EWM26512.1, cds4161 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|585108582|gb|EWM26512.1| (lysosomal alpha-mannosidase, partial [Nannochloropsis gaditana]) HSP 1 Score: 213.772 bits (543), Expect = 5.068e-70 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
Query: 1 FLPPSLPSLPPFSELLIPPAHPARPPARPPSRPPSRPFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQVLPPSIPPSLPPFSLPSFPPSSLLDRNFGATWGV 114
FLPPSLPSLPPFSELLIPPAHPARPPARPPSRPPSRPFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQVLPPSIPPSLPPFSLPSFPPSSLLDRNFGATWGV
Sbjct: 1 FLPPSLPSLPPFSELLIPPAHPARPPARPPSRPPSRPFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQVLPPSIPPSLPPFSLPSFPPSSLLDRNFGATWGV 114
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|828197619|ref|XP_012553947.1| (PREDICTED: lysosomal alpha-mannosidase-like [Hydra vulgaris]) HSP 1 Score: 65.4698 bits (158), Expect = 4.269e-10 Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0
Query: 41 VFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQ 80
+FTGV +G Y PPPGFC+D+FCAD PI DNP+L D NV+
Sbjct: 218 IFTGVLYNG-YDPPPGFCYDEFCADPPIQDNPTLFDMNVK 256
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|156374101|ref|XP_001629647.1| (predicted protein [Nematostella vectensis] >gi|156216652|gb|EDO37584.1| predicted protein [Nematostella vectensis]) HSP 1 Score: 63.929 bits (154), Expect = 1.389e-9 Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 0
Query: 41 VFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQ 80
+FTGV +G Y PPPGFCFDQFC+D PI D+P L DENV+
Sbjct: 230 IFTGVLYNG-YNPPPGFCFDQFCSDQPIQDDPRLYDENVK 268
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|298706073|emb|CBJ29183.1| (Alpha-mannosidase, family GH38 [Ectocarpus siliculosus]) HSP 1 Score: 63.5438 bits (153), Expect = 1.848e-9 Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0
Query: 41 VFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQ 80
+FTGVF SGNYGPP GFCFDQ C D P+ D+P + D NV+
Sbjct: 216 IFTGVFHSGNYGPPVGFCFDQACQDEPMMDDPLMVDYNVE 255
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|1176069825|ref|XP_020604767.1| (lysosomal alpha-mannosidase-like [Orbicella faveolata]) HSP 1 Score: 58.9214 bits (141), Expect = 7.661e-8 Identity = 26/40 (65.00%), Postives = 29/40 (72.50%), Query Frame = 0
Query: 41 VFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQ 80
+FTGV +G Y PP GFCFDQFC D PI D+P L D NVQ
Sbjct: 431 IFTGVLYNG-YNPPKGFCFDQFCTDPPIQDDPRLFDVNVQ 469
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|1043430383|gb|OCA43011.1| (hypothetical protein XENTR_v90009819mg [Xenopus tropicalis]) HSP 1 Score: 58.9214 bits (141), Expect = 8.016e-8 Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 0
Query: 35 SRPFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQVL 82
S P+ +FTGV P+G Y PP GFC+DQ C D PI D+PS+ D N V+
Sbjct: 222 SPPYADLFTGVLPNG-YNPPDGFCWDQLCDDTPIIDDPSVEDYNADVI 268
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|1041059497|ref|XP_017279237.1| (PREDICTED: lysosomal alpha-mannosidase [Kryptolebias marmoratus]) HSP 1 Score: 58.5362 bits (140), Expect = 1.347e-7 Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0
Query: 37 PFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENV 79
P +FTG+ P+G Y PP GFC+DQ C+DAPI D+P L D NV
Sbjct: 250 PMADLFTGILPNG-YNPPEGFCWDQLCSDAPIRDDPDLEDYNV 291
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|928056352|ref|XP_013877498.1| (PREDICTED: lysosomal alpha-mannosidase [Austrofundulus limnaeus]) HSP 1 Score: 58.151 bits (139), Expect = 1.469e-7 Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 0
Query: 37 PFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENV 79
P +FTG+ P+G Y PP GFC+DQ C+DAPI D+P L D NV
Sbjct: 237 PMADLFTGILPNG-YNPPEGFCWDQLCSDAPIRDDPDLDDYNV 278
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|1072271695|ref|XP_018421620.1| (PREDICTED: lysosomal alpha-mannosidase [Nanorana parkeri]) HSP 1 Score: 57.3806 bits (137), Expect = 3.226e-7 Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 0
Query: 41 VFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENVQVL 82
+FTGV P+G Y PP GFC+DQ C+DAPI D+P + D N V+
Sbjct: 230 LFTGVLPNG-YNPPEGFCWDQLCSDAPIMDDPQMEDYNADVM 270
BLAST of EWM26512.1 vs. NCBI_GenBank
Match: gi|1007710235|ref|XP_015824005.1| (PREDICTED: lysosomal alpha-mannosidase [Nothobranchius furzeri]) HSP 1 Score: 56.9954 bits (136), Expect = 3.659e-7 Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 0
Query: 37 PFQAVFTGVFPSGNYGPPPGFCFDQFCADAPINDNPSLTDENV 79
P +FTG+ P+G Y PP GFC+DQ C DAPI D+P L D NV
Sbjct: 236 PMADLFTGILPNG-YNPPDGFCWDQLCDDAPIRDDPDLEDYNV 277 The following BLAST results are available for this feature:
BLAST of EWM26512.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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