rna4170, rna4170 (mRNA) Nannochloropsis gaditana

Overview
Namerna4170
Unique Namerna4170
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length627
Alignment locationCM002462.1:1034782..1035523 +

Link to JBrowse

Properties
Property NameValue
Productlysosomal alpha-mannosidase
Orig transcript idgnl|cribi|Naga_101437g1.4762.mrna
Orig protein idgnl|cribi|Naga_101437g1.4762
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1034782..1035523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101437g1gene4013Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4170rna4170-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26513.1cds4160Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4170 ID=rna4170|Name=rna4170|organism=Nannochloropsis gaditana|type=mRNA|length=627bp
CTCTTTGTCGCAGGGCAAGATGGAGACCAAGACGCAGAAGCAATGCAAAG
ACTACATTCGGCCCTTGTTCAAGCTCTGCAAAGCGAAACAGGTTCCGGAC
GGGATTCGCGCCAATTTAATCGAGATGGTGGATTTGTGCGAGGCGGGAGA
GTTCGTAAAGGCGCACGAAGTCTACCTCCGGACGGCCATCGGGAACGCCC
CATGGCCCATCGGGATCACCATGGTGGGTATCCACGAGCGCACGGGACGG
GAAAAGATTTCATCGTCCAAGGTGGCGCACATCATGAATAACGAGATGCA
GCGGAAGTATCTGACGTCCATAAAGCGCCTCATGCGCTTCGCACAGGAGA
AACGCCCGGACGTCGATCCCAGCAAAAAGTTTCTTTAAAAGGTCAACTTG
GGGTGGGGTGAAAGAGAATTTCAAGAATACGAGTAGGACATGTTGAGTCA
TGGTTGGAAAGAGGTGATTTATCAAGGACGTATATGGCAGGTGCTTGTAC
AAAAGAAAAACACAATTGACGAAAAGATGAAGCACTTCACTTCACGACGG
ACGACCTTTGTCTGAACTCGTGATCGATGACCTCCTCACCGGAAACGACA
CGACTGAGAAAGTCACGAAAATGACCA
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protein sequence of rna4170

>rna4170-protein ID=rna4170-protein|Name=rna4170|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MGKPAILLRIALLLGSFSPGILASESTRTKATPPKPFSVGAHESWPPVYN
VTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQAHSLSRWSS
RC
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mRNA from alignment at CM002462.1:1034782..1035523+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4170 ID=rna4170|Name=rna4170|organism=Nannochloropsis gaditana|type=mRNA|length=742bp|location=Sequence derived from alignment at CM002462.1:1034782..1035523+ (Nannochloropsis gaditana)
TAAACAGGGTAACCGGAGTCGCAGGTTTGCATTTTTCTGCCACATTGTTA
GGACAAGTAACAATGGGCAAGCCGGCCATTCTGCTGcgcatcgccctcct
tcttggttCTTTTAGCCCCGGAATTCTTGCCAGCGAGTCCACCAGGACGA
AAGCGACGCCACCAAAGCCATTTTCGGTCGGAGCTCATGAGTCGTGGCCC
CCGGTTTACAACGTGACCTCGCGTTGCTGGTAGGAGCACATCCACCCTCT
TTGTATCGTGTTCTAGGTCATCGGCACGATGCGGCATCTCACCCTCCTTG
TTTCCTATAATATCTTGTCCCGTGGTCTTCGACGTCCTTGATATGTACAG
CGACGACTCCAAGCTGAACGTGCACCTGGTTTGTCATACTCACGACGACG
TTGGTACGTGCTactcctcccggccctcccaGCCCCACCTGTGCATGCCT
CACGGTTCCCAccatgccccccctcccttgccctccctgctggCTCGACC
GTCAATCCTTTGGCAGGATGGCTGAAGACCATCGATCAGTACTACCTGGG
GTCCAACAACTCGATCCAGGCAcgtggacgggaggaagggaaggagggag
ggggggagggaaggaaggaggaagggaaggaggcaaggaattggaggaaa
cgagggcgCTTGCCAGGTCACCCCTATGCTCGACCCCTTTTTCTGTCCTT
TTGTATCAAGATTCGCTCAGTAGGTGGTCCTCGAGGTGCTGA
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Coding sequence (CDS) from alignment at CM002462.1:1034782..1035523+

>rna4170 ID=rna4170|Name=rna4170|organism=Nannochloropsis gaditana|type=CDS|length=1236bp|location=Sequence derived from alignment at CM002462.1:1034782..1035523+ (Nannochloropsis gaditana)
ATGGGCAAGCCGGCCATTCTGCTGcgcatcgccctccttcttggttCTTT
TAGCCCCGGAATTCTTGCCAGCGAGTCCACCAGGACGAAAGCGACGCCAC
CAAAGCCATTTTCGGTCGGAGCTCATGAGTCGTGGCCCCCGGTTTACAAC
GTGACCTCGCGTTGCTGCGACGACTCCAAGCTGAACGTGCACCTGGTTTG
TCATACTCACGACGACGTTGGATGGCTGAAGACCATCGATCAGTACTACC
TGGGGTCCAACAACTCGATCCAGGCAcATTCGCTCAGTAGGTGGTCCTCG
AGGTGCTGAATGGGCAAGCCGGCCATTCTGCTGcgcatcgccctccttct
tggttCTTTTAGCCCCGGAATTCTTGCCAGCGAGTCCACCAGGACGAAAG
CGACGCCACCAAAGCCATTTTCGGTCGGAGCTCATGAGTCGTGGCCCCCG
GTTTACAACGTGACCTCGCGTTGCTGCGACGACTCCAAGCTGAACGTGCA
CCTGGTTTGTCATACTCACGACGACGTTGGATGGCTGAAGACCATCGATC
AGTACTACCTGGGGTCCAACAACTCGATCCAGGCAcATTCGCTCAGTAGG
TGGTCCTCGAGGTGCTGAATGGGCAAGCCGGCCATTCTGCTGcgcatcgc
cctccttcttggttCTTTTAGCCCCGGAATTCTTGCCAGCGAGTCCACCA
GGACGAAAGCGACGCCACCAAAGCCATTTTCGGTCGGAGCTCATGAGTCG
TGGCCCCCGGTTTACAACGTGACCTCGCGTTGCTGCGACGACTCCAAGCT
GAACGTGCACCTGGTTTGTCATACTCACGACGACGTTGGATGGCTGAAGA
CCATCGATCAGTACTACCTGGGGTCCAACAACTCGATCCAGGCAcATTCG
CTCAGTAGGTGGTCCTCGAGGTGCTGAATGGGCAAGCCGGCCATTCTGCT
GcgcatcgccctccttcttggttCTTTTAGCCCCGGAATTCTTGCCAGCG
AGTCCACCAGGACGAAAGCGACGCCACCAAAGCCATTTTCGGTCGGAGCT
CATGAGTCGTGGCCCCCGGTTTACAACGTGACCTCGCGTTGCTGCGACGA
CTCCAAGCTGAACGTGCACCTGGTTTGTCATACTCACGACGACGTTGGAT
GGCTGAAGACCATCGATCAGTACTACCTGGGGTCCAACAACTCGATCCAG
GCAcATTCGCTCAGTAGGTGGTCCTCGAGGTGCTGA
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Synonyms
Publications