAGLKPALETLLKVKREIQSTNEVTFGDVCAFAGAVAI
ESTGGPRIPVQLGR
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mRNA from alignment at CM002462.1:1040803..1042108+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4175 ID=rna4175|Name=rna4175|organism=Nannochloropsis gaditana|type=mRNA|length=1306bp|location=Sequence derived from alignment at CM002462.1:1040803..1042108+ (Nannochloropsis gaditana)
CCGTGTACAGGGACAAGACATTGCTCAGCGGGCACGACTGTACGCAGGGA
AGTAACAGTGACCAATGGCGCGAATGAAGCAGCACCAGCTTCGACACCAC
CACGTTCTACGTGCCGCAtgtctgctgctgcttgtttCGATTACGGGCAT
TGCTGCATTCAAACTACCTTACAGTCATAGCAATTTTGTCCAAAATCACA
TGCAAGGCCGTAAAGGTGCGTGGGGGCaaagatgggagggaaagttgTGA
TAAAAGACATGTCTCGGGTCGCCCCCCCGGCGGGGGCCTGATCCGTCCCT
TCGTCGCACCCACGCTTGGCCTCTTGTCTCCATGTTCTATGCCTTTATGA
CCTACAGGGAGGGTCTTTATGAATCAAGCATCAGATGACTGCGACCGCAG
GAGCCTTTTGAGCGCAGGCGCCGTCCTATCCTCCTtttttgccctttccc
tctcttcgacCCCGTACGTGCATGAATGGGACACAATTACTGGGCACTGA
AGGTCATCTGTGCAAGCCTTGCGCCTTACATGAGTGTAGTTGAAAAGACG
AAGCGTGCAATGCCAAGCATGCTTGCGTTgggcctcttttccctcattCT
ACGTTGTCGCCCACCATTCCCCCCTGTATATATCCTGGCTACCGTCGTTT
CCCCCATCTCCCCACCTCTCTCAACCAGtcccgccagggcctccgtgGCC
TTTGATCCGGACCGCTACGGCGACAAGGAGTTGAAGATCGCCACCGTGAA
CAAGCTGAAGCAGAAACTCCGTAACGCCATTGCGGGCGATTTGTCGCTGG
CTGTTTCCTTTGTGCGGCTGGCGATCAACGACGGTGGGTacccgggggag
gaaggaaagaaggggggggcatgtgggggggggagagccgcgcggggaaa
aaaaggggtgGCTtggggaggcgatggaagtGCGAAGGATCGGCTGGTGT
CCGCGACgtttctttcttcctgccccctcaCCATGCGTTtgttccctctt
ccaggtATCGGCTATGATGCCGCCACGAACGAGGGAGGCCCAGACGGCTC
CATCGCCTTCGAGATGGACAGGGATCAGAACGCGGGGCTCAAACCGGCGC
TAGAGACGCTCTTGaaggtgaagagggagatcCAAAGCACGAACGAGGTC
ACCTTTGGGGATGTGTGTGCCTTTGCGGGCGCCGTGGCTATTGAGAGTAC
GGGCGGCCCCCGGATCCCAGTCCAGCTCGGAAGGTAagaaggagcgggaa
aggaagggagggggggacccTGTGTGGGGAGTTcgggggcggaggtgctA
GAGACG
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Coding sequence (CDS) from alignment at CM002462.1:1040803..1042108+

>rna4175 ID=rna4175|Name=rna4175|organism=Nannochloropsis gaditana|type=CDS|length=2580bp|location=Sequence derived from alignment at CM002462.1:1040803..1042108+ (Nannochloropsis gaditana)
ATGGCGCGAATGAAGCAGCACCAGCTTCGACACCACCACGTTCTACGTGC
CGCAtgtctgctgctgcttgtttCGATTACGGGCATTGCTGCATTCAAAC
TACCTTACAGTCATAGCAATTTTGTCCAAAATCACATGCAAGGCCGTAAA
GGGAGGGTCTTTATGAATCAAGCATCAGATGACTGCGACCGCAGGAGCCT
TTTGAGCGCAGGCGCCGTCCTATCCTCCTtttttgccctttccctctctt
cgacCCCtcccgccagggcctccgtgGCCTTTGATCCGGACCGCTACGGC
GACAAGGAGTTGAAGATCGCCACCGTGAACAAGCTGAAGCAGAAACTCCG
TAACGCCATTGCGGGCGATTTGTCGCTGGCTGTTTCCTTTGTGCGGCTGG
CGATCAACGACGgtATCGGCTATGATGCCGCCACGAACGAGGGAGGCCCA
GACGGCTCCATCGCCTTCGAGATGGACAGGGATCAGAACGCGGGGCTCAA
ACCGGCGCTAGAGACGCTCTTGaaggtgaagagggagatcCAAAGCACGA
ACGAGGTCACCTTTGGGGATGTGTGTGCCTTTGCGGGCGCCGTGGCTATT
GAGAGTACGGGCGGCCCCCGGATCCCAGTCCAGCTCGGAAGGTAaATGGC
GCGAATGAAGCAGCACCAGCTTCGACACCACCACGTTCTACGTGCCGCAt
gtctgctgctgcttgtttCGATTACGGGCATTGCTGCATTCAAACTACCT
TACAGTCATAGCAATTTTGTCCAAAATCACATGCAAGGCCGTAAAGGGAG
GGTCTTTATGAATCAAGCATCAGATGACTGCGACCGCAGGAGCCTTTTGA
GCGCAGGCGCCGTCCTATCCTCCTtttttgccctttccctctcttcgacC
CCtcccgccagggcctccgtgGCCTTTGATCCGGACCGCTACGGCGACAA
GGAGTTGAAGATCGCCACCGTGAACAAGCTGAAGCAGAAACTCCGTAACG
CCATTGCGGGCGATTTGTCGCTGGCTGTTTCCTTTGTGCGGCTGGCGATC
AACGACGgtATCGGCTATGATGCCGCCACGAACGAGGGAGGCCCAGACGG
CTCCATCGCCTTCGAGATGGACAGGGATCAGAACGCGGGGCTCAAACCGG
CGCTAGAGACGCTCTTGaaggtgaagagggagatcCAAAGCACGAACGAG
GTCACCTTTGGGGATGTGTGTGCCTTTGCGGGCGCCGTGGCTATTGAGAG
TACGGGCGGCCCCCGGATCCCAGTCCAGCTCGGAAGGTAaATGGCGCGAA
TGAAGCAGCACCAGCTTCGACACCACCACGTTCTACGTGCCGCAtgtctg
ctgctgcttgtttCGATTACGGGCATTGCTGCATTCAAACTACCTTACAG
TCATAGCAATTTTGTCCAAAATCACATGCAAGGCCGTAAAGGGAGGGTCT
TTATGAATCAAGCATCAGATGACTGCGACCGCAGGAGCCTTTTGAGCGCA
GGCGCCGTCCTATCCTCCTtttttgccctttccctctcttcgacCCCtcc
cgccagggcctccgtgGCCTTTGATCCGGACCGCTACGGCGACAAGGAGT
TGAAGATCGCCACCGTGAACAAGCTGAAGCAGAAACTCCGTAACGCCATT
GCGGGCGATTTGTCGCTGGCTGTTTCCTTTGTGCGGCTGGCGATCAACGA
CGgtATCGGCTATGATGCCGCCACGAACGAGGGAGGCCCAGACGGCTCCA
TCGCCTTCGAGATGGACAGGGATCAGAACGCGGGGCTCAAACCGGCGCTA
GAGACGCTCTTGaaggtgaagagggagatcCAAAGCACGAACGAGGTCAC
CTTTGGGGATGTGTGTGCCTTTGCGGGCGCCGTGGCTATTGAGAGTACGG
GCGGCCCCCGGATCCCAGTCCAGCTCGGAAGGTAaATGGCGCGAATGAAG
CAGCACCAGCTTCGACACCACCACGTTCTACGTGCCGCAtgtctgctgct
gcttgtttCGATTACGGGCATTGCTGCATTCAAACTACCTTACAGTCATA
GCAATTTTGTCCAAAATCACATGCAAGGCCGTAAAGGGAGGGTCTTTATG
AATCAAGCATCAGATGACTGCGACCGCAGGAGCCTTTTGAGCGCAGGCGC
CGTCCTATCCTCCTtttttgccctttccctctcttcgacCCCtcccgcca
gggcctccgtgGCCTTTGATCCGGACCGCTACGGCGACAAGGAGTTGAAG
ATCGCCACCGTGAACAAGCTGAAGCAGAAACTCCGTAACGCCATTGCGGG
CGATTTGTCGCTGGCTGTTTCCTTTGTGCGGCTGGCGATCAACGACGgtA
TCGGCTATGATGCCGCCACGAACGAGGGAGGCCCAGACGGCTCCATCGCC
TTCGAGATGGACAGGGATCAGAACGCGGGGCTCAAACCGGCGCTAGAGAC
GCTCTTGaaggtgaagagggagatcCAAAGCACGAACGAGGTCACCTTTG
GGGATGTGTGTGCCTTTGCGGGCGCCGTGGCTATTGAGAGTACGGGCGGC
CCCCGGATCCCAGTCCAGCTCGGAAGGTAa
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Synonyms
Publications