EWM26567.1, cds4121 (CDS) Nannochloropsis gaditana

Overview
NameEWM26567.1
Unique Namecds4121
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:944602..944719 +
Alignment locationCM002462.1:944811..944885 +
Alignment locationCM002462.1:945039..945265 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26567.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100084g6.1575.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:944602..944719 +
CM002462.1supercontigCM002462.1:944811..944885 +
CM002462.1supercontigCM002462.1:945039..945265 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26567.1 vs. NCBI_GenBank
Match: gi|585108652|gb|EWM26567.1| (hypothetical protein Naga_100084g6 [Nannochloropsis gaditana])

HSP 1 Score: 282.337 bits (721), Expect = 2.954e-96
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query:    1 MGEDVKVPLVVKKEEKDGTEVIHLRNPGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLKGSGVSSPSPVKKAATVKKAGGEGRKRKSRLEDDVVVKTGLMEGGMEGVGSTAFA 139
            MGEDVKVPLVVKKEEKDGTEVIHLRNPGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLKGSGVSSPSPVKKAATVKKAGGEGRKRKSRLEDDVVVKTGLMEGGMEGVGSTAFA
Sbjct:    1 MGEDVKVPLVVKKEEKDGTEVIHLRNPGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLKGSGVSSPSPVKKAATVKKAGGEGRKRKSRLEDDVVVKTGLMEGGMEGVGSTAFA 139          
BLAST of EWM26567.1 vs. NCBI_GenBank
Match: gi|219122320|ref|XP_002181495.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406771|gb|EEC46709.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 86.2705 bits (212), Expect = 2.622e-19
Identity = 47/118 (39.83%), Postives = 71/118 (60.17%), Query Frame = 0
Query:   27 PGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLK---GSGVSSPSPVKKAATVKKAGGEGRKR---KSRLEDDVVVKTGLMEGGMEGVGSTAF 138
            PGQK+PTPTPG  +R+FYETL +Q P+S MAQE+C+ YG+L  +EA  ++K+V  RK +   G G ++ SP +K +       + +KR   + R E D+ V  G      +G+G+   
Sbjct:    7 PGQKFPTPTPGFGDRVFYETLLRQRPDSIMAQEWCVSYGVLPHDEAERLHKKVTDRKRQMRLGGGSAATSPARKTSV------KAKKRVIKEERFEPDLQVSGG------DGIGTAVL 112          
BLAST of EWM26567.1 vs. NCBI_GenBank
Match: gi|673032186|ref|XP_008870054.1| (hypothetical protein H310_06685 [Aphanomyces invadans] >gi|574474054|gb|ETW01056.1| hypothetical protein H310_06685 [Aphanomyces invadans])

HSP 1 Score: 86.2705 bits (212), Expect = 3.050e-19
Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 0
Query:   25 RNPGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLKGSGVSSPSPVKKAATVKKAGGEGRKRKSRLEDDVVVKTGL-MEGGMEGVG 134
            R PGQK+PTP+PG  +R+FYE+L  QNP S MA+++C+ YG+LD ++A ++ K++      G   SS    KKA   KK     RK K+ L DD V  TGL      EGVG
Sbjct:   14 RKPGQKHPTPSPGFADRVFYESLLSQNPKSKMAKKWCLEYGVLDWDDAAALCKEL------GVSFSSKGGAKKAVDPKK-----RKSKNIL-DDTVDDTGLHASSNYEGVG 112          
BLAST of EWM26567.1 vs. NCBI_GenBank
Match: gi|1210513619|dbj|GAX27491.1| (hypothetical protein FisN_23Hh043 [Fistulifera solaris])

HSP 1 Score: 85.1149 bits (209), Expect = 7.471e-19
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0
Query:   27 PGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLK 85
            PGQK+PTPTPG  +R+FYETL QQ P+SFMAQE+C+ YG+L  E A  + +QVQ RK +
Sbjct:   10 PGQKFPTPTPGFGDRVFYETLLQQRPDSFMAQEWCVNYGVLSYERAEELCRQVQERKRR 68          
BLAST of EWM26567.1 vs. NCBI_GenBank
Match: gi|1210514558|dbj|GAX26515.1| (hypothetical protein FisN_23Lh043 [Fistulifera solaris])

HSP 1 Score: 84.7297 bits (208), Expect = 9.905e-19
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0
Query:   27 PGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLK 85
            PGQK+PTPTPG  +R+FYETL QQ P+SFMAQE+C+ YG+L  E A  + +QVQ RK +
Sbjct:   10 PGQKFPTPTPGFGDRVFYETLLQQRPDSFMAQEWCVNYGVLSYERAEELCRQVQERKRR 68          
BLAST of EWM26567.1 vs. NCBI_GenBank
Match: gi|224013602|ref|XP_002296465.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968817|gb|EED87161.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 82.8037 bits (203), Expect = 7.369e-18
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 0
Query:   28 GQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLKGSGVSSPSPVKKAATVKKAGGEGRKRKSRLEDDVVVKTGLMEGGMEGVG 134
            GQK+PTPTPG  +R+FYETL +Q P+S MAQE+C+ YG+L EEEA    K V  RK    G    S      + K AG + +K+  ++ DDV    G+  GG +G+G
Sbjct:   12 GQKFPTPTPGNGDRVFYETLLRQRPDSEMAQEWCVNYGVLSEEEAAKAYKAVVKRK----GSKKASSTSPTPSSKSAGTKKKKKVKKVLDDVAYDAGMDAGGDQGIG 114          
BLAST of EWM26567.1 vs. NCBI_GenBank
Match: gi|698779477|ref|XP_009822782.1| (hypothetical protein H257_01326 [Aphanomyces astaci] >gi|574122443|gb|ETV87919.1| hypothetical protein H257_01326 [Aphanomyces astaci])

