rna4163, rna4163 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4163
Unique Name	rna4163
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	213
Alignment location	CM002462.1:1017411..1020167 +

Link to JBrowse

Properties


Property Name	Value
Product	cullin family
Orig transcript id	gnl\|cribi\|Naga_100398g1.1309.mrna
Orig protein id	gnl\|cribi\|Naga_100398g1.1309
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:1017411..1020167 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100398g1	gene4006	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4163	rna4163-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26520.1	cds4153	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:1017411..1020167+
coding sequence from alignment at CM002462.1:1017411..1020167+

mRNA sequence

>rna4163 ID=rna4163|Name=rna4163|organism=Nannochloropsis gaditana|type=mRNA|length=213bp
ATGCACGATGTGGTCAACTTATTCACCTACCTGACGGACAAGGACCTTTT
TGCCGAAATTTACCGAAATCAGTTGGCCAAGCGTCTTTTAAACGCGCGCT
CCTCCTCGGACGACTGGGAGAAGCTGATGATTGGAAAACTCAAACACCGA
TGCGGCGCTCAATTTACTGGCAAGGCTGAAGGGGTCTTGACGAGAACCAA
GCGTCGTGCCTGA

protein sequence of rna4163

>rna4163-protein ID=rna4163-protein|Name=rna4163|organism=Nannochloropsis gaditana|type=polypeptide|length=238bp
MAPDDFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRL
AWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKER
LNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRV
IRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLS
QLAFFRPNPKVVKQRIHALIDREYLERDENPNQYKYLA

mRNA from alignment at CM002462.1:1017411..1020167+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4163 ID=rna4163|Name=rna4163|organism=Nannochloropsis gaditana|type=mRNA|length=2757bp|location=Sequence derived from alignment at CM002462.1:1017411..1020167+ (Nannochloropsis gaditana)
gtCCCTCCACCGAAGGACAAGGCCACCGAGGCAAGCGCCAGCTCGTCGAG
CGTCCCTCTcctgggaggaaaaatggcCCCAGACGATTTCTCTGTCAAAG
TCCTGACGACCGGGTATTGGCCGTCCTACACgcaggtgagggaaagggag
gggggaggaaaagggaagcacCAGGGGAGCTACAGGACCCTTGTTTGGGG
TGAagacaggagagagggaaagagactGACCATGAGATCCCATTTTCCCC
GCAGTTGGATGTCCGGCTGCCCGACGAAATGCTTCGCTGCACCCAGGTCC
GTCccatgcctctccctctttcttccgcgcgccctcctcttttctctctt
taatcagtgcctccctccctccttccctccttccctccctccctcctcct
ccccggtcTCCAGGCCTTCAAAGCCTGGTACGACCTCAAGAATTCGCGGC
GACGCCTCGCATGGCAGCACTCCTTGGGATCTGCAACCCTCCGGGCGaaa
tatggcgcgaaaacATACGATTTGCAAACAAACACACTGCAGGTAGGATa
tcagggaggggagaggggggagctcgggagggagggaggaaaagtgtCAC
GGCCTTGATTTAGATATACTGGCGGATGAGATGCTTCACACATtaccctt
ccttcttctttcctcccttctcctcgctctccctccttggcacAGGcggt
tctcctcctctccttccagtcggacgaggagagccTCGGTCTTTCCACCC
TTAAAGAACGATTGAACGTCCCGACCGAGCAGAtgaagcccctcctccac
tccctctcctgcggAAGATACAAGGTGGGGGAAtggtggacggggagggt
ggaaaagagggagggagggaaggagggagggagggagggagggagggagg
aaaataaaCTGTTCTTGTACGTAGGGACGAAAGAGGCACGAAAAGCCCTC
ACCGGGGATTCTATTTCttgacttcctccccttcttccctcccatcttct
CTGCTCAGATCTTGAAGAAGCAGCCCGCCTCGGACAAGATCAAGGAGACA
GACACCTTCACGATCaacccttccttctcctgcccccagCGCGTGATCCG
TATTCCGATGGCCACCATTGAGGAGAGCCACAACCCGAACAGAATCGAGG
TAAAGATCAACCACATAAGGGGTAGAGTGAGCCGAATGGACGCTCATTGT
TTTCCCGTCAATGGGTTGTTGGGGAATCACgatgggagaagaaaggggaa
aataaggagggaggggggggtgcgTGGGCAGCAAGTCGACGTGCTGTTAG
GGGAGCGCCGGGGCGTCGGACGGTCTCTCTGAACGCACAGCACGAGGCTC
ATTCTCTACTCTTTCCCCTTATGTTCGTCGCGCGTCCGGGCACAGGAGGA
TCGTTCGATCGCGATTGAGGCGGCGATTGTACGCATTATGAAGGCGCGCA
AGGTGCGTCATCCGGAGaactcttccttttcctcccttttcctcctcctc
tctgcctctgCCCCCCACCGTCCTTGGTACCCATGTCTTCCCCGGGAGGG
TGGCGCGGGGGCATCGTTGTCTCCCTGGCCGCGATGGAAATGTTCGACGC
TCCGCTAGTCGTCTGGCGCCTTGCCCCTATTTTGGATTCTTGTCCGGTCC
GGACTGTCCTGTCTTGTGTGCCccactcccctctccctagGTACCCGTCC
TCTTTGATCCTCAGGCGCAACCTCCCTCACTCTACCCTCttgctttcccg
cccttttctgCCCTTTCCACACCACCACACCTTAACAGGTTCTGACACAT
CAACAGCTCACATCCGAAGTGCTCTCTCAACTCGCTTTCTTTCGGCCAAA
TCCTAAAGTGGTTAAACAACGCATCCACGCTTTGATTGACAGGTGAGGGA
AATCGGTTGGCAGGGGCAGACCACtaggaaggggagagcgtTTTGtagca
gagaggggaggattGGTCCTTTTTTGTGGCATGTGTCTGCTTTCGACAGT
AGTAAATTTTGAGGGGAGAATGGAACATGTATTTATAATAATATTCAAGG
CTGTATGCGAGAGGGAAACTGCAGCGCTCACGGGccactttcctttccac
GGGATCAAACAGGGAATACTTGGAACGAGACGAGAACCCTAACCAGTACA
AGTATCTGGCCTAGGCGTGAAAGCTGATGTGAGGTGTGACGGTTGAGAAG
ATAGcgtgaagagggtggaggagattgaGGGATTGAGATGAGATACCTTA
GTCTGAAGAGCGATGGGTTGCGTGAAATCTGTGACATACGAaaagcaggg
cggggggcggggggcgaaaTATGGAGAGTGTGAGGCGCATCAGGCTGCAT
TTTCGAAAGACTAATCGATATAAAGCAGAAGACTCTGCCCCTTTACGGTT
gcatccctttctttccagtCACACTGGCGTTTCGGTACCATTCACCGTGA
TTCGATATCAGTTTCACTCCATAGCATGCGCGTATCCTCCCGTCACATCA
GGCTGGCTACTGACTTCTCCTTCATGCTGAACGCACACCGGGTTGAATCG
CATGTTTCCAGGCGTGAGGGCAGGTAGTGGCATGAATTGTGGATGACATC
GCGTGGCACTGACTACTAGAGCGTACCACGCCCCCAAAAAACGGgggctc
ctccccttcttccagggcCAGACTCACTCATCAGTCCTACCACATGGCGC
GTGCTTTTGACGGGGCCGTGGAGAAATTTCTGTGAGAGCCCACAGATTGC
AGCCTAA

Coding sequence (CDS) from alignment at CM002462.1:1017411..1020167+

>rna4163 ID=rna4163|Name=rna4163|organism=Nannochloropsis gaditana|type=CDS|length=5736bp|location=Sequence derived from alignment at CM002462.1:1017411..1020167+ (Nannochloropsis gaditana)
atggcCCCAGACGATTTCTCTGTCAAAGTCCTGACGACCGGGTATTGGCC
GTCCTACACgcagTTGGATGTCCGGCTGCCCGACGAAATGCTTCGCTGCA
CCCAGGCCTTCAAAGCCTGGTACGACCTCAAGAATTCGCGGCGACGCCTC
GCATGGCAGCACTCCTTGGGATCTGCAACCCTCCGGGCGaaatatggcgc
gaaaacATACGATTTGCAAACAAACACACTGCAGGcggttctcctcctct
ccttccagtcggacgaggagagccTCGGTCTTTCCACCCTTAAAGAACGA
TTGAACGTCCCGACCGAGCAGAtgaagcccctcctccactccctctcctg
cggAAGATACAAGATCTTGAAGAAGCAGCCCGCCTCGGACAAGATCAAGG
AGACAGACACCTTCACGATCaacccttccttctcctgcccccagCGCGTG
ATCCGTATTCCGATGGCCACCATTGAGGAGAGCCACAACCCGAACAGAAT
CGAGGAGGATCGTTCGATCGCGATTGAGGCGGCGATTGTACGCATTATGA
AGGCGCGCAAGGTTCTGACACATCAACAGCTCACATCCGAAGTGCTCTCT
CAACTCGCTTTCTTTCGGCCAAATCCTAAAGTGGTTAAACAACGCATCCA
CGCTTTGATTGACAGGGAATACTTGGAACGAGACGAGAACCCTAACCAGT
ACAAGTATCTGGCCTAGatggcCCCAGACGATTTCTCTGTCAAAGTCCTG
ACGACCGGGTATTGGCCGTCCTACACgcagTTGGATGTCCGGCTGCCCGA
CGAAATGCTTCGCTGCACCCAGGCCTTCAAAGCCTGGTACGACCTCAAGA
ATTCGCGGCGACGCCTCGCATGGCAGCACTCCTTGGGATCTGCAACCCTC
CGGGCGaaatatggcgcgaaaacATACGATTTGCAAACAAACACACTGCA
GGcggttctcctcctctccttccagtcggacgaggagagccTCGGTCTTT
CCACCCTTAAAGAACGATTGAACGTCCCGACCGAGCAGAtgaagcccctc
ctccactccctctcctgcggAAGATACAAGATCTTGAAGAAGCAGCCCGC
CTCGGACAAGATCAAGGAGACAGACACCTTCACGATCaacccttccttct
cctgcccccagCGCGTGATCCGTATTCCGATGGCCACCATTGAGGAGAGC
CACAACCCGAACAGAATCGAGGAGGATCGTTCGATCGCGATTGAGGCGGC
GATTGTACGCATTATGAAGGCGCGCAAGGTTCTGACACATCAACAGCTCA
CATCCGAAGTGCTCTCTCAACTCGCTTTCTTTCGGCCAAATCCTAAAGTG
GTTAAACAACGCATCCACGCTTTGATTGACAGGGAATACTTGGAACGAGA
CGAGAACCCTAACCAGTACAAGTATCTGGCCTAGatggcCCCAGACGATT
TCTCTGTCAAAGTCCTGACGACCGGGTATTGGCCGTCCTACACgcagTTG
GATGTCCGGCTGCCCGACGAAATGCTTCGCTGCACCCAGGCCTTCAAAGC
CTGGTACGACCTCAAGAATTCGCGGCGACGCCTCGCATGGCAGCACTCCT
TGGGATCTGCAACCCTCCGGGCGaaatatggcgcgaaaacATACGATTTG
CAAACAAACACACTGCAGGcggttctcctcctctccttccagtcggacga
ggagagccTCGGTCTTTCCACCCTTAAAGAACGATTGAACGTCCCGACCG
AGCAGAtgaagcccctcctccactccctctcctgcggAAGATACAAGATC
TTGAAGAAGCAGCCCGCCTCGGACAAGATCAAGGAGACAGACACCTTCAC
GATCaacccttccttctcctgcccccagCGCGTGATCCGTATTCCGATGG
CCACCATTGAGGAGAGCCACAACCCGAACAGAATCGAGGAGGATCGTTCG
ATCGCGATTGAGGCGGCGATTGTACGCATTATGAAGGCGCGCAAGGTTCT
GACACATCAACAGCTCACATCCGAAGTGCTCTCTCAACTCGCTTTCTTTC
GGCCAAATCCTAAAGTGGTTAAACAACGCATCCACGCTTTGATTGACAGG
GAATACTTGGAACGAGACGAGAACCCTAACCAGTACAAGTATCTGGCCTA
GatggcCCCAGACGATTTCTCTGTCAAAGTCCTGACGACCGGGTATTGGC
CGTCCTACACgcagTTGGATGTCCGGCTGCCCGACGAAATGCTTCGCTGC
ACCCAGGCCTTCAAAGCCTGGTACGACCTCAAGAATTCGCGGCGACGCCT
CGCATGGCAGCACTCCTTGGGATCTGCAACCCTCCGGGCGaaatatggcg
cgaaaacATACGATTTGCAAACAAACACACTGCAGGcggttctcctcctc
tccttccagtcggacgaggagagccTCGGTCTTTCCACCCTTAAAGAACG
ATTGAACGTCCCGACCGAGCAGAtgaagcccctcctccactccctctcct
gcggAAGATACAAGATCTTGAAGAAGCAGCCCGCCTCGGACAAGATCAAG
GAGACAGACACCTTCACGATCaacccttccttctcctgcccccagCGCGT
GATCCGTATTCCGATGGCCACCATTGAGGAGAGCCACAACCCGAACAGAA
TCGAGGAGGATCGTTCGATCGCGATTGAGGCGGCGATTGTACGCATTATG
AAGGCGCGCAAGGTTCTGACACATCAACAGCTCACATCCGAAGTGCTCTC
TCAACTCGCTTTCTTTCGGCCAAATCCTAAAGTGGTTAAACAACGCATCC
ACGCTTTGATTGACAGGGAATACTTGGAACGAGACGAGAACCCTAACCAG
TACAAGTATCTGGCCTAGatggcCCCAGACGATTTCTCTGTCAAAGTCCT
GACGACCGGGTATTGGCCGTCCTACACgcagTTGGATGTCCGGCTGCCCG
ACGAAATGCTTCGCTGCACCCAGGCCTTCAAAGCCTGGTACGACCTCAAG
AATTCGCGGCGACGCCTCGCATGGCAGCACTCCTTGGGATCTGCAACCCT
CCGGGCGaaatatggcgcgaaaacATACGATTTGCAAACAAACACACTGC
AGGcggttctcctcctctccttccagtcggacgaggagagccTCGGTCTT
TCCACCCTTAAAGAACGATTGAACGTCCCGACCGAGCAGAtgaagcccct
cctccactccctctcctgcggAAGATACAAGATCTTGAAGAAGCAGCCCG
CCTCGGACAAGATCAAGGAGACAGACACCTTCACGATCaacccttccttc
tcctgcccccagCGCGTGATCCGTATTCCGATGGCCACCATTGAGGAGAG
CCACAACCCGAACAGAATCGAGGAGGATCGTTCGATCGCGATTGAGGCGG
CGATTGTACGCATTATGAAGGCGCGCAAGGTTCTGACACATCAACAGCTC
ACATCCGAAGTGCTCTCTCAACTCGCTTTCTTTCGGCCAAATCCTAAAGT
GGTTAAACAACGCATCCACGCTTTGATTGACAGGGAATACTTGGAACGAG
ACGAGAACCCTAACCAGTACAAGTATCTGGCCTAGatggcCCCAGACGAT
TTCTCTGTCAAAGTCCTGACGACCGGGTATTGGCCGTCCTACACgcagTT
GGATGTCCGGCTGCCCGACGAAATGCTTCGCTGCACCCAGGCCTTCAAAG
CCTGGTACGACCTCAAGAATTCGCGGCGACGCCTCGCATGGCAGCACTCC
TTGGGATCTGCAACCCTCCGGGCGaaatatggcgcgaaaacATACGATTT
GCAAACAAACACACTGCAGGcggttctcctcctctccttccagtcggacg
aggagagccTCGGTCTTTCCACCCTTAAAGAACGATTGAACGTCCCGACC
GAGCAGAtgaagcccctcctccactccctctcctgcggAAGATACAAGAT
CTTGAAGAAGCAGCCCGCCTCGGACAAGATCAAGGAGACAGACACCTTCA
CGATCaacccttccttctcctgcccccagCGCGTGATCCGTATTCCGATG
GCCACCATTGAGGAGAGCCACAACCCGAACAGAATCGAGGAGGATCGTTC
GATCGCGATTGAGGCGGCGATTGTACGCATTATGAAGGCGCGCAAGGTTC
TGACACATCAACAGCTCACATCCGAAGTGCTCTCTCAACTCGCTTTCTTT
CGGCCAAATCCTAAAGTGGTTAAACAACGCATCCACGCTTTGATTGACAG
GGAATACTTGGAACGAGACGAGAACCCTAACCAGTACAAGTATCTGGCCT
AGatggcCCCAGACGATTTCTCTGTCAAAGTCCTGACGACCGGGTATTGG
CCGTCCTACACgcagTTGGATGTCCGGCTGCCCGACGAAATGCTTCGCTG
CACCCAGGCCTTCAAAGCCTGGTACGACCTCAAGAATTCGCGGCGACGCC
TCGCATGGCAGCACTCCTTGGGATCTGCAACCCTCCGGGCGaaatatggc
gcgaaaacATACGATTTGCAAACAAACACACTGCAGGcggttctcctcct
ctccttccagtcggacgaggagagccTCGGTCTTTCCACCCTTAAAGAAC
GATTGAACGTCCCGACCGAGCAGAtgaagcccctcctccactccctctcc
tgcggAAGATACAAGATCTTGAAGAAGCAGCCCGCCTCGGACAAGATCAA
GGAGACAGACACCTTCACGATCaacccttccttctcctgcccccagCGCG
TGATCCGTATTCCGATGGCCACCATTGAGGAGAGCCACAACCCGAACAGA
ATCGAGGAGGATCGTTCGATCGCGATTGAGGCGGCGATTGTACGCATTAT
GAAGGCGCGCAAGGTTCTGACACATCAACAGCTCACATCCGAAGTGCTCT
CTCAACTCGCTTTCTTTCGGCCAAATCCTAAAGTGGTTAAACAACGCATC
CACGCTTTGATTGACAGGGAATACTTGGAACGAGACGAGAACCCTAACCA
GTACAAGTATCTGGCCTAGatggcCCCAGACGATTTCTCTGTCAAAGTCC
TGACGACCGGGTATTGGCCGTCCTACACgcagTTGGATGTCCGGCTGCCC
GACGAAATGCTTCGCTGCACCCAGGCCTTCAAAGCCTGGTACGACCTCAA
GAATTCGCGGCGACGCCTCGCATGGCAGCACTCCTTGGGATCTGCAACCC
TCCGGGCGaaatatggcgcgaaaacATACGATTTGCAAACAAACACACTG
CAGGcggttctcctcctctccttccagtcggacgaggagagccTCGGTCT
TTCCACCCTTAAAGAACGATTGAACGTCCCGACCGAGCAGAtgaagcccc
tcctccactccctctcctgcggAAGATACAAGATCTTGAAGAAGCAGCCC
GCCTCGGACAAGATCAAGGAGACAGACACCTTCACGATCaacccttcctt
ctcctgcccccagCGCGTGATCCGTATTCCGATGGCCACCATTGAGGAGA
GCCACAACCCGAACAGAATCGAGGAGGATCGTTCGATCGCGATTGAGGCG
GCGATTGTACGCATTATGAAGGCGCGCAAGGTTCTGACACATCAACAGCT
CACATCCGAAGTGCTCTCTCAACTCGCTTTCTTTCGGCCAAATCCTAAAG
TGGTTAAACAACGCATCCACGCTTTGATTGACAGGGAATACTTGGAACGA
GACGAGAACCCTAACCAGTACAAGTATCTGGCCTAG

Synonyms

Publications