EWM26508.1, cds4164 (CDS) Nannochloropsis gaditana

Overview
NameEWM26508.1
Unique Namecds4164
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1040157..1040311 -
Alignment locationCM002462.1:1039675..1040076 -

Link to JBrowse

Properties
Property NameValue
Start range1039675
Start range.
Protein idEWM26508.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101473g2.2500.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1040157..1040311 -
CM002462.1supercontigCM002462.1:1039675..1040076 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of EWM26508.1 vs. NCBI_GenBank
Match: gi|585108575|gb|EWM26508.1| (hypothetical protein Naga_101473g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 365.155 bits (936), Expect = 1.295e-127
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 0 
Query:    1 MGAGMELPVDNQSRLAVGSIGMGFSVLLCITASVRLSRFCLAYEWRFREIVSDSFGRKRLAIHLVLVAGTWFVIPLYALLLHARPPHPSTLSSLLSSFHFLFSSSLPSSSFPSLSLFEPAPSSSPTFCMGLLALIRFQLLCTLASLGLVLSDWRIDVYEAPLHRARRVWMYELRDAVTAGLLCLA 185
            MGAGMELPVDNQSRLAVGSIGMGFSVLLCITASVRLSRFCLAYEWRFREIVSDSFGRKRLAIHLVLVAGTWFVIPLYALLLHARPPHPSTLSSLLSSFHFLFSSSLPSSSFPSLSLFEPAPSSSPTFCMGLLALIRFQLLCTLASLGLVLSDWRIDVYEAPLHRARRVWMYELRDAVTAGLLCLA
Sbjct:    1 MGAGMELPVDNQSRLAVGSIGMGFSVLLCITASVRLSRFCLAYEWRFREIVSDSFGRKRLAIHLVLVAGTWFVIPLYALLLHARPPHPSTLSSLLSSFHFLFSSSLPSSSFPSLSLFEPAPSSSPTFCMGLLALIRFQLLCTLASLGLVLSDWRIDVYEAPLHRARRVWMYELRDAVTAGLLCLA 185
The following BLAST results are available for this feature:
BLAST of EWM26508.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108575|gb|EWM26508.1|1.295e-127100.00hypothetical protein Naga_101473g2, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4174rna4174Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications