EWM26529.1, cds4150 (CDS) Nannochloropsis gaditana

Overview
NameEWM26529.1
Unique Namecds4150
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1013854..1014017 +
Alignment locationCM002462.1:1014172..1014244 +
Alignment locationCM002462.1:1014461..1014601 +
Alignment locationCM002462.1:1014871..1014875 +
Alignment locationCM002462.1:1014928..1014942 +
Alignment locationCM002462.1:1015089..1015137 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26529.1
Productcullin protein 1
Orig transcript idgnl|cribi|Naga_100141g1.8376.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1013854..1014017 +
CM002462.1supercontigCM002462.1:1014172..1014244 +
CM002462.1supercontigCM002462.1:1014461..1014601 +
CM002462.1supercontigCM002462.1:1014871..1014875 +
CM002462.1supercontigCM002462.1:1014928..1014942 +
CM002462.1supercontigCM002462.1:1015089..1015137 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0031625ubiquitin protein ligase binding
Vocabulary: INTERPRO
TermDefinition
IPR016159Cullin_repeat-like_dom
IPR001373Cullin_N
Homology
BLAST of EWM26529.1 vs. NCBI_GenBank
Match: gi|585108607|gb|EWM26529.1| (cullin protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 308.531 bits (789), Expect = 2.336e-106
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0
Query:    1 MASAPPPNPITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKEYLLVEVKRRWENHKIMNEWMRKFFMYLDRSSRSRCTTWSNRTWCRRCWL 148
            MASAPPPNPITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKEYLLVEVKRRWENHKIMNEWMRKFFMYLDRSSRSRCTTWSNRTWCRRCWL
Sbjct:    1 MASAPPPNPITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKEYLLVEVKRRWENHKIMNEWMRKFFMYLDRSSRSRCTTWSNRTWCRRCWL 148          
BLAST of EWM26529.1 vs. NCBI_GenBank
Match: gi|676378097|ref|XP_009032327.1| (hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens] >gi|323456805|gb|EGB12671.1| hypothetical protein AURANDRAFT_52007 [Aureococcus anophagefferens])

HSP 1 Score: 178.333 bits (451), Expect = 1.500e-49
Identity = 77/122 (63.11%), Postives = 93/122 (76.23%), Query Frame = 0
Query:    7 PNPITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKEYLLVEVKRRWENHKIMNEWMRKFFMYLDR 128
            P  I +EEGW  EI  KAI  LE +LN G   + +R LF P+EYV  YT CYNMCTQR+P+NWSE LYQ+H ETI DYLT+TVLP+LR+ H ++LL E+ +RW NHKIMN+WMR FFMYLDR
Sbjct:    4 PKIIALEEGWNNEIKAKAIDVLEEMLNNGFDQKSQR-LFAPKEYVQTYTTCYNMCTQRSPYNWSEQLYQRHGETICDYLTKTVLPALRHQHNDFLLTELTKRWANHKIMNKWMRLFFMYLDR 124          
BLAST of EWM26529.1 vs. NCBI_GenBank
Match: gi|298711209|emb|CBJ32430.1| (CULlin protein 1 [Ectocarpus siliculosus])

HSP 1 Score: 150.984 bits (380), Expect = 7.605e-40
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 0
Query:   10 ITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKEYLLVEVKRRWENHKIMNEWMRKFFMYLDR 128
            I++E+GW   I P AI  LE  LN G  D++   LF P++++  YT CY+MCTQR+P+NWSE LY +H ETIS YL+ TV+ +LR  H E+LL E+ RRW NHKIMN+WM+KFF YLDR
Sbjct:    9 ISLEDGWCNNIKPNAINVLEDHLNRGF-DKRTSQLFTPKDFMSTYTTCYDMCTQRSPYNWSEQLYDRHGETISQYLSGTVVNALREQHGEFLLKELVRRWSNHKIMNQWMQKFFQYLDR 126          
BLAST of EWM26529.1 vs. NCBI_GenBank
Match: gi|219124703|ref|XP_002182637.1| (CULlin protein 1 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405983|gb|EEC45924.1| CULlin protein 1 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 148.673 bits (374), Expect = 9.390e-39
Identity = 68/122 (55.74%), Postives = 89/122 (72.95%), Query Frame = 0
Query:   10 ITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKE---YLLVEVKRRWENHKIMNEWMRKFFMYLDR 128
            I +EEGW  EI  KAI  LE +LN GL+  +  ++FGPREYV IYT CY+MCTQR+P+NWS  LYQ+H ETI  YL  TV+P+LR+   +    LL E++ RW +H+IMN+W++KFF YLDR
Sbjct:    9 IPLEEGWNDEIKAKAIDKLEAMLNGGLKSGET-NMFGPREYVQIYTTCYDMCTQRSPYNWSRELYQRHGETIERYLASTVIPALRDKTGQGGTTLLTELQHRWGDHQIMNKWLKKFFTYLDR 129          
BLAST of EWM26529.1 vs. NCBI_GenBank
Match: gi|1173949084|gb|OQR97158.1| (CULlin protein 1 [Achlya hypogyna])

HSP 1 Score: 147.902 bits (372), Expect = 1.652e-38
Identity = 70/128 (54.69%), Postives = 94/128 (73.44%), Query Frame = 0
Query:    1 MASAPPPNPITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKEYLLVEVKRRWENHKIMNEWMRKFFMYLDR 128
            MAS P    I +E+GW+++I PK I  L  IL++G  D+ +   F P++Y+ IYTICY+MCTQR P+NWS  LY +H ET ++YL  +VLP L+N H E+LL E+ RRW+NHK+MN+WM KFFMYLDR
Sbjct:    1 MASKPL---IELEQGWKEQIKPKGIDILLNILDKGF-DKVQVCPFPPQQYMPIYTICYDMCTQRTPYNWSAQLYTRHGETFTEYLRSSVLPELQNQHDEFLLNELHRRWQNHKLMNKWMAKFFMYLDR 124          
BLAST of EWM26529.1 vs. NCBI_GenBank
Match: gi|1072228904|gb|OEU13639.1| (cullin-like protein 1 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 147.132 bits (370), Expect = 2.707e-38
Identity = 68/122 (55.74%), Postives = 87/122 (71.31%), Query Frame = 0
Query:   10 ITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKE---YLLVEVKRRWENHKIMNEWMRKFFMYLDR 128
            I ++EGW+ EI  KAI  LE +LN  L       +FGP+EYV IYT CY+MCTQR+P+NWS  LYQ+H ETI  YLT  VLP+LR+   +    LL E+K RW+NH+IMN+W++KFF YLDR
Sbjct:   12 IPLDEGWDDEIKAKAIDRLEGLLNGDLTG----SIFGPKEYVQIYTTCYDMCTQRSPYNWSRELYQRHGETIERYLTTNVLPALRDKTSQGGTILLSELKHRWQNHQIMNKWLKKFFTYLDR 129          
BLAST of EWM26529.1 vs. NCBI_GenBank
Match: gi|1210511905|dbj|GAX29145.1| (cullin 1 [Fistulifera solaris])

HSP 1 Score: 147.132 bits (370), Expect = 2.724e-38
Identity = 71/131 (54.20%), Postives = 95/131 (72.52%), Query Frame = 0
Query:    1 MASAPPPNPITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKE---YLLVEVKRRWENHKIMNEWMRKFFMYLDR 128
            MA+A     I +EEGW +EI  KA+  L+ ILNE +Q  Q  +LFGP+EYV IYT CY+MCTQR+P+NWS  LYQ+H ETI  YL   VLP+L++  ++    LL E++ RW+NH+IMN+W++KFF YLDR
Sbjct:    1 MANAKV---IPLEEGWNEEIKAKALDKLQNILNEDMQTGQT-NLFGPKEYVQIYTTCYDMCTQRSPYNWSRELYQRHGETIEQYLNDYVLPALKDKPRQGPNILLTELQHRWKNHQIMNKWLKKFFTYLDR 127          
BLAST of EWM26529.1 vs. NCBI_GenBank
Match: gi|669138794|ref|XP_008604965.1| (hypothetical protein SDRG_01226 [Saprolegnia diclina VS20] >gi|530743009|gb|EQC41251.1| hypothetical protein SDRG_01226 [Saprolegnia diclina VS20])

HSP 1 Score: 146.362 bits (368), Expect = 5.098e-38
Identity = 70/128 (54.69%), Postives = 92/128 (71.88%), Query Frame = 0
Query:    1 MASAPPPNPITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKEYLLVEVKRRWENHKIMNEWMRKFFMYLDR 128
            MAS P    I +E+GW+++I PK I  L  IL++G  D+     F P+ Y+ IYTICY+MCTQR P+NWS  LY +H ET ++YL + VLP L+N H E+LL E+ RRW+NHK+MN+WM KFFMYLDR
Sbjct:    1 MASKPL---IELEQGWKEQIKPKGIDILLDILDKGF-DKVAACPFPPQSYMPIYTICYDMCTQRTPYNWSAQLYTRHGETFTEYLRQKVLPELQNQHDEFLLNELHRRWQNHKLMNKWMSKFFMYLDR 124          
BLAST of EWM26529.1 vs. NCBI_GenBank
Match: gi|635360684|emb|CCI10766.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 146.747 bits (369), Expect = 5.397e-38
Identity = 69/119 (57.98%), Postives = 88/119 (73.95%), Query Frame = 0
Query:   10 ITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKEYLLVEVKRRWENHKIMNEWMRKFFMYLDR 128
            IT+EEGW+ EI PKAI  L  ILN G ++      F P+ ++ IYT CYNMCTQR+PFN+SE LY+ H ET  +YL +TVLPSL+  H E+ L ++ +RWENHKIMN+WM KFFMYL+R
Sbjct:    2 ITLEEGWDHEIKPKAIDVLLDILNRGFENVHEGP-FPPKVFMPIYTTCYNMCTQRSPFNYSEQLYKLHGETFDEYLEKTVLPSLQQTHDEFFLPQLVKRWENHKIMNQWMYKFFMYLNR 119          
BLAST of EWM26529.1 vs. NCBI_GenBank
Match: gi|813109733|ref|XP_012194667.1| (hypothetical protein SPRG_01077 [Saprolegnia parasitica CBS 223.65] >gi|641541251|gb|KDO35014.1| hypothetical protein SPRG_01077 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 145.591 bits (366), Expect = 9.405e-38
Identity = 70/128 (54.69%), Postives = 91/128 (71.09%), Query Frame = 0
Query:    1 MASAPPPNPITIEEGWEKEILPKAILPLERILNEGLQDRQRRDLFGPREYVHIYTICYNMCTQRNPFNWSEPLYQKHNETISDYLTRTVLPSLRNHHKEYLLVEVKRRWENHKIMNEWMRKFFMYLDR 128
            MAS P    I +E+GW+++I PK I  L  IL++G  D+     F P+ Y+ IYTICY+MCTQR P+NWS  LY +H ET ++YL   VLP L+N H E+LL E+ RRW+NHK+MN+WM KFFMYLDR
Sbjct:    1 MASKPL---IELEQGWKEQIKPKGIDILLDILDKGF-DKVAACPFPPQSYMPIYTICYDMCTQRTPYNWSAQLYTRHGETFTEYLRTKVLPELQNQHDEFLLNELHRRWQNHKLMNKWMSKFFMYLDR 124          
The following BLAST results are available for this feature:
BLAST of EWM26529.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108607|gb|EWM26529.1|2.336e-106100.00cullin protein 1 [Nannochloropsis gaditana][more]
gi|676378097|ref|XP_009032327.1|1.500e-4963.11hypothetical protein AURANDRAFT_52007 [Aureococcus... [more]
gi|298711209|emb|CBJ32430.1|7.605e-4056.30CULlin protein 1 [Ectocarpus siliculosus][more]
gi|219124703|ref|XP_002182637.1|9.390e-3955.74CULlin protein 1 [Phaeodactylum tricornutum CCAP 1... [more]
gi|1173949084|gb|OQR97158.1|1.652e-3854.69CULlin protein 1 [Achlya hypogyna][more]
gi|1072228904|gb|OEU13639.1|2.707e-3855.74cullin-like protein 1 [Fragilariopsis cylindrus CC... [more]
gi|1210511905|dbj|GAX29145.1|2.724e-3854.20cullin 1 [Fistulifera solaris][more]
gi|669138794|ref|XP_008604965.1|5.098e-3854.69hypothetical protein SDRG_01226 [Saprolegnia dicli... [more]
gi|635360684|emb|CCI10766.1|5.397e-3857.98unnamed protein product [Albugo candida][more]
gi|813109733|ref|XP_012194667.1|9.405e-3854.69hypothetical protein SPRG_01077 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4160rna4160Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications