EWM26512.1, cds4161 (CDS) Nannochloropsis gaditana

Overview
NameEWM26512.1
Unique Namecds4161
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1035743..1036087 +

Link to JBrowse

Properties
Property NameValue
Start range1035743
Start range.
Protein idEWM26512.1
Productlysosomal alpha-mannosidase
Partialtrue
Orig transcript idgnl|cribi|Naga_103807g1.4081.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1035743..1036087 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027291Glyco_hydro_38/57_N
Homology
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|585108582|gb|EWM26512.1| (lysosomal alpha-mannosidase, partial [Nannochloropsis gaditana])

HSP 1 Score: 213.772 bits (543), Expect = 5.068e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query:    1 FLPPSLPSLPPFSELLIPPAHPARPPARPPSRPPSRPFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQVLPPSIPPSLPPFSLPSFPPSSLLDRNFGATWGV 114
            FLPPSLPSLPPFSELLIPPAHPARPPARPPSRPPSRPFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQVLPPSIPPSLPPFSLPSFPPSSLLDRNFGATWGV
Sbjct:    1 FLPPSLPSLPPFSELLIPPAHPARPPARPPSRPPSRPFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQVLPPSIPPSLPPFSLPSFPPSSLLDRNFGATWGV 114          
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|828197619|ref|XP_012553947.1| (PREDICTED: lysosomal alpha-mannosidase-like [Hydra vulgaris])

HSP 1 Score: 65.4698 bits (158), Expect = 4.269e-10
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0
Query:   41 VFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQ 80
            +FTGV  +G Y PPPGFC+D+FCAD PI DNP+L D NV+
Sbjct:  218 IFTGVLYNG-YDPPPGFCYDEFCADPPIQDNPTLFDMNVK 256          
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|156374101|ref|XP_001629647.1| (predicted protein [Nematostella vectensis] >gi|156216652|gb|EDO37584.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 63.929 bits (154), Expect = 1.389e-9
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0
Query:   41 VFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQ 80
            +FTGV  +G Y PPPGFCFDQFC+D PI D+P L DENV+
Sbjct:  230 IFTGVLYNG-YNPPPGFCFDQFCSDQPIQDDPRLYDENVK 268          
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|298706073|emb|CBJ29183.1| (Alpha-mannosidase, family GH38 [Ectocarpus siliculosus])

HSP 1 Score: 63.5438 bits (153), Expect = 1.848e-9
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0
Query:   41 VFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQ 80
            +FTGVF SGNYGPP GFCFDQ C D P+ D+P + D NV+
Sbjct:  216 IFTGVFHSGNYGPPVGFCFDQACQDEPMMDDPLMVDYNVE 255          
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|1176069825|ref|XP_020604767.1| (lysosomal alpha-mannosidase-like [Orbicella faveolata])

HSP 1 Score: 58.9214 bits (141), Expect = 7.661e-8
Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0
Query:   41 VFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQ 80
            +FTGV  +G Y PP GFCFDQFC D PI D+P L D NVQ
Sbjct:  431 IFTGVLYNG-YNPPKGFCFDQFCTDPPIQDDPRLFDVNVQ 469          
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|1043430383|gb|OCA43011.1| (hypothetical protein XENTR_v90009819mg [Xenopus tropicalis])

HSP 1 Score: 58.9214 bits (141), Expect = 8.016e-8
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0
Query:   35 SRPFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQVL 82
            S P+  +FTGV P+G Y PP GFC+DQ C D PI D+PS+ D N  V+
Sbjct:  222 SPPYADLFTGVLPNG-YNPPDGFCWDQLCDDTPIIDDPSVEDYNADVI 268          
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|1041059497|ref|XP_017279237.1| (PREDICTED: lysosomal alpha-mannosidase [Kryptolebias marmoratus])

HSP 1 Score: 58.5362 bits (140), Expect = 1.347e-7
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0
Query:   37 PFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENV 79
            P   +FTG+ P+G Y PP GFC+DQ C+DAPI D+P L D NV
Sbjct:  250 PMADLFTGILPNG-YNPPEGFCWDQLCSDAPIRDDPDLEDYNV 291          
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|928056352|ref|XP_013877498.1| (PREDICTED: lysosomal alpha-mannosidase [Austrofundulus limnaeus])

HSP 1 Score: 58.151 bits (139), Expect = 1.469e-7
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0
Query:   37 PFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENV 79
            P   +FTG+ P+G Y PP GFC+DQ C+DAPI D+P L D NV
Sbjct:  237 PMADLFTGILPNG-YNPPEGFCWDQLCSDAPIRDDPDLDDYNV 278          
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|1072271695|ref|XP_018421620.1| (PREDICTED: lysosomal alpha-mannosidase [Nanorana parkeri])

HSP 1 Score: 57.3806 bits (137), Expect = 3.226e-7
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 0
Query:   41 VFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQVL 82
            +FTGV P+G Y PP GFC+DQ C+DAPI D+P + D N  V+
Sbjct:  230 LFTGVLPNG-YNPPEGFCWDQLCSDAPIMDDPQMEDYNADVM 270          
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|1007710235|ref|XP_015824005.1| (PREDICTED: lysosomal alpha-mannosidase [Nothobranchius furzeri])

HSP 1 Score: 56.9954 bits (136), Expect = 3.659e-7
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 0
Query:   37 PFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENV 79
            P   +FTG+ P+G Y PP GFC+DQ C DAPI D+P L D NV
Sbjct:  236 PMADLFTGILPNG-YNPPDGFCWDQLCDDAPIRDDPDLEDYNV 277          
The following BLAST results are available for this feature:
BLAST of EWM26512.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108582|gb|EWM26512.1|5.068e-70100.00lysosomal alpha-mannosidase, partial [Nannochlorop... [more]
gi|828197619|ref|XP_012553947.1|4.269e-1065.00PREDICTED: lysosomal alpha-mannosidase-like [Hydra... [more]
gi|156374101|ref|XP_001629647.1|1.389e-967.50predicted protein [Nematostella vectensis] >gi|156... [more]
gi|298706073|emb|CBJ29183.1|1.848e-965.00Alpha-mannosidase, family GH38 [Ectocarpus silicul... [more]
gi|1176069825|ref|XP_020604767.1|7.661e-865.00lysosomal alpha-mannosidase-like [Orbicella faveol... [more]
gi|1043430383|gb|OCA43011.1|8.016e-854.17hypothetical protein XENTR_v90009819mg [Xenopus tr... [more]
gi|1041059497|ref|XP_017279237.1|1.347e-758.14PREDICTED: lysosomal alpha-mannosidase [Kryptolebi... [more]
gi|928056352|ref|XP_013877498.1|1.469e-758.14PREDICTED: lysosomal alpha-mannosidase [Austrofund... [more]
gi|1072271695|ref|XP_018421620.1|3.226e-757.14PREDICTED: lysosomal alpha-mannosidase [Nanorana p... [more]
gi|1007710235|ref|XP_015824005.1|3.659e-758.14PREDICTED: lysosomal alpha-mannosidase [Nothobranc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4171rna4171Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications