EWM26513.1, cds4160 (CDS) Nannochloropsis gaditana

Overview
NameEWM26513.1
Unique Namecds4160
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1034844..1035010 +
Alignment locationCM002462.1:1035132..1035184 +
Alignment locationCM002462.1:1035298..1035354 +
Alignment locationCM002462.1:1035492..1035523 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26513.1
Productlysosomal alpha-mannosidase
Orig transcript idgnl|cribi|Naga_101437g1.4762.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1034844..1035010 +
CM002462.1supercontigCM002462.1:1035132..1035184 +
CM002462.1supercontigCM002462.1:1035298..1035354 +
CM002462.1supercontigCM002462.1:1035492..1035523 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0030246carbohydrate binding
GO:0003824catalytic activity
GO:0004559alpha-mannosidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005773vacuole
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011330Glyco_hydro/deAcase_b/a-brl
IPR027291Glyco_hydro_38/57_N
IPR000602Glyco_hydro_38_N
Homology
BLAST of EWM26513.1 vs. NCBI_GenBank
Match: gi|585108584|gb|EWM26513.1| (lysosomal alpha-mannosidase [Nannochloropsis gaditana])

HSP 1 Score: 213.001 bits (541), Expect = 4.470e-70
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
Query:    1 MGKPAILLRIALLLGSFSPGILASESTRTKATPPKPFSVGAHESWPPVYNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQAHSLSRWSSRC 102
            MGKPAILLRIALLLGSFSPGILASESTRTKATPPKPFSVGAHESWPPVYNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQAHSLSRWSSRC
Sbjct:    1 MGKPAILLRIALLLGSFSPGILASESTRTKATPPKPFSVGAHESWPPVYNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQAHSLSRWSSRC 102          
BLAST of EWM26513.1 vs. NCBI_GenBank
Match: gi|1052200804|ref|XP_017702115.1| (PREDICTED: alpha-mannosidase At3g26720-like [Phoenix dactylifera])

HSP 1 Score: 75.8702 bits (185), Expect = 1.542e-15
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   45 WPPV------YNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQA 92
            W PV      YN T R   D KLNVHLV HTHDDVGWLKT+DQYY+GSNNSIQ 
Sbjct:   22 WSPVGSKYIAYNTTQRIVPD-KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQG 74          
BLAST of EWM26513.1 vs. NCBI_GenBank
Match: gi|703097120|ref|XP_010096029.1| (Lysosomal alpha-mannosidase [Morus notabilis] >gi|587873659|gb|EXB62835.1| Lysosomal alpha-mannosidase [Morus notabilis])

HSP 1 Score: 77.7962 bits (190), Expect = 4.570e-15
Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 0
Query:   39 VGAHESWPPVYNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQAHSLSRW 98
            VG  ES   VYN +     D KLNVHLV H+HDDVGWLKT+DQYY+GSNNSIQA    RW
Sbjct:   20 VGVGESKYMVYNTSQGIVAD-KLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQAF-FQRW 77          
BLAST of EWM26513.1 vs. NCBI_GenBank
Match: gi|1208512663|gb|OWM71389.1| (hypothetical protein CDL15_Pgr005576 [Punica granatum])

HSP 1 Score: 78.5666 bits (192), Expect = 6.407e-15
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 0
Query:   48 VYNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQAHSLSRW 98
            VYN TS   D +KLNVHLV HTHDDVGWLKT+DQYY+GSNNSIQA    RW
Sbjct:   24 VYN-TSAGIDPNKLNVHLVPHTHDDVGWLKTVDQYYVGSNNSIQAF-FQRW 72          
BLAST of EWM26513.1 vs. NCBI_GenBank
Match: gi|672134764|ref|XP_008791035.1| (PREDICTED: alpha-mannosidase At3g26720 [Phoenix dactylifera])

HSP 1 Score: 78.1814 bits (191), Expect = 1.059e-14
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   45 WPPV------YNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQA 92
            W PV      YN T R   D KLNVHLV HTHDDVGWLKT+DQYY+GSNNSIQ 
Sbjct:   24 WAPVESEYIAYNTTQRIVPD-KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQG 76          
BLAST of EWM26513.1 vs. NCBI_GenBank
Match: gi|743813312|ref|XP_010929675.1| (PREDICTED: alpha-mannosidase At3g26720 [Elaeis guineensis])

