EWM26521.1, cds4152 (CDS) Nannochloropsis gaditana

Overview
NameEWM26521.1
Unique Namecds4152
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1016618..1016626 +
Alignment locationCM002462.1:1016674..1016762 +
Alignment locationCM002462.1:1016913..1016988 +
Alignment locationCM002462.1:1017149..1017187 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26521.1
Productcullin protein 1
Orig transcript idgnl|cribi|Naga_102804g1.6258.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1016618..1016626 +
CM002462.1supercontigCM002462.1:1016674..1016762 +
CM002462.1supercontigCM002462.1:1016913..1016988 +
CM002462.1supercontigCM002462.1:1017149..1017187 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
GO:0005515protein binding
GO:0031625ubiquitin protein ligase binding
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: INTERPRO
TermDefinition
IPR016158Cullin_homology
IPR001373Cullin_N
Homology
[Close]
BLAST of EWM26521.1 vs. NCBI_GenBank
Match: gi|585108597|gb|EWM26521.1| (cullin protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 146.362 bits (368), Expect = 1.256e-44
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 
Query:    1 MHDVVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVLTRTKRRA 70
            MHDVVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVLTRTKRRA
Sbjct:    1 MHDVVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVLTRTKRRA 70
[Close]
BLAST of EWM26521.1 vs. NCBI_GenBank
Match: gi|676378097|ref|XP_009032327.1| (hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens] >gi|323456805|gb|EGB12671.1| hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens])

HSP 1 Score: 103.99 bits (258), Expect = 2.033e-24
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 0 
Query:    1 MHDVVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVL 63
            +   V LF+YLTDKDLFAEIYRNQLAKRLLN RS+SDD E+LMIGKLK RCG+QFTGK EG+L
Sbjct:  417 LEKTVQLFSYLTDKDLFAEIYRNQLAKRLLNQRSASDDAERLMIGKLKLRCGSQFTGKMEGML 479
[Close]
BLAST of EWM26521.1 vs. NCBI_GenBank
Match: gi|698810158|ref|XP_009838108.1| (hypothetical protein H257_12555 [Aphanomyces astaci] >gi|574106911|gb|ETV72426.1| hypothetical protein H257_12555 [Aphanomyces astaci])

HSP 1 Score: 102.064 bits (253), Expect = 1.171e-23
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 0 
Query:    1 MHDVVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVL 63
            +  VV++F+YLTDKDLFAEIYRNQLAKRLLN RSSSDD E  MI KLK RCGAQFTGK EG+L
Sbjct:  417 LEKVVHVFSYLTDKDLFAEIYRNQLAKRLLNQRSSSDDAEICMISKLKLRCGAQFTGKMEGML 479
[Close]
BLAST of EWM26521.1 vs. NCBI_GenBank
Match: gi|224013748|ref|XP_002296538.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220968890|gb|EED87234.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 99.3673 bits (246), Expect = 1.840e-23
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0 
Query:    4 VVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVL 63
            +V LF++LTDKDLFAEIYRNQLAKRLLN RS+SDD EKLMI KLK +CG QFT K EG+L
Sbjct:   28 IVQLFSFLTDKDLFAEIYRNQLAKRLLNQRSASDDAEKLMIAKLKVQCGTQFTSKMEGML 87
[Close]
BLAST of EWM26521.1 vs. NCBI_GenBank
Match: gi|298711209|emb|CBJ32430.1| (CULlin protein 1 [Ectocarpus siliculosus])

HSP 1 Score: 101.293 bits (251), Expect = 2.299e-23
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 0 
Query:    4 VVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVL 63
            VV LF+YLTDKDLFAEIYRNQLA+RLLN+RS+SDD E+LMIGKLK +CG+QFT K EG++
Sbjct:  422 VVQLFSYLTDKDLFAEIYRNQLARRLLNSRSASDDMERLMIGKLKLKCGSQFTSKMEGMM 481
[Close]
BLAST of EWM26521.1 vs. NCBI_GenBank
Match: gi|953492043|emb|CEG45293.1| (cullin protein 1 [Plasmopara halstedii])

HSP 1 Score: 100.138 bits (248), Expect = 4.658e-23
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0 
Query:    1 MHDVVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVL 63
            +  VV +F+YLTDKDLFAEIYRNQLAKRLLN RS+S D E LMIGKLK RCGAQFTGK EG++
Sbjct:  418 LEKVVFVFSYLTDKDLFAEIYRNQLAKRLLNQRSASADAEVLMIGKLKLRCGAQFTGKMEGMM 480
[Close]
BLAST of EWM26521.1 vs. NCBI_GenBank
Match: gi|1214687751|gb|OWZ03930.1| (Cullin family protein [Phytophthora megakarya])

HSP 1 Score: 100.138 bits (248), Expect = 4.664e-23
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0 
Query:    1 MHDVVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVL 63
            +  VV +F+YLTDKDLFAEIYRNQLAKRLLN RS+S D E LMIGKLK RCGAQFTGK EG++
Sbjct:  418 LEKVVFVFSYLTDKDLFAEIYRNQLAKRLLNQRSASADAEVLMIGKLKLRCGAQFTGKMEGMM 480
[Close]
BLAST of EWM26521.1 vs. NCBI_GenBank
Match: gi|567948654|gb|ETK74397.1| (hypothetical protein L915_18816 [Phytophthora parasitica] >gi|567977322|gb|ETL27827.1| hypothetical protein L916_18712 [Phytophthora parasitica] >gi|568036664|gb|ETM34268.1| hypothetical protein L914_18630 [Phytophthora parasitica])

HSP 1 Score: 100.138 bits (248), Expect = 4.710e-23
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0 
Query:    1 MHDVVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVL 63
            +  VV +F+YLTDKDLFAEIYRNQLAKRLLN RS+S D E LMIGKLK RCGAQFTGK EG++
Sbjct:  418 LEKVVFVFSYLTDKDLFAEIYRNQLAKRLLNQRSASADAEVLMIGKLKLRCGAQFTGKMEGMM 480
[Close]
BLAST of EWM26521.1 vs. NCBI_GenBank
Match: gi|566011127|gb|ETI34038.1| (hypothetical protein F443_19394 [Phytophthora parasitica P1569] >gi|568006827|gb|ETL81075.1| hypothetical protein L917_18538 [Phytophthora parasitica] >gi|570314894|gb|ETO62842.1| hypothetical protein F444_19342 [Phytophthora parasitica P1976] >gi|570938669|gb|ETP03926.1| hypothetical protein F441_19215 [Phytophthora parasitica CJ01A1] >gi|570968961|gb|ETP32080.1| hypothetical protein F442_19165 [Phytophthora parasitica P10297] >gi|970633636|gb|KUF79208.1| Cullin-1 [Phytophthora nicotianae] >gi|970657689|gb|KUF95543.1| RAC family serine/threonine-protein kinase [Phytophthora nicotianae])

HSP 1 Score: 100.138 bits (248), Expect = 4.710e-23
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0 
Query:    1 MHDVVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVL 63
            +  VV +F+YLTDKDLFAEIYRNQLAKRLLN RS+S D E LMIGKLK RCGAQFTGK EG++
Sbjct:  418 LEKVVFVFSYLTDKDLFAEIYRNQLAKRLLNQRSASADAEVLMIGKLKLRCGAQFTGKMEGMM 480
[Close]
BLAST of EWM26521.1 vs. NCBI_GenBank
Match: gi|675176789|ref|XP_008897279.1| (hypothetical protein PPTG_05481 [Phytophthora parasitica INRA-310] >gi|568103082|gb|ETN17753.1| hypothetical protein PPTG_05481 [Phytophthora parasitica INRA-310])

HSP 1 Score: 100.138 bits (248), Expect = 5.191e-23
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 0 
Query:    1 MHDVVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHRCGAQFTGKAEGVL 63
            +  VV +F+YLTDKDLFAEIYRNQLAKRLLN RS+S D E LMIGKLK RCGAQFTGK EG++
Sbjct:  418 LEKVVFVFSYLTDKDLFAEIYRNQLAKRLLNQRSASADAEVLMIGKLKLRCGAQFTGKMEGMM 480
The following BLAST results are available for this feature:
BLAST of EWM26521.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108597|gb|EWM26521.1|1.256e-44100.00cullin protein 1 [Nannochloropsis gaditana][more]
gi|676378097|ref|XP_009032327.1|2.033e-2477.78hypothetical protein AURANDRAFT_52007 [Aureococcus... [more]
gi|698810158|ref|XP_009838108.1|1.171e-2377.78hypothetical protein H257_12555 [Aphanomyces astac... [more]
gi|224013748|ref|XP_002296538.1|1.840e-2376.67predicted protein, partial [Thalassiosira pseudona... [more]
gi|298711209|emb|CBJ32430.1|2.299e-2376.67CULlin protein 1 [Ectocarpus siliculosus][more]
gi|953492043|emb|CEG45293.1|4.658e-2376.19cullin protein 1 [Plasmopara halstedii][more]
gi|1214687751|gb|OWZ03930.1|4.664e-2376.19Cullin family protein [Phytophthora megakarya][more]
gi|567948654|gb|ETK74397.1|4.710e-2376.19hypothetical protein L915_18816 [Phytophthora para... [more]
gi|566011127|gb|ETI34038.1|4.710e-2376.19hypothetical protein F443_19394 [Phytophthora para... [more]
gi|675176789|ref|XP_008897279.1|5.191e-2376.19hypothetical protein PPTG_05481 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4162rna4162Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications