rna4174, rna4174 (mRNA) Nannochloropsis gaditana

Overview
Namerna4174
Unique Namerna4174
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length415
Alignment locationCM002462.1:1039675..1040443 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101473g2.2500.mrna
Orig protein idgnl|cribi|Naga_101473g2.2500
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1039675..1040443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101473g2gene4017Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4174rna4174-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26508.1cds4164Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4174 ID=rna4174|Name=rna4174|organism=Nannochloropsis gaditana|type=mRNA|length=415bp
CTAACGTGCACCCCGGGCATTATCCCTTCGACTAATCCACCTTCCTCTTC
TCGCGCCCTCCCCTGCTTCCCTTCCATCCTCCTCACCACGCCCTCCCTTC
CCTCTCCTCCCATGGCCCGCAGACGTCTTGGTCTGGATATTCGGCGCCTG
GCTTCCGGTGGCGGCATGGGCCGCCTCCTCTCTCTATTTGGCGCGAAAAG
CACGGCGGCCGTACGGAGGCGGGACAGGGAGGGAGAGAGGGGGGGAAGGA
GGGCTGGGGGAGGCGGTGGTGAGGGAAGGGGGGTATGCACAGGCGCTCTT
GCGAAGGGAGGGAGAGCGGGTCTAGGGGGGGAAAAGGGGAGACCAGCCTG
GAGCGAATAGATTGTACACAGTTTGCATGTAAAAGAAAACACGGACACGC
TTCACATGGGGCAGA
back to top

protein sequence of rna4174

>rna4174-protein ID=rna4174-protein|Name=rna4174|organism=Nannochloropsis gaditana|type=polypeptide|length=185bp
MGAGMELPVDNQSRLAVGSIGMGFSVLLCITASVRLSRFCLAYEWRFREI
VSDSFGRKRLAIHLVLVAGTWFVIPLYALLLHARPPHPSTLSSLLSSFHF
LFSSSLPSSSFPSLSLFEPAPSSSPTFCMGLLALIRFQLLCTLASLGLVL
SDWRIDVYEAPLHRARRVWMYELRDAVTAGLLCLA
back to top

mRNA from alignment at CM002462.1:1039675..1040443-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4174 ID=rna4174|Name=rna4174|organism=Nannochloropsis gaditana|type=mRNA|length=769bp|location=Sequence derived from alignment at CM002462.1:1039675..1040443- (Nannochloropsis gaditana)
GCACAGCTACTCCAGACTATGATGTATCTCATCTGCGATTGATGCCACAT
AATCGCCATTGATCCAGTCCTGCAAGACCAGTGCGTCCAATCCGTGGTAC
ATTTCTAGGCCATCGCACAAGCGCTTGTCGCCATGGGCGCGGGGATGGAG
CTTCCTGTGGATAATCAAAGCCGCCTGGCTGTAGGCTCGATTGGGATGGG
ATTCTCTGTCCTCTTATGCATTACAGCTTCTGTCCGCCTCTCCAGATTTT
GTCTGGCGTATGAATGGCGTTTCCGTGAGATTGTGAGGTAAGTGGAAAGA
AGGAAGGGCAATCGACGCAACAGGGGTGGGGGAAACTCAAGAACCGTGTA
CAATCTTTCACGCACAGCGACTCATTTGGACGCAAGCGCTTGGCAATTCA
TCTTGTCCTCGTTGCAGGAACGTGGTTCGTCATTCCGCTCTACGCGCTCC
TCCTTCACGCCCGCCCCCCCCACCCCTCCACCCTCTCCTCTCTCCTCTCC
TCCTTTCACTTCCTCTTCTCCTCCTCCTTGCCCTCCTCCTCCTTCCCCTC
CCTCTCGCTCTTTGAGCCGGCACCCTCTTCCTCTCCTACCTTCTGCATGG
GCCTGCTGGCCCTCATCCGTTTCCAACTTCTGTGCACATTGGCCAGCCTG
GGCTTGGTCCTCAGCGATTGGCGCATCGACGTGTACGAAGCCCCCTTGCA
CCGCGCCCGTCGCGTGTGGATGTATGAGCTGCGAGACGCCGTGACGGCCG
GCTTGTTATGCTTGGCCTT
back to top

Coding sequence (CDS) from alignment at CM002462.1:1039675..1040443-

>rna4174 ID=rna4174|Name=rna4174|organism=Nannochloropsis gaditana|type=CDS|length=1114bp|location=Sequence derived from alignment at CM002462.1:1039675..1040443- (Nannochloropsis gaditana)
CGACTCATTTGGACGCAAGCGCTTGGCAATTCATCTTGTCCTCGTTGCAG
GAACGTGGTTCGTCATTCCGCTCTACGCGCTCCTCCTTCACGCCCGCCCC
CCCCACCCCTCCACCCTCTCCTCTCTCCTCTCCTCCTTTCACTTCCTCTT
CTCCTCCTCCTTGCCCTCCTCCTCCTTCCCCTCCCTCTCGCTCTTTGAGC
CGGCACCCTCTTCCTCTCCTACCTTCTGCATGGGCCTGCTGGCCCTCATC
CGTTTCCAACTTCTGTGCACATTGGCCAGCCTGGGCTTGGTCCTCAGCGA
TTGGCGCATCGACGTGTACGAAGCCCCCTTGCACCGCGCCCGTCGCGTGT
GGATGTATGAGCTGCGAGACGCCGTGACGGCCGGCTTGTTATGCTTGGCC
TTATGGGCGCGGGGATGGAGCTTCCTGTGGATAATCAAAGCCGCCTGGCT
GTAGGCTCGATTGGGATGGGATTCTCTGTCCTCTTATGCATTACAGCTTC
TGTCCGCCTCTCCAGATTTTGTCTGGCGTATGAATGGCGTTTCCGTGAGA
TTGTGAGCGACTCATTTGGACGCAAGCGCTTGGCAATTCATCTTGTCCTC
GTTGCAGGAACGTGGTTCGTCATTCCGCTCTACGCGCTCCTCCTTCACGC
CCGCCCCCCCCACCCCTCCACCCTCTCCTCTCTCCTCTCCTCCTTTCACT
TCCTCTTCTCCTCCTCCTTGCCCTCCTCCTCCTTCCCCTCCCTCTCGCTC
TTTGAGCCGGCACCCTCTTCCTCTCCTACCTTCTGCATGGGCCTGCTGGC
CCTCATCCGTTTCCAACTTCTGTGCACATTGGCCAGCCTGGGCTTGGTCC
TCAGCGATTGGCGCATCGACGTGTACGAAGCCCCCTTGCACCGCGCCCGT
CGCGTGTGGATGTATGAGCTGCGAGACGCCGTGACGGCCGGCTTGTTATG
CTTGGCCTTATGGGCGCGGGGATGGAGCTTCCTGTGGATAATCAAAGCCG
CCTGGCTGTAGGCTCGATTGGGATGGGATTCTCTGTCCTCTTATGCATTA
CAGCTTCTGTCCGCCTCTCCAGATTTTGTCTGGCGTATGAATGGCGTTTC
CGTGAGATTGTGAG
back to top
Synonyms
Publications