rna4135, rna4135 (mRNA) Nannochloropsis gaditana

Overview
Namerna4135
Unique Namerna4135
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1375
Alignment locationCM002462.1:954862..955874 -

Link to JBrowse

Properties
Property NameValue
Productputative methyltransferase wbscr22
Orig transcript idgnl|cribi|Naga_100084g1.1572.mrna
Orig protein idgnl|cribi|Naga_100084g1.1572
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:954862..955874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100084g1gene3980Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4135rna4135-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26564.1cds4125Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4135 ID=rna4135|Name=rna4135|organism=Nannochloropsis gaditana|type=mRNA|length=1375bp
AGAGGAGTTGCTCACACGATACACCGCCGCGAATCAGCCTTACTCTTGTC
TTAAAAAGCACCAGAATAAGGCGGCATTGACATACGTTTGCAATGGTCAA
ATCATTCTTTTCTCTCTTCTCCCTGTTTTACCATCGCTTTTCTTTAGGAA
GCCACAGGGCGAGGCCCGTTCCGTACCAATGAAGGTCGCTGCAGCGTGCC
AACGCCTAAGACACGATCCCCGCCGGTACGCACGGCTCCGGCAATCATGC
ATCCCCCGTGCCACGCATGGCACACCAGTACGGAATTTTTTCAGTTTCGG
AAAGGAGGAAAGAGCCAACGAGAGGGGGGGGCGTCGTGGCGCCTCAGTCC
CCCCTCGCCCTCCCATGGCGCCAGGACACGTCTCCCCTCGTCGGGCACTG
CCTGCCAATAGCCCTGTAGTCAAACCGAACTACGCCGATACGGGCAAGCT
GCCGCCTCCCTCCCCTTCCATTCTCCTGCACACCCCTGAAAGTATCGAGA
AAATGCGGGCTGCGGGTCGATTGGCCCGGAAAATGCTGGATTACACATGC
TCGCTCGTGCGGCCGGGCATCACCACGGAAGAAATCGACAGGCGCGTGCA
TGACGCTATTCTTGCCTCGGGCGCGTATCCGTCCCCCCTCAATTATTGGG
GCTTCCCCAAGTCGATTTGCTCCTCCATCAATGAAGTGGTGATCCACGGG
ATCCCTGACGACCGCCCTCTCCAAGAGGGAGACATCGCCAAATTCGACAT
CTCCCTCTACTTCCAGGGCGTGCACGGGGACAACTGCGCCTCTGTGGGTG
TGGGAGAGGTGGATGCGGAGGGTTTGCGGCTCATGACCGCGGCGAAGGAA
GCTTTACAAGCTGGGATCGACGCTTGTGGACCGGGAGCCTGCCTGAGTGG
CATTGGGTCTGCCGTGCACGCCGTGGCCGACAAGTATGAATACGAGACGG
TGCGTGCCTATAGTGGGCACGGAGTGGGCCCGGATTTGCACATGCGCCCT
TTTGTTTTGCACTACCGGAACGGGGAACGCTTGCCCCTTCGTCCGGGTAT
GATTTTCACGATCGAACCCATGCTGTTGGAGCATGGCCCGGAGATCACCA
CATGGGCGGACGGATGGACAGTCGTAAGCAAGGACGGCGGGAGGGGTGCC
CAATTTGAGCACACGGTACTAATTACGGAGGATGGGGTGGAGGTGTTGAC
GCTTCCTGAGTGAGGGCGGGGTGGTGGGGGAGGGGGCAGGCCCCTGCTTT
TCCCCATGGCGGGTCGAAGTGAAGAACGACGGATGTACATATCAACGTCG
CGGGAAATTTTTTGAGTTTCAATTCCAGGCAGCATAATCCTAACATAGCA
ACGTCACGGCATGCATCTTCATTTC
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protein sequence of rna4135

>rna4135-protein ID=rna4135-protein|Name=rna4135|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
MGQGLPFRAACFDGAVSISALQWLCYEDSKAQSANARLMRFFASLYTVLR
RGARAALQFYPENSEQVLLITQAATRVGFQGGLVVDYPNSSKAKKYYLCL
SFEHSYRVPQALGREEGGRALTSVGVTERERVKPRGRKKGGKREQVKSRE
WVLAKKEKQRRKGLDVREDSKYTARKRKDRL
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mRNA from alignment at CM002462.1:954862..955874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4135 ID=rna4135|Name=rna4135|organism=Nannochloropsis gaditana|type=mRNA|length=1013bp|location=Sequence derived from alignment at CM002462.1:954862..955874- (Nannochloropsis gaditana)
GATGTGCTTCAACGGGACATGGGCCAGGGTCTTCCCTTCCGAGCCGCGTG
CTTTGACGGGGCTGTCTCCATTTCCGCGTTGCAGTGGCTCTGCTACGAGG
ACAGCAAGGCTCAGTCGGCCAATGCCCGCTTGATGCGCTTCTTTGCCTCC
CTCTACACAGTCCTACGCCGGGGGGCCAGGGCGGCTTTACAATTCTATCC
GGGTACAGTTGTCCTCCCTTTTCCTTAGTCTTTTTGTTCCTTGGTCCTTC
CCTCCCCGACCCTGCCCGGGCTGCACTTTTGCACGCTGGTGGTGTTTCAA
CCGTATGTATTACATGAGACTATCTGGCTGTGCACTTGGGTCAGAAACCT
CCCAGAGGGTCCTTTAGGACCGGCTTGTCTTGATCGAGCACATCATGGAC
ACAATTGTCGGGCGTGGCCCATCGCCTATCCCTCACTTTGTCTCCCCTCA
TCCATCCGCCGTCCCTTGTCGTGTCAGAGAATTCCGAGCAAGTGCTCCTC
ATCACCCAAGCGGCCACCCGCGTGGGATTCCAAGGAGGGCTTGTAGTCGA
TTACCCCAACAGTAGCAAAGCCAAAAAGTACTATTTGTGTCTCTCCTTTG
AGCACAGCTACAGGGTGCCGCAAGCACTTGGTCGGGAAGAGGGAGGTCGG
GCGTTGACGAGTGTGGGTGTCACTGAAAGGGAGAGGGTGAAGCCGCGAGG
GAGGAAGAAGGGGGGAAAGCGGGAGCAGGTCAAAAGCCGGGAGTGGGTGC
TGGCCAAGAAGGAAAAACAGAGGCGAAAGGGACTGGATGTACGCGAGGAC
AGTAAATATACGGCACGGAAACGAAAAGATCGATTGTAATAGGTGAAACG
CAGCCGTAGGTCGTGGAGGGAGGAGGTTAAGACTGTACAAAAGCAATAAA
TTTTGTGCGCCCCGCTGGAACATTTGACGCCTATGTCGAAGTCTTGATCT
ATGTTTCTCTTCCTTCGACGGTCGTTGACATGAATACGATAATAAGATTG
AGAGAAGTCCTTG
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Coding sequence (CDS) from alignment at CM002462.1:954862..955874-

>rna4135 ID=rna4135|Name=rna4135|organism=Nannochloropsis gaditana|type=CDS|length=1092bp|location=Sequence derived from alignment at CM002462.1:954862..955874- (Nannochloropsis gaditana)
AGAATTCCGAGCAAGTGCTCCTCATCACCCAAGCGGCCACCCGCGTGGGA
TTCCAAGGAGGGCTTGTAGTCGATTACCCCAACAGTAGCAAAGCCAAAAA
GTACTATTTGTGTCTCTCCTTTGAGCACAGCTACAGGGTGCCGCAAGCAC
TTGGTCGGGAAGAGGGAGGTCGGGCGTTGACGAGTGTGGGTGTCACTGAA
AGGGAGAGGGTGAAGCCGCGAGGGAGGAAGAAGGGGGGAAAGCGGGAGCA
GGTCAAAAGCCGGGAGTGGGTGCTGGCCAAGAAGGAAAAACAGAGGCGAA
AGGGACTGGATGTACGCGAGGACAGTAAATATACGGCACGGAAACGAAAA
GATCGATTGTAAATGGGCCAGGGTCTTCCCTTCCGAGCCGCGTGCTTTGA
CGGGGCTGTCTCCATTTCCGCGTTGCAGTGGCTCTGCTACGAGGACAGCA
AGGCTCAGTCGGCCAATGCCCGCTTGATGCGCTTCTTTGCCTCCCTCTAC
ACAGTCCTACGCCGGGGGGCCAGGGCGGCTTTACAATTCTATCCGGAGAA
TTCCGAGCAAGTGCTCCTCATCACCCAAGCGGCCACCCGCGTGGGATTCC
AAGGAGGGCTTGTAGTCGATTACCCCAACAGTAGCAAAGCCAAAAAGTAC
TATTTGTGTCTCTCCTTTGAGCACAGCTACAGGGTGCCGCAAGCACTTGG
TCGGGAAGAGGGAGGTCGGGCGTTGACGAGTGTGGGTGTCACTGAAAGGG
AGAGGGTGAAGCCGCGAGGGAGGAAGAAGGGGGGAAAGCGGGAGCAGGTC
AAAAGCCGGGAGTGGGTGCTGGCCAAGAAGGAAAAACAGAGGCGAAAGGG
ACTGGATGTACGCGAGGACAGTAAATATACGGCACGGAAACGAAAAGATC
GATTGTAAATGGGCCAGGGTCTTCCCTTCCGAGCCGCGTGCTTTGACGGG
GCTGTCTCCATTTCCGCGTTGCAGTGGCTCTGCTACGAGGACAGCAAGGC
TCAGTCGGCCAATGCCCGCTTGATGCGCTTCTTTGCCTCCCTCTACACAG
TCCTACGCCGGGGGGCCAGGGCGGCTTTACAATTCTATCCGG
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Synonyms
Publications