rna4171, rna4171 (mRNA) Nannochloropsis gaditana

Overview
Namerna4171
Unique Namerna4171
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length371
Alignment locationCM002462.1:1035743..1036124 +

Link to JBrowse

Properties
Property NameValue
Productlysosomal alpha-mannosidase
Orig transcript idgnl|cribi|Naga_103807g1.4081.mrna
Orig protein idgnl|cribi|Naga_103807g1.4081
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1035743..1036124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103807g1gene4014Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4171rna4171-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26512.1cds4161Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4171 ID=rna4171|Name=rna4171|organism=Nannochloropsis gaditana|type=mRNA|length=371bp
TAAACAGGGTAACCGGAGTCGCAGGTTTGCATTTTTCTGCCACATTGTTA
GGACAAGTAACAATGGGCAAGCCGGCCATTCTGCTGCGCATCGCCCTCCT
TCTTGGTTCTTTTAGCCCCGGAATTCTTGCCAGCGAGTCCACCAGGACGA
AAGCGACGCCACCAAAGCCATTTTCGGTCGGAGCTCATGAGTCGTGGCCC
CCGGTTTACAACGTGACCTCGCGTTGCTGCGACGACTCCAAGCTGAACGT
GCACCTGGTTTGTCATACTCACGACGACGTTGGATGGCTGAAGACCATCG
ATCAGTACTACCTGGGGTCCAACAACTCGATCCAGGCACATTCGCTCAGT
AGGTGGTCCTCGAGGTGCTGA
back to top

protein sequence of rna4171

>rna4171-protein ID=rna4171-protein|Name=rna4171|organism=Nannochloropsis gaditana|type=polypeptide|length=114bp
FLPPSLPSLPPFSELLIPPAHPARPPARPPSRPPSRPFQAVFTGVFPSGN
YGPPPGFCFDQFCADAPINDNPSLTDENVQVLPPSIPPSLPPFSLPSFPP
SSLLDRNFGATWGV
back to top

mRNA from alignment at CM002462.1:1035743..1036124+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4171 ID=rna4171|Name=rna4171|organism=Nannochloropsis gaditana|type=mRNA|length=382bp|location=Sequence derived from alignment at CM002462.1:1035743..1036124+ (Nannochloropsis gaditana)
ttccttcctccctccctcccctccctccctcccttctccgaACTTTTGAT
CCCTCCCGCTcatcccgcccgccctcccgcccgccctccttcccgccctc
cctcccgccctttccaaGCGGTCTTCACGGGggtcttcccctccggaAAC
tacggccctcctccaggcttcTGCTTCGACCAATTCTGCGCCGATGCGCC
CATCAATGACAATCCTTCCCTGACCGACGAGAACGTGCAGgtgctccctc
cttcaatccctccttcccttcctcccttctccctcccttcctttcctcct
tcctccctcttggacCGAAACTTCGGGGCAACGTGGGGCGTCTGAGGAAG
AACTTCTCTTCTGCCTTTCCtattccctctcc
back to top

Coding sequence (CDS) from alignment at CM002462.1:1035743..1036124+

>rna4171 ID=rna4171|Name=rna4171|organism=Nannochloropsis gaditana|type=CDS|length=345bp|location=Sequence derived from alignment at CM002462.1:1035743..1036124+ (Nannochloropsis gaditana)
ttccttcctccctccctcccctccctccctcccttctccgaACTTTTGAT
CCCTCCCGCTcatcccgcccgccctcccgcccgccctccttcccgccctc
cctcccgccctttccaaGCGGTCTTCACGGGggtcttcccctccggaAAC
tacggccctcctccaggcttcTGCTTCGACCAATTCTGCGCCGATGCGCC
CATCAATGACAATCCTTCCCTGACCGACGAGAACGTGCAGgtgctccctc
cttcaatccctccttcccttcctcccttctccctcccttcctttcctcct
tcctccctcttggacCGAAACTTCGGGGCAACGTGGGGCGTCTGA
back to top
Synonyms
Publications