rna4162, rna4162 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4162
Unique Name	rna4162
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	565
Alignment location	CM002462.1:1016618..1017187 +

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Properties


Property Name	Value
Product	cullin protein 1
Orig transcript id	gnl\|cribi\|Naga_102804g1.6258.mrna
Orig protein id	gnl\|cribi\|Naga_102804g1.6258
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:1016618..1017187 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102804g1	gene4005	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4162	rna4162-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26521.1	cds4152	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:1016618..1017187+
coding sequence from alignment at CM002462.1:1016618..1017187+

mRNA sequence

>rna4162 ID=rna4162|Name=rna4162|organism=Nannochloropsis gaditana|type=mRNA|length=565bp
GTCGTTGTGTCGCCAACACAACAAGCCACATAACGACAAACAACGAAGTT
CTTGTGACAAGCTTCATTCCTTCCTTTCAATCCACCATTGACGCCCGCCC
CTCACTCCCTCACTCCCTCCCTCCCTCGCCCCCCTAGACCTTTCCCGCAT
GTATCGCCTCTTCTCCCGGGTCCCAAGCGGCCTCCTGCCCATGGCCAAGA
TCGTCCAAGCGCACATTGAGCGGATGGGGAACGAAGTCATCAATCAACGG
GAAGCCCGCATCCATGAGGAAGGAGAAAAGGACACGAACCAAGATCCCAA
TTTTGTGAAGGCCCTCCTCTCCCTCCACGACAAATTTGTAGGGGTTGTCA
ATGCCCAATTCGAAAAAAATTCTCTCTTCCACAAAGCGCTCAAGGAAGCC
TTTGTGGAGTTTGTCAACAAGGACGTGGGCAAATTTAAAAATGCAGATTT
GCTCTCCTCCTTTTGCGACCGGATACTTAAGAAGGGGGGGGAGAAACTGG
GGGACGCGGAGGTAGAAAACCATCTGGAGAAGGTAAGGGAGGATAGGAGG
GAGGGGGGGAGGTAG

protein sequence of rna4162

>rna4162-protein ID=rna4162-protein|Name=rna4162|organism=Nannochloropsis gaditana|type=polypeptide|length=70bp
MHDVVNLFTYLTDKDLFAEIYRNQLAKRLLNARSSSDDWEKLMIGKLKHR
CGAQFTGKAEGVLTRTKRRA

mRNA from alignment at CM002462.1:1016618..1017187+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4162 ID=rna4162|Name=rna4162|organism=Nannochloropsis gaditana|type=mRNA|length=570bp|location=Sequence derived from alignment at CM002462.1:1016618..1017187+ (Nannochloropsis gaditana)
ATGCACGATGTAGGGCGCGGGCTCACGTGCCGCACGTCTCTCAACCGCTC
CACCAGGTGGTCAACTTATTCACCTACCTGACGGACAAGGACCTTTTTGC
CGAAATTTACCGAAATCAGTTGGCCAAGCGTCTTTTAAACGCGCGGTACG
CCCCATTTCTCAGTGTTGCTATCCTTTTAGTACTAGCTAACTATCTGTGT
CCGTTCCCGGGCTTTTCGGACTCGCTGGCACCATCCtcatttccctttcc
ctccttccctccctccctctctccctaccCCCCGCatgcctccagctcct
cctcggacgaCTGGGAGAAGCTGATGATTGGAAAACTCAAACACCGATGC
GGCGCTCAATTTACTGGCAAGGTAGGTTTCATCGCGCAGGGAGGTAGTGG
AGAAAGGATAGGtgaacaggagggagggatggggcgaccgaggaagggat
ggagggaaaagagggtcGCGGATGGAGAAGTACAGCCTATAGAATTGACT
GTAGGAGAGTCTGTTGGAGAGAGACAATCAGGCTGAAGGGGTCTTGACGA
GAACCAAGCGTCGTGCCTGA

Coding sequence (CDS) from alignment at CM002462.1:1016618..1017187+

>rna4162 ID=rna4162|Name=rna4162|organism=Nannochloropsis gaditana|type=CDS|length=852bp|location=Sequence derived from alignment at CM002462.1:1016618..1017187+ (Nannochloropsis gaditana)
ATGCACGATGTGGTCAACTTATTCACCTACCTGACGGACAAGGACCTTTT
TGCCGAAATTTACCGAAATCAGTTGGCCAAGCGTCTTTTAAACGCGCGct
cctcctcggacgaCTGGGAGAAGCTGATGATTGGAAAACTCAAACACCGA
TGCGGCGCTCAATTTACTGGCAAGGCTGAAGGGGTCTTGACGAGAACCAA
GCGTCGTGCCTGAATGCACGATGTGGTCAACTTATTCACCTACCTGACGG
ACAAGGACCTTTTTGCCGAAATTTACCGAAATCAGTTGGCCAAGCGTCTT
TTAAACGCGCGctcctcctcggacgaCTGGGAGAAGCTGATGATTGGAAA
ACTCAAACACCGATGCGGCGCTCAATTTACTGGCAAGGCTGAAGGGGTCT
TGACGAGAACCAAGCGTCGTGCCTGAATGCACGATGTGGTCAACTTATTC
ACCTACCTGACGGACAAGGACCTTTTTGCCGAAATTTACCGAAATCAGTT
GGCCAAGCGTCTTTTAAACGCGCGctcctcctcggacgaCTGGGAGAAGC
TGATGATTGGAAAACTCAAACACCGATGCGGCGCTCAATTTACTGGCAAG
GCTGAAGGGGTCTTGACGAGAACCAAGCGTCGTGCCTGAATGCACGATGT
GGTCAACTTATTCACCTACCTGACGGACAAGGACCTTTTTGCCGAAATTT
ACCGAAATCAGTTGGCCAAGCGTCTTTTAAACGCGCGctcctcctcggac
gaCTGGGAGAAGCTGATGATTGGAAAACTCAAACACCGATGCGGCGCTCA
ATTTACTGGCAAGGCTGAAGGGGTCTTGACGAGAACCAAGCGTCGTGCCT
GA

Synonyms

Publications