HSP 1 Score: 77.7962 bits (190), Expect = 1.214e-14
Identity = 37/54 (68.52%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   45 WPPV------YNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQA 92
            W PV      YN T R   D KLNVHLV HTHDDVGWLKT+DQYY+GSNNSIQ 
Sbjct:   24 WSPVESNYIAYNTTQRIVPD-KLNVHLVAHTHDDVGWLKTVDQYYVGSNNSIQG 76          
BLAST of EWM26513.1 vs. NCBI_GenBank
Match: gi|763809408|gb|KJB76310.1| (hypothetical protein B456_012G082700 [Gossypium raimondii])

HSP 1 Score: 77.411 bits (189), Expect = 1.878e-14
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 0
Query:   43 ESWPPVYNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQAHSLSRW 98
            ES   VYN TS   D  K+NVHLV HTHDDVGWLKT+DQYY+GSNNSIQA    RW
Sbjct:   19 ESKYMVYN-TSAGIDAGKINVHLVPHTHDDVGWLKTVDQYYVGSNNSIQAF-FQRW 72          
BLAST of EWM26513.1 vs. NCBI_GenBank
Match: gi|703108513|ref|XP_010099053.1| (Lysosomal alpha-mannosidase [Morus notabilis] >gi|587887783|gb|EXB76513.1| Lysosomal alpha-mannosidase [Morus notabilis])

HSP 1 Score: 76.6406 bits (187), Expect = 3.358e-14
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   49 YNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQAHSLSRW 98
            YN TS    D+ +NVHLV HTHDDVGWLKTIDQYY+GSNNSIQA    RW
Sbjct:   28 YNTTSSVVADN-INVHLVAHTHDDVGWLKTIDQYYVGSNNSIQAF-FQRW 75          
BLAST of EWM26513.1 vs. NCBI_GenBank
Match: gi|950979591|ref|XP_014501899.1| (PREDICTED: alpha-mannosidase-like isoform X2 [Vigna radiata var. radiata])

HSP 1 Score: 75.8702 bits (185), Expect = 5.471e-14
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   49 YNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQAHSLSRW 98
            YN T+   D  K+NVHLV HTHDDVGWLKTIDQYY+GSNNSIQA    RW
Sbjct:   29 YNTTTSI-DPGKINVHLVPHTHDDVGWLKTIDQYYVGSNNSIQAF-FQRW 76          
BLAST of EWM26513.1 vs. NCBI_GenBank
Match: gi|1204906396|ref|XP_021285523.1| (probable alpha-mannosidase At5g13980 [Herrania umbratica])

HSP 1 Score: 75.8702 bits (185), Expect = 5.921e-14
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   43 ESWPPVYNVTSRCCDDSKLNVHLVCHTHDDVGWLKTIDQYYLGSNNSIQA 92
            ES   VYN TS+     KLNVHLV HTHDDVGWLKTIDQYY+GSNNSIQ 
Sbjct:   20 ESKYMVYNTTSKIVP-GKLNVHLVAHTHDDVGWLKTIDQYYVGSNNSIQG 68          
The following BLAST results are available for this feature:
BLAST of EWM26513.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108584|gb|EWM26513.1|4.470e-70100.00lysosomal alpha-mannosidase [Nannochloropsis gadit... [more]
gi|1052200804|ref|XP_017702115.1|1.542e-1568.52PREDICTED: alpha-mannosidase At3g26720-like [Phoen... [more]
gi|703097120|ref|XP_010096029.1|4.570e-1565.00Lysosomal alpha-mannosidase [Morus notabilis] >gi|... [more]
gi|1208512663|gb|OWM71389.1|6.407e-1574.51hypothetical protein CDL15_Pgr005576 [Punica grana... [more]
gi|672134764|ref|XP_008791035.1|1.059e-1468.52PREDICTED: alpha-mannosidase At3g26720 [Phoenix da... [more]
gi|743813312|ref|XP_010929675.1|1.214e-1468.52PREDICTED: alpha-mannosidase At3g26720 [Elaeis gui... [more]
gi|763809408|gb|KJB76310.1|1.878e-1469.64hypothetical protein B456_012G082700 [Gossypium ra... [more]
gi|703108513|ref|XP_010099053.1|3.358e-1472.00Lysosomal alpha-mannosidase [Morus notabilis] >gi|... [more]
gi|950979591|ref|XP_014501899.1|5.471e-1472.00PREDICTED: alpha-mannosidase-like isoform X2 [Vign... [more]
gi|1204906396|ref|XP_021285523.1|5.921e-1474.00probable alpha-mannosidase At5g13980 [Herrania umb... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4170rna4170Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications