EWM26520.1, cds4153 (CDS) Nannochloropsis gaditana

Overview
NameEWM26520.1
Unique Namecds4153
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1017483..1017545 +
Alignment locationCM002462.1:1017665..1017706 +
Alignment locationCM002462.1:1017824..1017952 +
Alignment locationCM002462.1:1018106..1018234 +
Alignment locationCM002462.1:1018419..1018559 +
Alignment locationCM002462.1:1018806..1018862 +
Alignment locationCM002462.1:1019199..1019302 +
Alignment locationCM002462.1:1019523..1019574 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26520.1
Productcullin family
Orig transcript idgnl|cribi|Naga_100398g1.1309.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1017483..1017545 +
CM002462.1supercontigCM002462.1:1017665..1017706 +
CM002462.1supercontigCM002462.1:1017824..1017952 +
CM002462.1supercontigCM002462.1:1018106..1018234 +
CM002462.1supercontigCM002462.1:1018419..1018559 +
CM002462.1supercontigCM002462.1:1018806..1018862 +
CM002462.1supercontigCM002462.1:1019199..1019302 +
CM002462.1supercontigCM002462.1:1019523..1019574 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0031461cullin-RING ubiquitin ligase complex
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0031625ubiquitin protein ligase binding
Vocabulary: INTERPRO
TermDefinition
IPR016158Cullin_homology
IPR016157Cullin_CS
IPR001373Cullin_N
IPR011991WHTH_DNA-bd_dom
IPR019559Cullin_neddylation_domain
Homology
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|585108595|gb|EWM26520.1| (cullin family [Nannochloropsis gaditana])

HSP 1 Score: 495.738 bits (1275), Expect = 1.521e-177
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
Query:    1 MAPDDFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERDENPNQYKYLA 238
            MAPDDFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERDENPNQYKYLA
Sbjct:    1 MAPDDFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERDENPNQYKYLA 238          
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|676378097|ref|XP_009032327.1| (hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens] >gi|323456805|gb|EGB12671.1| hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens])

HSP 1 Score: 317.775 bits (813), Expect = 9.043e-101
Identity = 142/239 (59.41%), Postives = 187/239 (78.24%), Query Frame = 0
Query:    5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEE----SLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERDEN-PNQYKYLA 238
            DF+V+VLTTGYWPS+  +D  LP E+++CT+ FK +YD KNS+RRL W  SLG+A+++  +G K+YD Q +TLQA+ LL+F +D +    SL    ++ER+N+P E +K +LHSL+CG+YK++ K PA + IK TD F +N  F C  R IR+PMA ++ESHNP R+EEDR++AIEAAIVRIMKARK L+HQQL +EVLSQLAFFRPNPKV+K+RI ALIDREYLERD +  N Y+YLA
Sbjct:  508 DFAVQVLTTGYWPSFAAIDAHLPPEIVQCTRVFKDYYDTKNSKRRLTWMFSLGNASVKGAFGKKSYDFQVSTLQAIALLAFNADGDGAAPSLAYDAVRERINLPDEHLKRVLHSLACGKYKVITKTPAGNTIKNTDAFKVNADFKCQMRKIRVPMANLDESHNPKRVEEDRTVAIEAAIVRIMKARKTLSHQQLLAEVLSQLAFFRPNPKVIKRRIEALIDREYLERDPDVANSYRYLA 746          
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|223993941|ref|XP_002286654.1| (cullin [Thalassiosira pseudonana CCMP1335] >gi|220977969|gb|EED96295.1| cullin [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 311.227 bits (796), Expect = 8.101e-99
Identity = 147/234 (62.82%), Postives = 184/234 (78.63%), Query Frame = 0
Query:    6 FSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLER-DENPNQYKYLA 238
            F V+VLTTG+WPSY   +V LP +M  C + FK W+D K+ +R+L W HSLG+AT+RA +G K+YDLQ  TLQAV+L +F ++ ++LGL  LK+ LN+  + +KPL+HSLSCG++K+L K PAS+KI  TDTFT N  F+C  R IRIPMA+IE SHN NR+EEDRSIAIEAAIVRIMKARK L HQQL +EVLSQLAFF+P P+V+K+RI ALIDREYLER  E+  QY YLA
Sbjct:  453 FGVQVLTTGFWPSYKAPEVALPTQMTECMEVFKEWHDNKHQKRKLTWVHSLGNATVRATFGKKSYDLQVTTLQAVVLNAF-NEGKTLGLEDLKKTLNLDDQTLKPLMHSLSCGKHKVLLKSPASNKINSTDTFTSNAKFTCNMRKIRIPMASIEASHNKNRVEEDRSIAIEAAIVRIMKARKTLKHQQLIAEVLSQLAFFKPQPRVIKKRIEALIDREYLERSSEDQQQYNYLA 685          
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|224013748|ref|XP_002296538.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220968890|gb|EED87234.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 290.041 bits (741), Expect = 6.474e-95
Identity = 134/215 (62.33%), Postives = 170/215 (79.07%), Query Frame = 0
Query:    6 FSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALI 220
            F V+VLTTG+WPSY   +V LP +M  C + FK W+D K+ +R+L W HSLG+AT+RA +G K+YDLQ  TLQAV+L +F ++ ++LGL  LK+ LN+  + +KPL+HSLSCG++K+L K PAS+KI  TDTFT N  F+C  R IRIPMA+IE SHN NR+EEDRSIAIEAAIVRIMKARK L HQQL +EVLSQLAFF+P P+V+K+RI ALI
Sbjct:  113 FGVQVLTTGFWPSYKAPEVALPTQMTECMEVFKEWHDNKHQKRKLTWVHSLGNATVRATFGKKSYDLQVTTLQAVVLNAF-NEGKTLGLEDLKKTLNLDDQTLKPLMHSLSCGKHKVLLKSPASNKINSTDTFTSNAKFTCNMRKIRIPMASIEASHNKNRVEEDRSIAIEAAIVRIMKARKTLKHQQLIAEVLSQLAFFKPQPRVIKKRIEALI 326          
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|695381710|ref|XP_009517174.1| (hypothetical protein PHYSODRAFT_538079 [Phytophthora sojae] >gi|348690085|gb|EGZ29899.1| hypothetical protein PHYSODRAFT_538079 [Phytophthora sojae])

HSP 1 Score: 293.123 bits (749), Expect = 2.643e-93
Identity = 144/236 (61.02%), Postives = 176/236 (74.58%), Query Frame = 0
Query:    5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKT-YDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238
            +FSV+VLTTGYWPSY  L+V +P  M+RC   FK +YD K S RRL W HSLG+AT+RA +  K  YDLQ  TLQAV LL F   E SL    ++E LN+  + +K ++HSLSCG+YK+L K PA   I  +D FT+N +F+ P R +RIPMA++EESH+   +EEDRSIAIEAAIVRIMKARK L HQQL SEVLSQLAFF+PN KV+K+RI ALIDREYLERD +  N Y+YLA
Sbjct:  318 EFSVQVLTTGYWPSYRILEVTMPPLMVRCMNLFKVYYDSKTSHRRLQWVHSLGNATIRANFPKKKWYDLQVTTLQAVALLLFNEGEGSLSFEAVRESLNLTVDVVKRIMHSLSCGKYKLLTKTPAGKTISTSDGFTVNRTFASPMRKLRIPMASLEESHSQKNVEEDRSIAIEAAIVRIMKARKTLQHQQLISEVLSQLAFFKPNLKVIKRRIEALIDREYLERDPDQANTYRYLA 553          
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|397563350|gb|EJK43762.1| (hypothetical protein THAOC_37760, partial [Thalassiosira oceanica])