HSP 1 Score: 80.8777 bits (198), Expect = 4.500e-17
Identity = 43/111 (38.74%), Postives = 66/111 (59.46%), Query Frame = 0
Query:   25 RNPGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLKGSGVSSPSPVKKAATVKKAGGEGRKRKSRLEDDVVVKTGLM-EGGMEGVG 134
            R PGQK+PTP+PG  +R+FYE+L  QNP S MA+++C+ YG+L+ ++A  + K++      G   SS    KK++  KK      ++ + + DD V  TGL      EG+G
Sbjct:   14 RKPGQKHPTPSPGFADRVFYESLLSQNPKSKMAKKWCLEYGVLEWDDAAVLCKEL------GVSYSSKGAAKKSSEPKK------RKANNILDDTVDDTGLHASSNYEGIG 112          
BLAST of EWM26567.1 vs. NCBI_GenBank
Match: gi|953501959|emb|CEG36890.1| (hypothetical protein PHALS_04143 [Plasmopara halstedii])

HSP 1 Score: 80.1073 bits (196), Expect = 1.150e-16
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 0
Query:   25 RNPGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLKGSGVSSPSPVKKAATVKKAGGEGRKRKSRLEDDVVVKTGLMEGGMEGVGSTAF 138
            R PGQK+PTP+PG  +R+FYE+L QQ P+S MAQ++C+ YG+L   EA  + K +       + V+ P+ V K    +K+      R++  E +      +  G  EG+G +A 
Sbjct:   15 RKPGQKHPTPSPGFADRVFYESLLQQRPDSRMAQKWCLEYGVLKWAEAEMLCKTLGL----SANVTHPTKVSKIKK-QKSSASSAVRRALDESEAAASMEITNGSYEGIGLSAL 123          
BLAST of EWM26567.1 vs. NCBI_GenBank
Match: gi|695437338|ref|XP_009532192.1| (hypothetical protein PHYSODRAFT_317246 [Phytophthora sojae] >gi|348672039|gb|EGZ11859.1| hypothetical protein PHYSODRAFT_317246 [Phytophthora sojae])

HSP 1 Score: 79.337 bits (194), Expect = 1.791e-16
Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = 0
Query:   25 RNPGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLKGSGVSSPSPVKKAATVKKAGGEGRKRKSRLEDDVVVKTGL--MEGGMEGVGSTAF 138
            R PGQK+PTP+PG  +R+FYE+L QQ P+S MAQ++C+ YG+L   EA ++ K++      G  ++   P  K+  +KK       R SR++D+      +     G EGVG  A 
Sbjct:   15 RKPGQKHPTPSPGFADRVFYESLLQQRPDSRMAQKWCLEYGVLKWAEAEALCKKL------GVSINVTRPA-KSPKLKKQQKSAGGRASRVQDESAAAEAMEISGAGFEGVGLGAL 123          
BLAST of EWM26567.1 vs. NCBI_GenBank
Match: gi|669164800|ref|XP_008617962.1| (hypothetical protein SDRG_13643 [Saprolegnia diclina VS20] >gi|530730323|gb|EQC28565.1| hypothetical protein SDRG_13643 [Saprolegnia diclina VS20])

HSP 1 Score: 78.1814 bits (191), Expect = 4.397e-16
Identity = 50/122 (40.98%), Postives = 72/122 (59.02%), Query Frame = 0
Query:   14 EEKDGTEVIHLRNPGQKYPTPTPGVPERIFYETLYQQNPNSFMAQEYCILYGILDEEEAISVNKQVQARKLKGSGVSSPSPVKKAATVKKAGGEGRKRKSRLEDDVVVKTGLMEGG-MEGVG 134
            EE+   E+   R PGQK+PTP+PG  +R+FYE+L +QNP S MA+++CI YG+L+ +EA ++ K +        G++  +P  K      A     K+KS + DD V   GL  G  MEGVG
Sbjct:    3 EEEWSKELEANRKPGQKHPTPSPGFADRVFYESLLRQNPESKMAKKWCIEYGVLEADEAAALCKAM--------GIAFKAP--KELKKTSAKSSSSKKKSNVLDDAVDDIGLHAGSHMEGVG 114          
The following BLAST results are available for this feature:
BLAST of EWM26567.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108652|gb|EWM26567.1|2.954e-96100.00hypothetical protein Naga_100084g6 [Nannochloropsi... [more]
gi|219122320|ref|XP_002181495.1|2.622e-1939.83predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|673032186|ref|XP_008870054.1|3.050e-1945.05hypothetical protein H310_06685 [Aphanomyces invad... [more]
gi|1210513619|dbj|GAX27491.1|7.471e-1961.02hypothetical protein FisN_23Hh043 [Fistulifera sol... [more]
gi|1210514558|dbj|GAX26515.1|9.905e-1961.02hypothetical protein FisN_23Lh043 [Fistulifera sol... [more]
gi|224013602|ref|XP_002296465.1|7.369e-1844.86predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|698779477|ref|XP_009822782.1|4.500e-1738.74hypothetical protein H257_01326 [Aphanomyces astac... [more]
gi|953501959|emb|CEG36890.1|1.150e-1635.96hypothetical protein PHALS_04143 [Plasmopara halst... [more]
gi|695437338|ref|XP_009532192.1|1.791e-1637.93hypothetical protein PHYSODRAFT_317246 [Phytophtho... [more]
gi|669164800|ref|XP_008617962.1|4.397e-1640.98hypothetical protein SDRG_13643 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4131rna4131Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications