EWM26520.1, cds4153 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|585108595|gb|EWM26520.1| (cullin family [Nannochloropsis gaditana]) HSP 1 Score: 495.738 bits (1275), Expect = 1.521e-177 Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0 Query: 1 MAPDDFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERDENPNQYKYLA 238 MAPDDFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERDENPNQYKYLA Sbjct: 1 MAPDDFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERDENPNQYKYLA 238
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|676378097|ref|XP_009032327.1| (hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens] >gi|323456805|gb|EGB12671.1| hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens]) HSP 1 Score: 317.775 bits (813), Expect = 9.043e-101 Identity = 142/239 (59.41%), Postives = 187/239 (78.24%), Query Frame = 0 Query: 5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEE----SLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERDEN-PNQYKYLA 238 DF+V+VLTTGYWPS+ +D LP E+++CT+ FK +YD KNS+RRL W SLG+A+++ +G K+YD Q +TLQA+ LL+F +D + SL ++ER+N+P E +K +LHSL+CG+YK++ K PA + IK TD F +N F C R IR+PMA ++ESHNP R+EEDR++AIEAAIVRIMKARK L+HQQL +EVLSQLAFFRPNPKV+K+RI ALIDREYLERD + N Y+YLA Sbjct: 508 DFAVQVLTTGYWPSFAAIDAHLPPEIVQCTRVFKDYYDTKNSKRRLTWMFSLGNASVKGAFGKKSYDFQVSTLQAIALLAFNADGDGAAPSLAYDAVRERINLPDEHLKRVLHSLACGKYKVITKTPAGNTIKNTDAFKVNADFKCQMRKIRVPMANLDESHNPKRVEEDRTVAIEAAIVRIMKARKTLSHQQLLAEVLSQLAFFRPNPKVIKRRIEALIDREYLERDPDVANSYRYLA 746
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|223993941|ref|XP_002286654.1| (cullin [Thalassiosira pseudonana CCMP1335] >gi|220977969|gb|EED96295.1| cullin [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 311.227 bits (796), Expect = 8.101e-99 Identity = 147/234 (62.82%), Postives = 184/234 (78.63%), Query Frame = 0 Query: 6 FSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLER-DENPNQYKYLA 238 F V+VLTTG+WPSY +V LP +M C + FK W+D K+ +R+L W HSLG+AT+RA +G K+YDLQ TLQAV+L +F ++ ++LGL LK+ LN+ + +KPL+HSLSCG++K+L K PAS+KI TDTFT N F+C R IRIPMA+IE SHN NR+EEDRSIAIEAAIVRIMKARK L HQQL +EVLSQLAFF+P P+V+K+RI ALIDREYLER E+ QY YLA Sbjct: 453 FGVQVLTTGFWPSYKAPEVALPTQMTECMEVFKEWHDNKHQKRKLTWVHSLGNATVRATFGKKSYDLQVTTLQAVVLNAF-NEGKTLGLEDLKKTLNLDDQTLKPLMHSLSCGKHKVLLKSPASNKINSTDTFTSNAKFTCNMRKIRIPMASIEASHNKNRVEEDRSIAIEAAIVRIMKARKTLKHQQLIAEVLSQLAFFKPQPRVIKKRIEALIDREYLERSSEDQQQYNYLA 685
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|224013748|ref|XP_002296538.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220968890|gb|EED87234.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 290.041 bits (741), Expect = 6.474e-95 Identity = 134/215 (62.33%), Postives = 170/215 (79.07%), Query Frame = 0 Query: 6 FSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALI 220 F V+VLTTG+WPSY +V LP +M C + FK W+D K+ +R+L W HSLG+AT+RA +G K+YDLQ TLQAV+L +F ++ ++LGL LK+ LN+ + +KPL+HSLSCG++K+L K PAS+KI TDTFT N F+C R IRIPMA+IE SHN NR+EEDRSIAIEAAIVRIMKARK L HQQL +EVLSQLAFF+P P+V+K+RI ALI Sbjct: 113 FGVQVLTTGFWPSYKAPEVALPTQMTECMEVFKEWHDNKHQKRKLTWVHSLGNATVRATFGKKSYDLQVTTLQAVVLNAF-NEGKTLGLEDLKKTLNLDDQTLKPLMHSLSCGKHKVLLKSPASNKINSTDTFTSNAKFTCNMRKIRIPMASIEASHNKNRVEEDRSIAIEAAIVRIMKARKTLKHQQLIAEVLSQLAFFKPQPRVIKKRIEALI 326
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|695381710|ref|XP_009517174.1| (hypothetical protein PHYSODRAFT_538079 [Phytophthora sojae] >gi|348690085|gb|EGZ29899.1| hypothetical protein PHYSODRAFT_538079 [Phytophthora sojae]) HSP 1 Score: 293.123 bits (749), Expect = 2.643e-93 Identity = 144/236 (61.02%), Postives = 176/236 (74.58%), Query Frame = 0 Query: 5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKT-YDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238 +FSV+VLTTGYWPSY L+V +P M+RC FK +YD K S RRL W HSLG+AT+RA + K YDLQ TLQAV LL F E SL ++E LN+ + +K ++HSLSCG+YK+L K PA I +D FT+N +F+ P R +RIPMA++EESH+ +EEDRSIAIEAAIVRIMKARK L HQQL SEVLSQLAFF+PN KV+K+RI ALIDREYLERD + N Y+YLA Sbjct: 318 EFSVQVLTTGYWPSYRILEVTMPPLMVRCMNLFKVYYDSKTSHRRLQWVHSLGNATIRANFPKKKWYDLQVTTLQAVALLLFNEGEGSLSFEAVRESLNLTVDVVKRIMHSLSCGKYKLLTKTPAGKTISTSDGFTVNRTFASPMRKLRIPMASLEESHSQKNVEEDRSIAIEAAIVRIMKARKTLQHQQLISEVLSQLAFFKPNLKVIKRRIEALIDREYLERDPDQANTYRYLA 553
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|397563350|gb|EJK43762.1| (hypothetical protein THAOC_37760, partial [Thalassiosira oceanica]) HSP 1 Score: 296.975 bits (759), Expect = 1.209e-92 Identity = 137/234 (58.55%), Postives = 182/234 (77.78%), Query Frame = 0 Query: 6 FSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKTYDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238 F V+VL+ G WPSY V+LP +M +C + F+ W+D K+ +RRL W HSLG+A+++A YG KTYDLQ TLQAV+L +F +D +S G + LK++LNV + +KP++HSLSCG++K+++K P S+KI+ TD F+ NP FS R IRIP+AT+E+SHN NR+EEDR +AIEA IVRIMKARK L HQQL +EVLSQLAFF+P P+V+K++I ALIDREYLER +N QY YLA Sbjct: 520 FGVQVLSNGNWPSYQAPVVQLPPQMSKCMEVFQEWHDKKHQKRRLTWVHSLGNASVKATYGKKTYDLQVTTLQAVVLNAF-NDNKSYGFNELKQKLNVDDKTLKPIMHSLSCGKHKVIEKSPKSNKIQSTDKFSPNPKFSSNMRKIRIPVATLEQSHNKNRVEEDRGVAIEACIVRIMKARKTLAHQQLIAEVLSQLAFFKPQPRVIKKKIEALIDREYLERSQDNSQQYNYLA 752
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|301119791|ref|XP_002907623.1| (Cullin family protein, putative [Phytophthora infestans T30-4] >gi|262106135|gb|EEY64187.1| Cullin family protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 291.582 bits (745), Expect = 1.422e-92 Identity = 143/236 (60.59%), Postives = 174/236 (73.73%), Query Frame = 0 Query: 5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKT-YDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238 +FSV+VLTTGYWPSY L+V +P M+RC FK +YD K S RRL W HSLG+AT+RA + K YDLQ TLQAV LL F E +L + E LNV + +K ++HSLSCG+YK+L K PA I +D F +N +F+ P R +RIPMA++EESH+ +EEDRSIAIEAAIVRIMKARK L HQQL SEVLSQLAFF+PN KV+K+RI ALIDREYLERD + N Y+YLA Sbjct: 318 EFSVQVLTTGYWPSYRILEVTMPPLMVRCMNLFKVYYDSKTSHRRLQWVHSLGNATIRANFPKKKWYDLQVTTLQAVALLLFNEGEGALSFEAVHESLNVTVDVVKRIMHSLSCGKYKLLAKTPAGKTISTSDQFAVNKTFASPMRKLRIPMASLEESHSQKNVEEDRSIAIEAAIVRIMKARKTLQHQQLISEVLSQLAFFKPNLKVIKRRIEALIDREYLERDPDQANTYRYLA 553
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|813109733|ref|XP_012194667.1| (hypothetical protein SPRG_01077 [Saprolegnia parasitica CBS 223.65] >gi|641541251|gb|KDO35014.1| hypothetical protein SPRG_01077 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 293.508 bits (750), Expect = 1.923e-91 Identity = 147/237 (62.03%), Postives = 179/237 (75.53%), Query Frame = 0 Query: 5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKY-GAKTYDLQTNTLQAVLLLSFQ-SDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238 +F V+VLTTG+WPSYT LD+ LP +M+R FK +YD K S RRL W HSLG+AT+RA + K YDLQ TLQAV LL F SD ++ L+E LN+ + +K +LHSLSCG+YK+L K P S I TDTFT+N SF+ P R +R+PMA++EESHNP +EEDRSIAIEAAIVRIMKARK L HQQL SEVLSQLAFF+P PK++K+RI ALIDREYLERD E+ Y+YLA Sbjct: 508 EFGVQVLTTGHWPSYTPLDISLPPQMVRYMSLFKMYYDSKTSHRRLQWVHSLGNATVRATFPKNKWYDLQVTTLQAVALLLFNASDTDAFTFEHLRESLNLSEDVVKRILHSLSCGKYKLLTKTPMSKNIAVTDTFTLNLSFASPMRKVRVPMASLEESHNPKHVEEDRSIAIEAAIVRIMKARKTLQHQQLVSEVLSQLAFFKPVPKLIKRRIEALIDREYLERDPESATTYRYLA 744
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|669138794|ref|XP_008604965.1| (hypothetical protein SDRG_01226 [Saprolegnia diclina VS20] >gi|530743009|gb|EQC41251.1| hypothetical protein SDRG_01226 [Saprolegnia diclina VS20]) HSP 1 Score: 292.352 bits (747), Expect = 5.010e-91 Identity = 147/237 (62.03%), Postives = 178/237 (75.11%), Query Frame = 0 Query: 5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKY-GAKTYDLQTNTLQAVLLLSFQ-SDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238 +F V+VLTTG+WPSYT LD+ LP +M+R FK +YD K S RRL W HSLG+AT+RA + K YDLQ TLQAV LL F SD E+ L+E LN+ + +K +LHSLSCG+YK+L K P S I TDTF +N SF+ P R +R+PMA++EESHNP +EEDRSIAIEAAIVRIMKARK L HQQL SEVLSQLAFF+P PK++K+RI ALIDREYLERD E+ Y+YLA Sbjct: 508 EFGVQVLTTGHWPSYTPLDISLPPQMVRYMSLFKMYYDSKTSHRRLQWVHSLGNATVRATFPKNKWYDLQVTTLQAVALLLFNASDTEAFTFEHLRESLNLSEDVVKRILHSLSCGKYKLLTKTPMSKNIAITDTFALNLSFASPMRKVRVPMASLEESHNPKHVEEDRSIAIEAAIVRIMKARKTLQHQQLVSEVLSQLAFFKPVPKLIKRRIEALIDREYLERDPESATTYRYLA 744
BLAST of EWM26520.1 vs. NCBI_GenBank
Match: gi|673027716|ref|XP_008867819.1| (hypothetical protein H310_05001 [Aphanomyces invadans] >gi|574476592|gb|ETW03590.1| hypothetical protein H310_05001 [Aphanomyces invadans]) HSP 1 Score: 292.352 bits (747), Expect = 5.402e-91 Identity = 146/236 (61.86%), Postives = 176/236 (74.58%), Query Frame = 0 Query: 5 DFSVKVLTTGYWPSYTQLDVRLPDEMLRCTQAFKAWYDLKNSRRRLAWQHSLGSATLRAKYGAKT-YDLQTNTLQAVLLLSFQSDEESLGLSTLKERLNVPTEQMKPLLHSLSCGRYKILKKQPASDKIKETDTFTINPSFSCPQRVIRIPMATIEESHNPNRIEEDRSIAIEAAIVRIMKARKVLTHQQLTSEVLSQLAFFRPNPKVVKQRIHALIDREYLERD-ENPNQYKYLA 238 +F V+VLTTG+WPSY L V LP M++C FK +YD S RRL W HSLG+AT+RA Y K YDLQ TLQAV L+ F +D ESL L+E LNV + +K +LHSLSCG++K++KK P + I TDTF N SF+ P R +RIPMA++EESHNP +EEDRSIAIEAAIVRIMKARK L HQQL SEVLSQL+FF PNPK++K+RI ALIDREYLERD E+ Y+YLA Sbjct: 504 EFGVQVLTTGHWPSYQPLQVHLPPPMVKCMSLFKTYYDSMTSHRRLQWIHSLGNATVRATYANKKWYDLQVTTLQAVALVLFNTD-ESLTFDQLQESLNVSPDILKRILHSLSCGKFKVVKKTPENKNIATTDTFQANASFASPVRKLRIPMASLEESHNPKHVEEDRSIAIEAAIVRIMKARKTLNHQQLISEVLSQLSFFTPNPKLIKRRIEALIDREYLERDPESTTTYRYLA 738 The following BLAST results are available for this feature:
BLAST of EWM26520.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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