HSP 1 Score: 296.975 bits (759), Expect = 1.209e-92
Identity = 137/234 (58.55%), Postives = 182/234 (77.78%), Query Frame = 0
Query:    6 FSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238
            F V+VL+ G WPSY    V+LP +M +C + F+ W+D K+ +RRL W HSLG+A+++A YG KTYDLQ  TLQAV+L +F +D +S G + LK++LNV  + +KP++HSLSCG++K+++K P S+KI+ TD F+ NP FS   R IRIP+AT+E+SHN NR+EEDR +AIEA IVRIMKARK L HQQL +EVLSQLAFF+P P+V+K++I ALIDREYLER  +N  QY YLA
Sbjct:  520 FGVQVLSNGNWPSYQAPVVQLPPQMSKCMEVFQEWHDKKHQKRRLTWVHSLGNASVKATYGKKTYDLQVTTLQAVVLNAF-NDNKSYGFNELKQKLNVDDKTLKPIMHSLSCGKHKVIEKSPKSNKIQSTDKFSPNPKFSSNMRKIRIPVATLEQSHNKNRVEEDRGVAIEACIVRIMKARKTLAHQQLIAEVLSQLAFFKPQPRVIKKKIEALIDREYLERSQDNSQQYNYLA 752          
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|301119791|ref|XP_002907623.1| (Cullin family protein, putative [Phytophthora infestans T30-4] >gi|262106135|gb|EEY64187.1| Cullin family protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 291.582 bits (745), Expect = 1.422e-92
Identity = 143/236 (60.59%), Postives = 174/236 (73.73%), Query Frame = 0
Query:    5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKT-YDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238
            +FSV+VLTTGYWPSY  L+V +P  M+RC   FK +YD K S RRL W HSLG+AT+RA +  K  YDLQ  TLQAV LL F   E +L    + E LNV  + +K ++HSLSCG+YK+L K PA   I  +D F +N +F+ P R +RIPMA++EESH+   +EEDRSIAIEAAIVRIMKARK L HQQL SEVLSQLAFF+PN KV+K+RI ALIDREYLERD +  N Y+YLA
Sbjct:  318 EFSVQVLTTGYWPSYRILEVTMPPLMVRCMNLFKVYYDSKTSHRRLQWVHSLGNATIRANFPKKKWYDLQVTTLQAVALLLFNEGEGALSFEAVHESLNVTVDVVKRIMHSLSCGKYKLLAKTPAGKTISTSDQFAVNKTFASPMRKLRIPMASLEESHSQKNVEEDRSIAIEAAIVRIMKARKTLQHQQLISEVLSQLAFFKPNLKVIKRRIEALIDREYLERDPDQANTYRYLA 553          
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|813109733|ref|XP_012194667.1| (hypothetical protein SPRG_01077 [Saprolegnia parasitica CBS 223.65] >gi|641541251|gb|KDO35014.1| hypothetical protein SPRG_01077 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 293.508 bits (750), Expect = 1.923e-91
Identity = 147/237 (62.03%), Postives = 179/237 (75.53%), Query Frame = 0
Query:    5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKY-GAKTYDLQTNTLQAVLLLSFQ-SDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238
            +F V+VLTTG+WPSYT LD+ LP +M+R    FK +YD K S RRL W HSLG+AT+RA +   K YDLQ  TLQAV LL F  SD ++     L+E LN+  + +K +LHSLSCG+YK+L K P S  I  TDTFT+N SF+ P R +R+PMA++EESHNP  +EEDRSIAIEAAIVRIMKARK L HQQL SEVLSQLAFF+P PK++K+RI ALIDREYLERD E+   Y+YLA
Sbjct:  508 EFGVQVLTTGHWPSYTPLDISLPPQMVRYMSLFKMYYDSKTSHRRLQWVHSLGNATVRATFPKNKWYDLQVTTLQAVALLLFNASDTDAFTFEHLRESLNLSEDVVKRILHSLSCGKYKLLTKTPMSKNIAVTDTFTLNLSFASPMRKVRVPMASLEESHNPKHVEEDRSIAIEAAIVRIMKARKTLQHQQLVSEVLSQLAFFKPVPKLIKRRIEALIDREYLERDPESATTYRYLA 744          
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|669138794|ref|XP_008604965.1| (hypothetical protein SDRG_01226 [Saprolegnia diclina VS20] >gi|530743009|gb|EQC41251.1| hypothetical protein SDRG_01226 [Saprolegnia diclina VS20])

HSP 1 Score: 292.352 bits (747), Expect = 5.010e-91
Identity = 147/237 (62.03%), Postives = 178/237 (75.11%), Query Frame = 0
Query:    5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKY-GAKTYDLQTNTLQAVLLLSFQ-SDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238
            +F V+VLTTG+WPSYT LD+ LP +M+R    FK +YD K S RRL W HSLG+AT+RA +   K YDLQ  TLQAV LL F  SD E+     L+E LN+  + +K +LHSLSCG+YK+L K P S  I  TDTF +N SF+ P R +R+PMA++EESHNP  +EEDRSIAIEAAIVRIMKARK L HQQL SEVLSQLAFF+P PK++K+RI ALIDREYLERD E+   Y+YLA
Sbjct:  508 EFGVQVLTTGHWPSYTPLDISLPPQMVRYMSLFKMYYDSKTSHRRLQWVHSLGNATVRATFPKNKWYDLQVTTLQAVALLLFNASDTEAFTFEHLRESLNLSEDVVKRILHSLSCGKYKLLTKTPMSKNIAITDTFALNLSFASPMRKVRVPMASLEESHNPKHVEEDRSIAIEAAIVRIMKARKTLQHQQLVSEVLSQLAFFKPVPKLIKRRIEALIDREYLERDPESATTYRYLA 744          
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|673027716|ref|XP_008867819.1| (hypothetical protein H310_05001 [Aphanomyces invadans] >gi|574476592|gb|ETW03590.1| hypothetical protein H310_05001 [Aphanomyces invadans])

HSP 1 Score: 292.352 bits (747), Expect = 5.402e-91
Identity = 146/236 (61.86%), Postives = 176/236 (74.58%), Query Frame = 0
Query:    5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKT-YDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238
            +F V+VLTTG+WPSY  L V LP  M++C   FK +YD   S RRL W HSLG+AT+RA Y  K  YDLQ  TLQAV L+ F +D ESL    L+E LNV  + +K +LHSLSCG++K++KK P +  I  TDTF  N SF+ P R +RIPMA++EESHNP  +EEDRSIAIEAAIVRIMKARK L HQQL SEVLSQL+FF PNPK++K+RI ALIDREYLERD E+   Y+YLA
Sbjct:  504 EFGVQVLTTGHWPSYQPLQVHLPPPMVKCMSLFKTYYDSMTSHRRLQWIHSLGNATVRATYANKKWYDLQVTTLQAVALVLFNTD-ESLTFDQLQESLNVSPDILKRILHSLSCGKFKVVKKTPENKNIATTDTFQANASFASPVRKLRIPMASLEESHNPKHVEEDRSIAIEAAIVRIMKARKTLNHQQLISEVLSQLSFFTPNPKLIKRRIEALIDREYLERDPESTTTYRYLA 738          
The following BLAST results are available for this feature:
BLAST of EWM26520.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108595|gb|EWM26520.1|1.521e-177100.00cullin family [Nannochloropsis gaditana][more]
gi|676378097|ref|XP_009032327.1|9.043e-10159.41hypothetical protein AURANDRAFT_52007 [Aureococcus... [more]
gi|223993941|ref|XP_002286654.1|8.101e-9962.82cullin [Thalassiosira pseudonana CCMP1335] >gi|220... [more]
gi|224013748|ref|XP_002296538.1|6.474e-9562.33predicted protein, partial [Thalassiosira pseudona... [more]
gi|695381710|ref|XP_009517174.1|2.643e-9361.02hypothetical protein PHYSODRAFT_538079 [Phytophtho... [more]
gi|397563350|gb|EJK43762.1|1.209e-9258.55hypothetical protein THAOC_37760, partial [Thalass... [more]
gi|301119791|ref|XP_002907623.1|1.422e-9260.59Cullin family protein, putative [Phytophthora infe... [more]
gi|813109733|ref|XP_012194667.1|1.923e-9162.03hypothetical protein SPRG_01077 [Saprolegnia paras... [more]
gi|669138794|ref|XP_008604965.1|5.010e-9162.03hypothetical protein SDRG_01226 [Saprolegnia dicli... [more]
gi|673027716|ref|XP_008867819.1|5.402e-9161.86hypothetical protein H310_05001 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4163rna4163Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications