rna4160, rna4160 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4160
Unique Name	rna4160
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2080
Alignment location	CM002462.1:1013854..1015137 +

Link to JBrowse

Properties


Property Name	Value
Product	cullin protein 1
Orig transcript id	gnl\|cribi\|Naga_100141g1.8376.mrna
Orig protein id	gnl\|cribi\|Naga_100141g1.8376
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:1013854..1015137 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100141g1	gene4003	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4160	rna4160-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26529.1	cds4150	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:1013854..1015137+
coding sequence from alignment at CM002462.1:1013854..1015137+

mRNA sequence

>rna4160 ID=rna4160|Name=rna4160|organism=Nannochloropsis gaditana|type=mRNA|length=2080bp
GAACCCGGGCGCCGTCAGGTCCAAGCATGCACTCACCAACTACTATAACG
AGTATAGAATGATATTCTGGGCATTTCACGCCATGAGTGTGGCTTTAGGA
ATCGGCAACGGAGAGACCGTCCTACCATTTTCCTTCCCCTGTGCCCTTGC
CACCGACGAGGGTTGAGCTCGAAGGCAAAAACATACACTCGTGATTTCCC
CATACACACGAGAAGGAGAAAGCATCTACCACCATAGGTGCAGGCAGGAC
ATTTTGGCCGCGGTGTGTCTTCACGAGCGGTGTCGTGAAGACTTTCTTGT
GTTCTTCCGTTCTCCTGGATTTTGACATGATTTTTTATGACTTTCAAAAC
AGCAGGACGGCAGCAGCAGGCAGGTCTTGCCCGACAATTGAAATCTTATC
TCAGGCCTCGCCATGTATTTTCCTCTGATCTCCCTTCACAGGACACATCT
TTAGTCCATGCGATGGGAAGAATGGCAAAATTTTGCCGTTTTGTTGCCCT
TGTCCTCGTCCTGCTCTTCAATAGCGTAGTGACAGGTGAATATGTCCGAG
GACCTTTGCGGCCAGAGTCGAGGGACTTGTCAAGCACGGGTCTGGATGGG
CTCACATACAGTGCAGACGAGAAGCATGCATCTGCGCACTTTCCCCCACG
CCTGCTCCGCCCCGCCCGAAGCCAAGCCCGTGTCCAACACCAAGTGAAGC
GGGACATGATTTCCTCCGTCTTCCTCGGAGCCGCGCTTGCCTTTGTCTTC
CTGGCGGCCTTGGTGGTGATCCGCTGCAACTGTGCACGCGTGTTTCCCTG
CATCTGTGGGGAGGAGGCGCTGGCGGCCAGGAACGAGCTTTTGAAGGACG
TGAGTCGGTCGTTCATGAAGATGAAGGAGGAGGAGGAGGAGGAGGTGGAC
ATCGTGGGCGAGGAAGGGGGACCAGACGGGCCCCCGACCAGGGTCCACGG
CTCGGAGGAGGCGTTGGACGGGCAGGTGCTCGACAAAGGGAGAAGGGGAG
GAGAGGAGGAAAAGAAAGAGGAAGGAGCGGAGGCGATGGAGGAGAAGAAG
GCTCCGGCTGCCCCGTCGACCACATCCTTGTCGGAATGGGTAGCCTCCCT
GGGGTTGTTGGCAGGCCAGGCGCGTGTGCGGCCGTGGGCGGCGGCAAAGG
TGGACGACGGGGCGCAGACGACAGGGAAAAAGGGGGAAGACCGGTCCCGT
GGGGAGTGGGAGGATCGGACGCAGGGGGGGAGGGAGGAGTCGAAGCAGTA
CAGCGGGTTCGAGTGAGGTCTCCTAGGAGGGCGAAGAAAGGGAGGGGGGG
GCGGGCGGGGGGGGCGAGGATTGCGTGGAGGACGCCGGGTGCATAGGCGA
TTGAAAGTACTAGAGAGGCGCAAAGCACGAGACGGTTTGGGAGGGTGGCA
TACCCAACAGAAGAATGCGGAGGGGGAAGTGCATCCGACGATGAACTTGA
AAATAATATGTTGAATTTAGTTTTAGATTGTAAGTACAATGTATCGTTGT
GCCATCCCCGAGATCTACCCGCCAGCCGGCCACAAGGCGCGTGCCAAGAA
AGTATCTGTAGGCGGGAGAGAGGCAGCGTTGGAGGGAAGAGTAGAGGGGG
GGAAGGCAGTAATCCGGGTCGGAGCAGGTAGGATACTCTGTCGATCGAGG
GGGGAGGTGAGTGAGTGTCTGGGACGCTGAATCGGAGCAATGCACGAGAA
GGCGGTGGGGAATGTCGGGAGGCGGGGCAAGTGGAGGAAAGTGGCTGGCG
AACGACTGGATGGCGGCCTTGGAGGCTGAGATCCAACTGTCACTCAAGCG
CGCCTAACAGGCGATCACGGAAGGATGTGCTCAGGGCTTGAGGCGAAAAA
AAGGAAGAGAGAGGGGACAGGGAGGACAAGAGAAAGGATGGAGGGAGGGA
ACAAGCTACTAAAGTGACATGAACCAGAGCTTTGTAAAAGGGATTCATGC
GCGGCCAGACATGGCTCTGTGGGCGACACTTTCAGAGGATTATTCTTGGA
GGAAAGGGAGGCGATCGATTGGTTTGTGATTTTCGCTGGCGGACATGTCG
AAAAAGAACCAAAGACATGCAGTCTTTCAT

protein sequence of rna4160

>rna4160-protein ID=rna4160-protein|Name=rna4160|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MASAPPPNPITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREY
VHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKEY
LLVEVKRRWENHKIMNEWMRKFFMYLDRSSRSRCTTWSNRTWCRRCWL

mRNA from alignment at CM002462.1:1013854..1015137+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4160 ID=rna4160|Name=rna4160|organism=Nannochloropsis gaditana|type=mRNA|length=1284bp|location=Sequence derived from alignment at CM002462.1:1013854..1015137+ (Nannochloropsis gaditana)
ATGGCGAGTGCGCCTCCCCCGAACCCCATCACAATCGaagagggatggga
aaaggaaattCTGCCCAAGGCCATCCTGCCTTTGGAACGCATTTTGAACG
AGGGATTGCAAGACCGGCAGAGACGTGACCTTTTTGGGCCCCGGGAATAC
GTGCACATCTACACGTGAGTGTTTGATGCGATGGAAagcgggcaagggga
aggaataaAAGTGGAGGGGCCAGGTGGAGGGTACAAGAGTGCAGTGAAGG
AAGCAATCGGCTGACACGAATCCTTGCTGACAATCTCCTTCTACGGCTCT
CTTTTCACGTATGTACAGAATCTGCTACAACATGTGCACGCAGCGCAACC
CTTTTAACTGGTCAGAACCGCTTTATCAAAAACACAacgaggtagggagg
gagagatggaggtggtgataacgggagaggaggaaggaagggggttcTCA
GTCCGTCATAAAGACGACAAGGGTAAAAATGCCCAGGAAGCAATCGAAGG
AGCACATGACattggaggaaaaggtggtAGCACCACCCCTTTGACCGCTC
Gaactctccttccctccctccctccctccctccctccctccctccctcct
cgcccagacCATCTCGGACTACCTGACGCGGAcggtccttccctccctcc
ggaaCCATCACAAAGAATACCTCTTGGTGGAAGTTAAACGCCGATGGGAG
AACCATAAAATTATGAACGAGTGGATGCGGAAATTTTTCATGTACCTGGT
AAGaaaatccctccctccctccctcccttccctcccttccctccctctct
cccgccctccctcccttcctccctccctcacggcTGATAGGGCCCCTTTC
GACCTCCTTTACACTCCTACcaccttttcccttcttgtctCCTCGCGTTC
CATGCAATGTGGTACAGTTTCATACTTTGAGTGCTGCTTTGAGGATTGAT
TCGCGCACtttctcattctcctccctcccctcccccttcccaccctccct
tcctccccccgtgcCAGGACCGGTACTATGTGAAGCACAACAATTTGACG
TCTCTGCATGTGTCGGGCATCAAGTTCTTCAAGGAGCAGGTCAGGAGGGC
TTACAAAGCGACGAAAGAGCCcacgaagggggagggagggggttcgCACG
GAGTCGTAGGGCTCTCTTTGTCTCCGCCGTCTTCCATTCCTTGTTTCACC
ACCCGACGCGTTCCCGCTCCTTTCACTCCCTTCAGGTGTACGACGTGGTC
AAACCGGACGTGGTGCAGGCGATGCTGGCTATGA

Coding sequence (CDS) from alignment at CM002462.1:1013854..1015137+

>rna4160 ID=rna4160|Name=rna4160|organism=Nannochloropsis gaditana|type=CDS|length=2682bp|location=Sequence derived from alignment at CM002462.1:1013854..1015137+ (Nannochloropsis gaditana)
ATGGCGAGTGCGCCTCCCCCGAACCCCATCACAATCGaagagggatggga
aaaggaaattCTGCCCAAGGCCATCCTGCCTTTGGAACGCATTTTGAACG
AGGGATTGCAAGACCGGCAGAGACGTGACCTTTTTGGGCCCCGGGAATAC
GTGCACATCTACACAATCTGCTACAACATGTGCACGCAGCGCAACCCTTT
TAACTGGTCAGAACCGCTTTATCAAAAACACAacgagacCATCTCGGACT
ACCTGACGCGGAcggtccttccctccctccggaaCCATCACAAAGAATAC
CTCTTGGTGGAAGTTAAACGCCGATGGGAGAACCATAAAATTATGAACGA
GTGGATGCGGAAATTTTTCATGTACCTGGACCGTTCTTCAAGGAGCAGGT
GTACGACGTGGTCAAACCGGACGTGGTGCAGGCGATGCTGGCTATGAATG
GCGAGTGCGCCTCCCCCGAACCCCATCACAATCGaagagggatgggaaaa
ggaaattCTGCCCAAGGCCATCCTGCCTTTGGAACGCATTTTGAACGAGG
GATTGCAAGACCGGCAGAGACGTGACCTTTTTGGGCCCCGGGAATACGTG
CACATCTACACAATCTGCTACAACATGTGCACGCAGCGCAACCCTTTTAA
CTGGTCAGAACCGCTTTATCAAAAACACAacgagacCATCTCGGACTACC
TGACGCGGAcggtccttccctccctccggaaCCATCACAAAGAATACCTC
TTGGTGGAAGTTAAACGCCGATGGGAGAACCATAAAATTATGAACGAGTG
GATGCGGAAATTTTTCATGTACCTGGACCGTTCTTCAAGGAGCAGGTGTA
CGACGTGGTCAAACCGGACGTGGTGCAGGCGATGCTGGCTATGAATGGCG
AGTGCGCCTCCCCCGAACCCCATCACAATCGaagagggatgggaaaagga
aattCTGCCCAAGGCCATCCTGCCTTTGGAACGCATTTTGAACGAGGGAT
TGCAAGACCGGCAGAGACGTGACCTTTTTGGGCCCCGGGAATACGTGCAC
ATCTACACAATCTGCTACAACATGTGCACGCAGCGCAACCCTTTTAACTG
GTCAGAACCGCTTTATCAAAAACACAacgagacCATCTCGGACTACCTGA
CGCGGAcggtccttccctccctccggaaCCATCACAAAGAATACCTCTTG
GTGGAAGTTAAACGCCGATGGGAGAACCATAAAATTATGAACGAGTGGAT
GCGGAAATTTTTCATGTACCTGGACCGTTCTTCAAGGAGCAGGTGTACGA
CGTGGTCAAACCGGACGTGGTGCAGGCGATGCTGGCTATGAATGGCGAGT
GCGCCTCCCCCGAACCCCATCACAATCGaagagggatgggaaaaggaaat
tCTGCCCAAGGCCATCCTGCCTTTGGAACGCATTTTGAACGAGGGATTGC
AAGACCGGCAGAGACGTGACCTTTTTGGGCCCCGGGAATACGTGCACATC
TACACAATCTGCTACAACATGTGCACGCAGCGCAACCCTTTTAACTGGTC
AGAACCGCTTTATCAAAAACACAacgagacCATCTCGGACTACCTGACGC
GGAcggtccttccctccctccggaaCCATCACAAAGAATACCTCTTGGTG
GAAGTTAAACGCCGATGGGAGAACCATAAAATTATGAACGAGTGGATGCG
GAAATTTTTCATGTACCTGGACCGTTCTTCAAGGAGCAGGTGTACGACGT
GGTCAAACCGGACGTGGTGCAGGCGATGCTGGCTATGAATGGCGAGTGCG
CCTCCCCCGAACCCCATCACAATCGaagagggatgggaaaaggaaattCT
GCCCAAGGCCATCCTGCCTTTGGAACGCATTTTGAACGAGGGATTGCAAG
ACCGGCAGAGACGTGACCTTTTTGGGCCCCGGGAATACGTGCACATCTAC
ACAATCTGCTACAACATGTGCACGCAGCGCAACCCTTTTAACTGGTCAGA
ACCGCTTTATCAAAAACACAacgagacCATCTCGGACTACCTGACGCGGA
cggtccttccctccctccggaaCCATCACAAAGAATACCTCTTGGTGGAA
GTTAAACGCCGATGGGAGAACCATAAAATTATGAACGAGTGGATGCGGAA
ATTTTTCATGTACCTGGACCGTTCTTCAAGGAGCAGGTGTACGACGTGGT
CAAACCGGACGTGGTGCAGGCGATGCTGGCTATGAATGGCGAGTGCGCCT
CCCCCGAACCCCATCACAATCGaagagggatgggaaaaggaaattCTGCC
CAAGGCCATCCTGCCTTTGGAACGCATTTTGAACGAGGGATTGCAAGACC
GGCAGAGACGTGACCTTTTTGGGCCCCGGGAATACGTGCACATCTACACA
ATCTGCTACAACATGTGCACGCAGCGCAACCCTTTTAACTGGTCAGAACC
GCTTTATCAAAAACACAacgagacCATCTCGGACTACCTGACGCGGAcgg
tccttccctccctccggaaCCATCACAAAGAATACCTCTTGGTGGAAGTT
AAACGCCGATGGGAGAACCATAAAATTATGAACGAGTGGATGCGGAAATT
TTTCATGTACCTGGACCGTTCTTCAAGGAGCAGGTGTACGACGTGGTCAA
ACCGGACGTGGTGCAGGCGATGCTGGCTATGA

Synonyms

Publications